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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0570900 |
| Transcript ID | LotjaGi1g1v0570900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase-like protein; TAIR: AT4G34480.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q9M069|E137_ARATH Glucan endo-1,3-beta-glucosidase 7; TrEMBL-Plants: tr|G7J6K5|G7J6K5_MEDTR Glucan endo-1,3-beta-glucosidase-like protein; Found in the gene: LotjaGi1g1v0570900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:110444326..110448013) extracted from Lotus japonicus Gifu genome v1.2.
GTCCAGTTTTGGAGTCTACTGTAGTGTGTATACCGTTACATTTTTCAACGCTGGTTCCACTCTTTTTTCTTCCCTTCCGT TATATATATCAATATTTATATGCTCTTCTCTTCGTCTTTGTCAAACTGTGTGTCACTCACATTCACAGTGTTCCCTTTCG TTTTCTTTCAACTCTCACCTTTCTTTCTTTCTTTCTTAGCTATGTCTTCTCCTTCATTCCTCTTCTTCCTTTCTCTGTTC GCCATCGTTCTCTGCTTCTCTGGTTAGTCACTTCACTACACTCCGTGCCTGTTTGGTTTTCAGTTTGAAAGTGCTTACAC TCAACACATTTGGGGCATTGAAATCTTGAATTCCAATGCCACAAATAAACTTCCAAACCGAAAACCAAACACAATAGTCT TCATCTTTTAACAAAAATACAGTGTTACTTTCTTTTAACTAACTTTCTTTTCTGTTTCTTGCAGAAGCCCAATCCTTCAT CGGCGTCAACTACGGCCAAGTCGCCGACAACCTTCCACCGCCAAAGTCCACCGTCAACCTCCTCCGATCCACCTCCATCG GAAAAATCCGCCTCTACGGCGCCGATCCCGAGATCATCAAGGCCCTCGCCAATTCCGGAATCGGAATCATCATCGGCGCC GCCAACGGCGACATTCCAAATCTCGCCGCCGATCCCAACGCCGCAGTTCAGTGGGTAAACTCCAACGTCTTACCCTACTA CCCCGCCAGCAACATCACTCTCATCACCGTCGGCAACGAGGTACTCACCTCCGGCGACCCCAACCTCGCCTCGCAGCTGG TCCCGGCGATTCGGAATGTGCAGAGCGCGCTCACCTCCGCCTCCCTCGGCGGCAAGATTAAGGTCTCGACGGTGCAGTCC ATGGCGGTGTTGTCTCAGTCGGATCCACCGTCTTCCGGGTCGTTCAACGCGGCGTTCCAAGACAATCTGAAACAGTTGCT GCAGTTTCTGAAGGATAACCATTCTCCTTTCACGATCAACCCGTACCCGTTCTTCGCGTACCAGTCCGACCCGAGACCCG AAACGCTTGCATTCTGTCTCTTTCAGCCAAATAAGGGTCGGGTCGATTCGGGTAACGGAAAACTTTACACGAACATGTTC GATGCTCAGGTAAGAGAATCAATGTCACTGTTTTTCGTTTTCTGTTCTTTTCTTTTCTTTTTGCTTTCTATAAATGAAAA AGGTTGACGTGGGTTGAAAGCATTTATGCAATATTCAATATTTCTCTAATTTACTCCACGTGCCCCCATAGTTATTAGCT GTAGAATTTAGAAAGTCACTAAATTAAGTTCCATTTTAATCGGGTTTATAACCTATAAGATCCAATACAGTTGGTAGATA ATTGAATTGTCTAAATATTTAGTTTAGAGTTTAATTTTTAAGAGGTGGCGGCTGACTGTGAGAATATATTGAGAAATCAA ACAAATTTTTAATAGGTTTTATTTTGTTATGATAATGGATAGTAGATAAATAATATGGATTATTGGAAATTTTGGTCATC AACTTTCCAAATTTTAATCAAATGGATTAAATCCGGTGTCCTTTTCAGGTTTAACACTTTGCAATGTTCATCTCTAAAGT TTCCATGTGTTTAATTGCTTTACAGCTAAACCCACTTGTTTCTTGGGAGCAAATAACTATTACCTTGAATAGTAACCATG TGTAGTTTACTGATTTTGAATCTTGACTCTTGAAGTTATAGTGAGACCCATTTAGGGCATGGTCATTTTGCTCAATTTGC ATTTTCCATATTACTATACTTTAAATGATCATGACTTTTTGTTTTTCACATTGAAAGTCACTTGGTCGGTTAGTGGGCTA