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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0578300 |
| Transcript ID | LotjaGi1g1v0578300.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial glycoprotein family protein; TAIR: AT5G02050.1 Mitochondrial glycoprotein family protein; Swiss-Prot: sp|Q8W487|YB95_ARATH Uncharacterized protein At2g39795, mitochondrial; TrEMBL-Plants: tr|A0A0B2P8Z7|A0A0B2P8Z7_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0578300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:111798617..111803172) extracted from Lotus japonicus Gifu genome v1.2.
GCAATTAATTCTATTATATATATATTGGAAAGAGCGCAGAAGTGAGAATACATTCAGAGTCCCCAAAACCCTAACCTTAA ACCCTTTGTTCCGAACACCAAAATGGCCATGAACACAGTGCTTCGTCGAGCCTCCGCCGCCGCCGCCGCTGCATTGCCCC TAGCGGCACGTCGCGCGGTGGCCTCATCCTATTCCAGAGCCTTCCACAGCGCACTCTCTGTTCGGCTCCTTCTCCACCAA GAGAGAACTCCTGCTGTGCCCTCTTTCCGCTTCGCCAACGCCTTCGCAACGAAGACTAGTGCTGATGATAGCATCGTCCA GGTCCTCCAAACTGAGATCGATTGCGCTGTTGAAGACAACGACGCCAACCAGGAAGTAAATTTTCTTCACTTGTTTTTGT TTTCTTTTACACTCTCAAATTCTACTCAGGGTTAGATTGAAGGTTGTGTGTTATTTACCCTTTTGTGCAATTTTTATTTG TGTAGCATAATGGAATCGTTTTTGGATAATGGAATTGGTTGTTGTTGTTGGTTGTTTTATGCTTATCATTAACAATAATT AAGAGTACAGCAATGCTATATAGGCCGATAGTTTTTCAAGACGATTGGTACGAACGTTCATAATCATCAGAGTTGTAAAT TTGAAAGGAATCGCAATGTTAATTGATTATGATACATGGATGGTGCTGATATTTACATGTAGGCTTTGATACATTTCGTC TGATGCTAGTTTGGCCCATCAAGCATTTTCCTTAAGATCATGATTGATTTCATAAGTCATAAACTTCTGCTGTTGTGCAT TTGTGCTTTCAAGTGTTTGATCTTGTAATGGTTTAGGTGCATGCTTGAAACATGGTAGGTTTTTATATTTGGGAAAGAAT CAAAGAAACTACGGTAGATTTTGTCACCTATTTTTGTAGTTATGATCTTATTTTTCTCTATATGTCCAGCTCTGGAGAGT ACCATTCTCTGTCTTTGATCATTTACTCATCTTTGTATGGGATTACTGAATTTCTGCAGTTTTTGCCAGTTATCAACCAG TGTTGTCAAATCGCGATCGCGGACCATCGCGGTGAGCCAAAAATATGCTATTTCAGCCACTATTTAGAGGCGAATAGCGC GCTATAGTGGGCAATAGCGGCGTCGCGATTATCCAAAAATCCGCTATGCCGCTCTAGCCGCTATTTGATAACACTGTTAT CAACACATGATATGACTTGGCTGGATTGAGTAATCTTGTCATCTATTAGAAGTTTATTGCTTCATGTGAAAAGCCGAAAA ATTAGGTTGAAGTTCAGTTGGTTTTCTTTTTCACTTTTTTTTTTAAAATCTTTTGCGCAAACCTTTTAGATTAACTGTTC ACCCTTCCTCATTTTTATTTGATATCATTGACCACTCATCTCTGTGCAATGTAAGTTTTTGTACATTATTTTATCCCCTT TGAGCTTAAACTTTACATTGTATGATTAGTCTGGTACCAATGTTTTGTTTTAAGACATGATTTCAAGTTAGTTTGACAAA TACAACATTGGGGAGTTGCTATATGTTATGTTATAAGTATATTTCAAATTTTCAATAGCTCTTTGAATGTAGCTTTCCTT CAGTTGTTATTTGAATCCCTTGTGAATTTGCAAAAGCATCCTAGTATTGTTTAATTATGTACCTAATATTGTTAAATTAT GCAAGTTATCTTTGGCATAAAAAAATGTACAGCAGTAACAGCTTTAGAGTCAACCTTCAAGGTTTTATTTGCCAGAAATC