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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0575200 |
| Transcript ID | LotjaGi1g1v0575200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Copper transporter, putative; TAIR: AT5G59030.1 copper transporter 1; Swiss-Prot: sp|Q39065|COPT1_ARATH Copper transporter 1; TrEMBL-Plants: tr|A0A151R1R4|A0A151R1R4_CAJCA Copper transporter 1; Found in the gene: LotjaGi1g1v0575200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:111004484..111004939) extracted from Lotus japonicus Gifu genome v1.2.
CATTATCAATTTATACTACTCCATCACCTCAATATGTCGTACAACTCCACGGGGGCGACACGGCTGGGGCGACGGAGAAT CCCCATACACACGACCCTCTACTGGGGCTACAAGGTGAACATACTGTTCCATTGCTGGCCCGGAAATAGCGCCGCCATGT ACGCGGTGGCGCTAATGCTCGTGTTCGCCATGGCGGTATTGGTGGAGTGGCTTTCCTTCACCAACATTGTGAAGCTCAAG CCCGGGGGTTCAAACCACGTCGTTGAGGCGCTCCTTAAGACGGGGCTCTACGGCGTGCGTTCCGGGCTTTCTTACTTGGT AATGCTGGCCGTCATGTCGTTTAATGGCGGCGTTTTCCTCGCCGCAATTGGCGGCCACGTCATTGGTTTCTTGATTTTCG GTACGCAGGCCTTCCGGAAGAAGTCATTAGGCGGATTGGATTCTTCAAAACTGTAG
CDS sequence (LotjaGi1g1v0575200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTACAACTCCACGGGGGCGACACGGCTGGGGCGACGGAGAATCCCCATACACACGACCCTCTACTGGGGCTACAA GGTGAACATACTGTTCCATTGCTGGCCCGGAAATAGCGCCGCCATGTACGCGGTGGCGCTAATGCTCGTGTTCGCCATGG CGGTATTGGTGGAGTGGCTTTCCTTCACCAACATTGTGAAGCTCAAGCCCGGGGGTTCAAACCACGTCGTTGAGGCGCTC CTTAAGACGGGGCTCTACGGCGTGCGTTCCGGGCTTTCTTACTTGGTAATGCTGGCCGTCATGTCGTTTAATGGCGGCGT TTTCCTCGCCGCAATTGGCGGCCACGTCATTGGTTTCTTGATTTTCGGTACGCAGGCCTTCCGGAAGAAGTCATTAGGCG GATTGGATTCTTCAAAACTGTAG
Protein sequence (LotjaGi1g1v0575200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSYNSTGATRLGRRRIPIHTTLYWGYKVNILFHCWPGNSAAMYAVALMLVFAMAVLVEWLSFTNIVKLKPGGSNHVVEAL LKTGLYGVRSGLSYLVMLAVMSFNGGVFLAAIGGHVIGFLIFGTQAFRKKSLGGLDSSKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 39 | 39 | - | – | |
| PANTHER | 4 | 130 | 127 | 7.0E-54 | ||
| PANTHER | 4 | 130 | 127 | 7.0E-54 | – | |
| TMHMM | 40 | 62 | 23 | - | – | |
| Phobius | 40 | 62 | 23 | - | – | |
| Phobius | 63 | 93 | 31 | - | – | |
| Pfam | 78 | 122 | 45 | 7.7E-11 | ||
| Phobius | 94 | 122 | 29 | - | – | |
| TMHMM | 100 | 122 | 23 | - | – | |
| Phobius | 123 | 140 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Copper ion transmembrane transporter activity | Enables the transfer of copper (Cu) ions from one side of a membrane to the other. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Copper ion transmembrane transport | The directed movement of copper cation across a membrane. |
Expression pattern of LotjaGi1g1v0575200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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