TTTAACCATGTATTTCTTGCATGGTTGGTTTTAACCATATATAGTTTGCTATGTCTTAAGTTATAGCAAAGACATGTTTG AATAGGACTCTGAGTTGATCCCACTATCCCCTTTTTTTCCACCATGTAATAATGAACCCCTTGATTACACCTTATCACTT TGATTGGAAACAGGCTGGCCAGTGGCCACTTACCATATGGCTACAAAACAAGTCCTTCCAAAGCTTCAATAATTGTTGCC CATAGATAAAGAAAATGTACTATAGTAGTAACTATGGTAGGTAGGCCCTTAAACTTTTTTTTATCCTTTGGAATGAAAAG GAAGAGAACTTTCCTATGTCAGGGAATAATTACTATTCCCCTAACGGCCTAGTATTGATTTTTTGGCACATGGCCAAACT CCTAGTCTATTATTGCCCAAAATTTCTCAATTCAGAAATATTTGAATATATGGTAAAAAATAACAATGAGACCAAAATCA TGATATATAGTTGTAAAAGCTAAATGAGGTTATTTCTATCCACTATAATTTTTATTTTGTTGTGGCTTTCCATATTGTAT CCAAATATTGGTATTTGGGAGGCACATAGAAATGCTAGGATTATGCTTACTAATTGAATCCAAATGGGAAGCCTTTTATT AATCTCATCTGGTTTAGAGTTAGTTTTTTGCTTTCTGATCTTTTGGATTTGAATGTTGAGCAGGTTGATGCTGTGTATTC TGCATTGAGTTCTCTGGGCTTCCAGGGCATTGAGATTGTGGTTGCTGAGACAGGATGGCCCTCTCGCGGCGACAGCAATG AAGTAGGACCAAGTGTTGACAATGCTAAGGCCTACAATGGCAACCTTATTACTCATCTTAGATCATTGGTTGGGACCCCA TTGATGCCTGGGAAGTCTGTGGACACTTACATTTTCGCAATCTATGATGAGGACTTAAAACCTGGCAAAGGATCTGAACG GGCTTTTGGGCTTTTCAAAACTGATCTTACCATGTCATATGATGTTGGTTTATTCAAGTCTGGCCAGCAGGTGATGAAAT TACCAATCTTTAAGGCTTGGTCTTGAAAAAAGTGCTTAAGATTTTGGAATGATTCTTAGTAACATCTATCTTATTTGTCT TTCTACAGACTCCAACAACACCAGTTACTCCGGCACCTAGTGCTGGAGCTTCATGGTGTGTCGCGAAACAAGGAGTCTCT GATGCTCAGTTGCAGGCCAATCTTGACTATGTCTGTAGCCAAAGCAACATAGACTGTGGGCCAATACAATCAGGAGGTGC TTGTTTTGAACCTGACACAGTAGCATCCCATGCTTCCTTTGCTATGAATCTCTACTACCAAACCTCAGGCAGAAACTCAT GGAACTGTGATTTCTCTCAAACAGGAATGCTGGTGTCACAAAATCCAAGTAAATTATCTAGGCACTCCTCCTTGAAATCT TTGTTTTAATGATGCAAATTGTTGTTTGCTGTTATACTTTTACATGTGTTCTGTTGGTTGTCTAACTGGATTTGCTCCTC TAATTGGTAGGTTACAATGCTTGCATATATTCTGCTGGTGGGAGCAACTGAAAAGCAGAGGCTTCAGCTTGACATAAGTT AATACATTTTGTCGATAGGATTAGTATTTAGAATTAAATTAATGAATAAGGGTTTATTTTTGGCCCAATTTCATTTCATA AAGCTTCAATTGTAAAGGCATATGCTGGTTCTGGTTTGTGCAAAATCTCACTTTTTAGTGTGGCAATCAACAACTTTTGT TTCCTTTATTTCTTTTCTTTTATGATACCGCTTTATGCCTTTATCCCATTTTTTCAATATATTATTGAGAATGATAGTTA CATTACAT
CDS sequence (LotjaGi1g1v0570900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCTTCTCTTCGTCTTTGTCAAACTGTGTGTCACTCACATTCACAGTGTTCCCTTTCGTTTTCTTTCAACTCTCACC TTTCTTTCTTTCTTTCTTAGCTATGTCTTCTCCTTCATTCCTCTTCTTCCTTTCTCTGTTCGCCATCGTTCTCTGCTTCT CTGAAGCCCAATCCTTCATCGGCGTCAACTACGGCCAAGTCGCCGACAACCTTCCACCGCCAAAGTCCACCGTCAACCTC CTCCGATCCACCTCCATCGGAAAAATCCGCCTCTACGGCGCCGATCCCGAGATCATCAAGGCCCTCGCCAATTCCGGAAT CGGAATCATCATCGGCGCCGCCAACGGCGACATTCCAAATCTCGCCGCCGATCCCAACGCCGCAGTTCAGTGGGTAAACT