TTAAGAGACATTTATGTATTTTCCTGCCACATAAACTGTGTAGTTTAATGAATGCAATATATGGTGAATTAAACAGTTAC CCTTATAAAGTAGTGTCAGATGCAGCCATAATCAGGGCACCCCTATTGTGATTTTATCGTTGGTTTTATCATTGGTAGAT TTGCTTTTGATATTTACAGTCATGTTGAGTTCATTTTCTCTTTTGCGTAAATTTGCCAGGTTGAAGTCCCAGATGATTTT CCTTTTGAGATTGAGGACAATCTTGGAGAAAGAACGATACAACTAAAGAGACAGTACCAAGATGAAACTATCAAAGTTCA AGTTGACATCCCTAATGTTGCACCTGAAGAAAATGAGGACGCGGATGAAGGCGAGAATGCTGAGAAGAATGAGAGTGAAT CTAGCATTCCTTTAGTTGTGAGTGTTTTCAAAGGAAATGGAGTGTGTCTGGAGTTTGGTGTGACTGCTTTCCCTGATGAG ATTTCAATCGATAGCTTGTCAATAAAGCAGCCTGAAGAATCTGAAGACGACCAGCTGTCATATGAGGGACCTGAGTTCAC GTAAGAATTTAGTGCATATGGTTTTTTTTAGTTTTATGATATAATAGACACATACTGAGTAGCATTTCTGTTTTGTTCGT TTTTACAGTGATTTGGATGAAAATCTGCAAAAGGCTTTTCTCAAGTATCTTGAAATCCGGGGGATCAAACCCAGTACAAC CAACTTTTTGCAAGAATACATGTTTAGCAAAGACCACAAGGAATACTTAGTGTGGTTGAAGAACTTGAAGAACTTCATTG AGAAATGATTTTACAAAGGAACTGCTTCTTACTATTGAAATCATGAAATGTTGAAAAGGCCCTTGTTGTATATTTCTGGA TTCAACTAATAATTTTAGAACACTTGGTGAACCATTGTTTAAGCTTCCTATGTAGTTTAATATCACCCTCCAATTTGTGG CCTGAGTTGCTTCCTATTTATTTTTTGCCTGTCATAGTTGAGATAGAAATTTCTTGTTCACTGCTTATTATAGTTTGGCT AGATAAAGTTGGCTATAATCCATCATTTCCTAGATAAAAGACTATTATAAATAAACCCGTATCTAGATAAATAAATGTAT ATAAAAGTTGAGCAGTGAGAAAATTTAATATATTTGTATCTAGATAAATAAATGTATTATAATAGTATTGTTATAAATTT AAATGATTTATTTATCTTAACCACAAATACACACTGGTACTCACACAGATACTTCTAAACCCGGTAAAAATTCTCATAAT AAACATCTATGTGGATATAGAGCAAATATAAGTGCATGTAAGGACAACTTTCCTTCCGTTATTTTGTGATGCTTTGTTTT ATTTTTCAATGCATTTATTGGTTACTCTGAAGTTACAGTTAAATAGTTAATAGAGTCATGCAATGATCCATGTTTTTCTC CTAAACCTTTGATATGTAACACATGCCGTACACATAATATTTGCTTCAACGAAAAACAAAATTAAACTGCCTCAGTAATG GTGTGCATTGCTGCCTTTGGATTTAAAATTTCAAAGTTGAATCGTTTTTATTCTTCTTTTCTTTCTTTACGAGATTATTG TTGTTTTTCAATCTCTTGCTTTGGTTGATATACAGGAGAACATGGACAAAGAAATTCTGCATTTTGATCTGAATACTGGT GTAAAGATACCATCAGTTGGTCTTGGAACATGGAAGGCTCCTCCAGGTGTTGTGGGTGATGCTGTTGTTGTTGCAGTCAA GGTGTTTGTGTTTTTGTCTCTATATTTCTTTGTTCCTCCTGTGTTTAATGTGCTAAATTTTTTCTTTGATTAACATTATC CAAATTCATAGTGCAGGCTGGCTACAGGCATATAGATTGTGCGCGGGTATATGATAATGAAAAAGAGGTCATTGTTTTCT CCTAATGGTTAATTTAATATTCTGGGTTGTTCAAGAAAAAATTGTTTTTTTTTTTGTTTTGCCTTGGTTTATACTAGGTA GTTTGGATTTGATGCAGGTAGGGGAGGCGCTGAAAACACTGTTTTCTTCTGGGGTAGTGCAGCGTAGTGAAATGTTCATC ACATCAAAGCTATGGTATGTGCTGGGACTAATTCTGATCCTCCATTCCAGTTGACCTCGCTTTATCTGAATTAAGCTTTT AATGTGCTTTGAGGGATTAGACTTGAGATCACATAGTATGGATTTCATTCATTTTTTATTTTAGTGAAAGTATTGAAATC CAAGAAAGAATGAAAAATAAACCTAAAATTCCATTTTGGTATTGTACATTGCTGTCAGCAGTAATGAACTCCCTCAGGTT TCTTGAAATTTTTATGCATACAGGATCAGTGATTGTGCACCTGAAGATGTCTCAAAGGCACTGGCAAGGACGCTAGAGGA