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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0577900 |
| Transcript ID | LotjaGi1g1v0577900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dynein light chain family protein; TAIR: AT1G52245.1 dynein light chain LC6, flagellar outer arm-like protein; Swiss-Prot: sp|Q6BZF8|DYL1_DEBHA Dynein light chain 1, cytoplasmic; TrEMBL-Plants: tr|K7L1L1|K7L1L1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0577900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:111759235..111761822) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTTTGTAACAACTATTTGGATTGTAACATCTCTGAATGAGTACAAAATTTCATTTTTTCTGATGAAAGGAAAGTGAA ATTACAAAAATGGGAAGATTTTCTCTCTCTCAAGACCTCAACCACTGAAAATTCTGCTGCACTCACACTATATTATCAAG TAACCACAAGCCTTTCCTGTGTTTGTTCTAAGTGTTCTGCTCAAGATGTTGGAAGGAAAAGGTGTGGTGCGAGAAACAGA CATGCCAGAGGAGATGCAGAACCATGTTATGGAGTTTGCTCACCAAGCTCTCGATGCACATGAAGTTTCTGATTGTCAGT CTATTTCTCATTTCATCAAACAGGTCTATCCTAAAATATCCCACCTATTTAACTTTTCTCTTACAAAATCATGTTTGTTT GGTGATTAGTATGTTCTATATATAAAGATTTCGCATTTGTTAAAAGTGTTTGTTTGAAATCGTAGGTTCAAAGTTCAATT CTTAGATTTGTGGAGACATTTGACCTTCACCACACCCCGAGTCGTAATTGCGAACGCAATTTAGTAAAAATATAAAAGAT TCCTTATTAGGAAATATGCTTAGTTTCCATCTATTTTTACTCACAAAGATGGGTGTTGTATGCCTTAAAATTATATAGGA GGAATTCTTGCGTCTTGAAATTTCTTCTGGTAAGCACTTTGTAAATGTAATGTTCTTGCTGAGGCTTATTGCATGAGATT GCCTTAAAATTCAGGAAATTTCTATTCTCACATCAACTTCAGACAACTTAGACTTATACAATGTAAAATTAGTACATATT TAAAGGAAAAAAAGAGAGTTTGACATAGGAAAATCATATGTAATTATGTGAATGTATAAACTAATTATAAGAATAGATTC TCTCTAAAATGTATAAGACTCTTCTCCATAAACTTTATCCTTAAAAGGTTTTTCTCAGATGCTTGCCAGAAGTGGATGGG AGTGCAAGGCAAGAAAAAAGAATTTTTTTTTCCATATCTACTAAAGAATGTAAATGTATTAATTAAAAGTAAGTGTTAGG AACAATATTTTTGAAAACTTTTCATTAAATAAGATGTCTGTATCAGTTATGAAGGTTAAATATGGCTTAAATAAATCACC TATAGCATATATCCTAGGTCGCTAAACGACAAAACGTTAATTGTCTGGTGATACAAAATGCAAGATGCTAGTGCTACTAT TGTTGTATAAATATTATGAAACAATTAATCTCACTAGATTTTATACTATTTAGAATTCAAATAATTTGGATCTGTGAAAC CTTTAGGAGAAGAATACTCACATGGTTCACACATATTAAAATTAAAGAGAATAGAATCATCTGTTCATCAGAAAGCTAGA TTGCATTTCATTGAAGTTACAGTTGAAGCAATAACAAAGTGACTGCAGGGACATGCCTTATAAAACCTAATAAAATTTGC CCCAAATCATTCCTTGTTGTAATAAATAACTCTATAACAACTACAACTGCCAAACCTCGTGGACGTTTGAATACCCGGTA GATTTCACGTTGAAAAGGAGAATTGATTCTGGGAGAAGCTACTTCTAGTAGCTTTTGTAGTAGCAGAGGTGATTTTGGAA GAATAATTTGAACATGAATCCAAACATGCTGCTGATCTCATTGAGTGAAGTTAAACCACATGAATCAAATATGCTAAATT ACAAATAAACCACAGATCAAGGTCTTTTGGACTTGATTGTAAAACTTTCTTTAGTCTTCCTATACTTTGGATTACTTTTT ATCCACTGTCCTCATTGGAATGTATCTTTTATTTGATCCATTAAATAATCACCAAGTGTTCAAATAGTAGTCACCTTACT CTATCAGTAAATAGTAAAAACTGCAACAGTTATGCCTTTTGTTGAGTTTGTAAGTGCTTTGCATCATATTGGATATATTG AATCTTTGGTGTAGAAAACAATCTCAGTTAGTTAACTTGTTAGACAGAAACTTGATGAAGCATATGGACCAGCATGGAAT TCCGTGGTTGGCAAAGACTTTGGATCTTGCATTACATATTTATCTGGAAGTTTCATATTCTTTCATGTTGAGATGATGGA ATTTCTGATATTCAAAGATGGGAAGGACTTCGGAGAAAGAAGGGTAGAAGCTATTGGAGTGCAGCAGAAAGCTACAAACA GAGATTCATAAATTCCAAATTTCTCAGATCATGTTTAGTACCTGAAATTGACCTGTGATGAATATTTAGTACATCAAGAA AAATCAGTTATAGAAGGAACAAACATAAACAACAATGGTGCTTCCAGTGATTTCTGGTTATTTATAAGGAATGAAATATT TGTTCACTCCACCGTGCAGTTTAAGAAGTGAAACTCTTGTTCAATTTCTTTTGTCTTGCGTTCTGTAATAACATTCTATA TTGGCTGTTTTACTTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGTACACTGTCACTGTAACAGTTGAAATAGTATTTTAGAGAGGATCAAATCCCCCT TGTGTCCTATGTATGCCTGAATAGCCTT
CDS sequence (LotjaGi1g1v0577900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGAAGGAAAAGGTGTGGTGCGAGAAACAGACATGCCAGAGGAGATGCAGAACCATGTTATGGAGTTTGCTCACCA AGCTCTCGATGCACATGAAGTTTCTGATTGTCAGTCTATTTCTCATTTCATCAAACAGAAACTTGATGAAGCATATGGAC CAGCATGGAATTCCGTGGTTGGCAAAGACTTTGGATCTTGCATTACATATTTATCTGGAAGTTTCATATTCTTTCATGTT GAGATGATGGAATTTCTGATATTCAAAGATGGGAAGGACTTCGGAGAAAGAAGGGTAGAAGCTATTGGAGTGCAGCAGAA AGCTACAAACAGAGATTCATAA
Protein sequence (LotjaGi1g1v0577900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLEGKGVVRETDMPEEMQNHVMEFAHQALDAHEVSDCQSISHFIKQKLDEAYGPAWNSVVGKDFGSCITYLSGSFIFFHV EMMEFLIFKDGKDFGERRVEAIGVQQKATNRDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 111 | 111 | 1.3E-55 | – | |
| SMART | 1 | 90 | 90 | 1.5E-34 | ||
| PANTHER | 1 | 111 | 111 | 1.3E-55 | ||
| Gene3D | 1 | 91 | 91 | 5.4E-27 | ||
| SUPERFAMILY | 2 | 90 | 89 | 3.79E-25 | ||
| Pfam | 7 | 89 | 83 | 3.2E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Microtubule-based process | Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins. | ||
| Cellular component | Dynein complex | Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity. |
Expression pattern of LotjaGi1g1v0577900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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