CCAACGTCTTACCCTACTACCCCGCCAGCAACATCACTCTCATCACCGTCGGCAACGAGGTACTCACCTCCGGCGACCCC AACCTCGCCTCGCAGCTGGTCCCGGCGATTCGGAATGTGCAGAGCGCGCTCACCTCCGCCTCCCTCGGCGGCAAGATTAA GGTCTCGACGGTGCAGTCCATGGCGGTGTTGTCTCAGTCGGATCCACCGTCTTCCGGGTCGTTCAACGCGGCGTTCCAAG ACAATCTGAAACAGTTGCTGCAGTTTCTGAAGGATAACCATTCTCCTTTCACGATCAACCCGTACCCGTTCTTCGCGTAC CAGTCCGACCCGAGACCCGAAACGCTTGCATTCTGTCTCTTTCAGCCAAATAAGGGTCGGGTCGATTCGGGTAACGGAAA ACTTTACACGAACATGTTCGATGCTCAGGTTGATGCTGTGTATTCTGCATTGAGTTCTCTGGGCTTCCAGGGCATTGAGA TTGTGGTTGCTGAGACAGGATGGCCCTCTCGCGGCGACAGCAATGAAGTAGGACCAAGTGTTGACAATGCTAAGGCCTAC AATGGCAACCTTATTACTCATCTTAGATCATTGGTTGGGACCCCATTGATGCCTGGGAAGTCTGTGGACACTTACATTTT CGCAATCTATGATGAGGACTTAAAACCTGGCAAAGGATCTGAACGGGCTTTTGGGCTTTTCAAAACTGATCTTACCATGT CATATGATGTTGGTTTATTCAAGTCTGGCCAGCAGACTCCAACAACACCAGTTACTCCGGCACCTAGTGCTGGAGCTTCA TGGTGTGTCGCGAAACAAGGAGTCTCTGATGCTCAGTTGCAGGCCAATCTTGACTATGTCTGTAGCCAAAGCAACATAGA CTGTGGGCCAATACAATCAGGAGGTGCTTGTTTTGAACCTGACACAGTAGCATCCCATGCTTCCTTTGCTATGAATCTCT ACTACCAAACCTCAGGCAGAAACTCATGGAACTGTGATTTCTCTCAAACAGGAATGCTGGTGTCACAAAATCCAAGTTAC AATGCTTGCATATATTCTGCTGGTGGGAGCAACTGA
Protein sequence (LotjaGi1g1v0570900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLFSSSLSNCVSLTFTVFPFVFFQLSPFFLSFLAMSSPSFLFFLSLFAIVLCFSEAQSFIGVNYGQVADNLPPPKSTVNL LRSTSIGKIRLYGADPEIIKALANSGIGIIIGAANGDIPNLAADPNAAVQWVNSNVLPYYPASNITLITVGNEVLTSGDP NLASQLVPAIRNVQSALTSASLGGKIKVSTVQSMAVLSQSDPPSSGSFNAAFQDNLKQLLQFLKDNHSPFTINPYPFFAY QSDPRPETLAFCLFQPNKGRVDSGNGKLYTNMFDAQVDAVYSALSSLGFQGIEIVVAETGWPSRGDSNEVGPSVDNAKAY NGNLITHLRSLVGTPLMPGKSVDTYIFAIYDEDLKPGKGSERAFGLFKTDLTMSYDVGLFKSGQQTPTTPVTPAPSAGAS WCVAKQGVSDAQLQANLDYVCSQSNIDCGPIQSGGACFEPDTVASHASFAMNLYYQTSGRNSWNCDFSQTGMLVSQNPSY NACIYSAGGSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| TMHMM | 10 | 32 | 23 | - | – | |
| Phobius | 12 | 33 | 22 | - | – | |
| Phobius | 34 | 39 | 6 | - | – | |
| PANTHER | 39 | 482 | 444 | 1.3E-229 | – | |
| PANTHER | 39 | 482 | 444 | 1.3E-229 | – | |
| TMHMM | 39 | 61 | 23 | - | – | |
| Phobius | 40 | 60 | 21 | - | – | |
| Gene3D | 58 | 385 | 328 | 9.6E-125 | – | |
| Pfam | 60 | 377 | 318 | 4.2E-85 | ||
| SUPERFAMILY | 60 | 377 | 318 | 5.27E-93 | ||
| Phobius | 61 | 491 | 431 | - | – | |
| ProSitePatterns | 292 | 305 | 14 | - | ||
| SMART | 400 | 485 | 86 | 1.1E-47 | ||
| Pfam | 401 | 472 | 72 | 1.5E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0570900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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