CTTGCAGCTTGACTACATTGATTTATATCTTGTATGTTTCTTGATTTCAATGTTGCCTGTAAAATTGATGCAGAAACTGG AGATGCTGTTATGAATTTTGATAGTAAATTTTGTCACAGATGCATTGGCCTTTTAGGACAAAGCCAGGATCCCGAGGTTG GGGCCCTGAGGTCATGGCTCCCTTATGTCTTCCAGAGACATGGAATGCAATGGAAGGTTTATTTGCCTCCGGTCAGGCAC GTGCGATTGGCGTAAGCAACTTTTCAACTAAGAAGCTGCAAGACCTGCTCAGATATGCTAAGATTCCACCAGCAGTTAAC CAAGTTGAATGTCACCCAGTTTGGCAGCAGCCTGCTCTTCATAATCTGTGCAAGTCTACTGGTGTTCATCTCACAG
CDS sequence (LotjaGi1g1v0578300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCATGAACACAGTGCTTCGTCGAGCCTCCGCCGCCGCCGCCGCTGCATTGCCCCTAGCGGCACGTCGCGCGGTGGC CTCATCCTATTCCAGAGCCTTCCACAGCGCACTCTCTGTTCGGCTCCTTCTCCACCAAGAGAGAACTCCTGCTGTGCCCT CTTTCCGCTTCGCCAACGCCTTCGCAACGAAGACTAGTGCTGATGATAGCATCGTCCAGGTCCTCCAAACTGAGATCGAT TGCGCTGTTGAAGACAACGACGCCAACCAGGAAGTTGAAGTCCCAGATGATTTTCCTTTTGAGATTGAGGACAATCTTGG AGAAAGAACGATACAACTAAAGAGACAGTACCAAGATGAAACTATCAAAGTTCAAGTTGACATCCCTAATGTTGCACCTG AAGAAAATGAGGACGCGGATGAAGGCGAGAATGCTGAGAAGAATGAGAGTGAATCTAGCATTCCTTTAGTTGTGAGTGTT TTCAAAGGAAATGGAGTGTGTCTGGAGTTTGGTGTGACTGCTTTCCCTGATGAGATTTCAATCGATAGCTTGTCAATAAA GCAGCCTGAAGAATCTGAAGACGACCAGCTGTCATATGAGGGACCTGAGTTCACTGATTTGGATGAAAATCTGCAAAAGG CTTTTCTCAAGTATCTTGAAATCCGGGGGATCAAACCCAGTACAACCAACTTTTTGCAAGAATACATGTTTAGCAAAGAC CACAAGGAATACTTAGTGTGGTTGAAGAACTTGAAGAACTTCATTGAGAAATGA
Protein sequence (LotjaGi1g1v0578300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMNTVLRRASAAAAAALPLAARRAVASSYSRAFHSALSVRLLLHQERTPAVPSFRFANAFATKTSADDSIVQVLQTEID CAVEDNDANQEVEVPDDFPFEIEDNLGERTIQLKRQYQDETIKVQVDIPNVAPEENEDADEGENAEKNESESSIPLVVSV FKGNGVCLEFGVTAFPDEISIDSLSIKQPEESEDDQLSYEGPEFTDLDENLQKAFLKYLEIRGIKPSTTNFLQEYMFSKD HKEYLVWLKNLKNFIEK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 9 | 9 | - | – | |
| PANTHER | 1 | 257 | 257 | 1.4E-131 | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 27 | 27 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| PANTHER | 1 | 257 | 257 | 1.4E-131 | ||
| Phobius | 10 | 21 | 12 | - | – | |
| Phobius | 22 | 27 | 6 | - | – | |
| Phobius | 28 | 257 | 230 | - | – | |
| SUPERFAMILY | 64 | 256 | 193 | 1.31E-47 | ||
| Gene3D | 65 | 256 | 192 | 2.0E-45 | ||
| Pfam | 75 | 255 | 181 | 4.9E-45 | ||
| MobiDBLite | 130 | 151 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Mitochondrial matrix | The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation. |
Expression pattern of LotjaGi1g1v0578300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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