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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0579600 |
| Transcript ID | LotjaGi1g1v0579600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein; TAIR: AT5G02130.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q8RHI7|RPOC_FUSNN DNA-directed RNA polymerase subunit beta'; TrEMBL-Plants: tr|A0A1J7HM29|A0A1J7HM29_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0579600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:111905106..111911183) extracted from Lotus japonicus Gifu genome v1.2.
TGCAAATTCAAGCTATTTGTCAGCAATAAAAGAAGCATTGGGAATACGCAAGATTCTTCACAATTCGCAAAATAACAAAG AACCCACCCCCATACACATAACTTATTCAGAAGAAGGAAAAAAAACCCTCGTTCTCATTCTCTCACTCTCAGACTCTCTT TCTCTCGGACCCAGAGGCGCTGCACCGCCGTTGATTGGGGTACCGCAGTCGACCTTCGTTCACTCGTCCTGCATACTTGG TGAGTAAGGACTAAACTCACTCTTTTGGCAAAATTGCATTCCTTTCTCATAATTTTATATATGAATTGAAAATTTACCAC AACTGTACAAACGAAAAACTGTATCATGTTGATTTTTGTTATAAAATGCATTCATGCTACTGTTATGCACAAACTAGTAT TAGGTACAGTGCAGATAACATAATGGGCATAATTTTGATCTTTGGTGAGTACTTGCCTAAAAATGAATGATTCTTGCTGC TGTCTACTGCTTATGACATACGTGCATAAGCTTGAAATGTATGGCATTTTTCAAGTTCTTAGGAATGTGTATCTTAATAT TCGATTATGGTTTTCAAATTACACACTTAGGCTTAACCTTGCCCAATTGCTCAGGCTCTACAAAAATCCTGGCTCCGCCA CTACCCTGAAGCAACTACTATGTTTCGCGTAGCAGCAAAGTTGTCATCAAGAGGTTCTTGTTCTTCCACTGCTATTGCCG CTTTCGCAGTAAAACCATCTCCAATTTCCTGCACCAGACCTTCTCCCCTTGCAGCTTCATCGTTCAGGTCATTTAGTAAT GGCTTGGAGTTGGACAAAAACATGGCAGTCCCTGATGCTGTTCGTATGATCAACTACGCAATGAAACAAGCTAGGACTGA CAAATCAGGTGATGGGTCAGAAACTGTGTTTCTCGATTACCCGTTTGTGTTTTTTTGCCAAAGTTGACATCTTTTTGGGT TTTTTTGTTGTGGTTTTCTGTGAATAGTTGGGTCGTACGGTCTAGGTATGCTGGTGTTGAAGCATTGCGTTACAACTGAG TTAACTGAGGGCGAAGACCCACAACATGAGAATTCGAAAGGAATTGCTTTGCTTGCTTGGTCCACTTTGTTGTCTGAAAG GTTCTTTCTTCATGGTCATTTAGTTTCATTAGTGTTCTAATACTCATATTGGGGCTTAATTTTGTGGATGATAGTTTAAA CTCATAGGGACTATTTTTCCCTTTACTTTTCTTAGAGGAGAGTATGGTGATGCAATAGAGAAGCTCCAGAGTGTTCAAGA ATTGACCAATTCTTTGTTGGGGGTTAGAGGTAAATTATTGTTACCCTTTTTATTGATTACAACATTTGTTTTGGTTTTAT TTATTCTCTTTCAATATGATTTTTCATCAATGATTCTGAGTTCTATCTTGGTTTCTTGTTATAGTTGCTGCCTTTGAAGC CGAGGCTGGGCTTCATCTCGAGTTGGGGCAGGTTGGTATCTGCAAGTCATTTGTAAAACATTTGGCTGTTTCTTTTCCCA GAACCATTCATGTTTACTCAGATTTTCATATATAGGATGATATGGCATCAGCAGTGGGGGACAAATGCATAGAGCTCCTA GAGAAACAGAATGCTGAAGACTCTGAGGCTCTAAAGGTTCGTGCTAAAGCACTGAAAGGGCTTATTGAACTTGTCAAGGG CAATATTGAGTCAGGTAGTGCTGATAAGATGTCTATTTGGTTGTTAAGATTGGTGATGTGTGCTTATAAGTTATTACGTA CCTGGTGCAGCTGAAGCCTTCTTTGACAAATCTCTGCTCAGCACCCTATGTGATGGTATCTTTCTATTCATCTGCTACTG TCTAGCTAGAAGACGTTGTTCGACACCAAATTGATTTATGGCTTTGTAGGCTCTGCTGCTCTATCATATGGGGAATTCCT TCAAACAAAGCACAATTATTCAATGGCAAAAGAGGTTTACCAGAACATCATACAAGGAGCCACTACAATAAAAAATAGTG GCAATCCATACTTAGGAGCTGGTAACATGAACTTGGAGGGTTTAATGATGGGGGCCATGTGTGCTTTAGGACAGCTTGAG TCACATTTGGGGTATGGTTTTCCTTAGCCACACCTTACTCTTCCTTTTTATGTTGCCTTAGGTAGTATATCACTAATAAC TGTTGTTTTAGTAACTTTGGTAACGCAGAACAGCATTTGACAAAGGCTTTAAATCAGGCTGAGGAAACCTATGGTATCTT GTCTATTCTTTCGATCTGTTGCAAAATCTGAATTTAGAAATTCATATTGCAATATTGCATTTATCTCTGAGCCTGGTAAT GACATTTTGTGTTTCTTGGTAATTTCTTATTACTCTGTATTTGTTGAAGGTGATCGTCATCCCAAGGTGGGTGTTGTCTT AACAAGTATAGCTCTCATGTATAGGCGTAAAGCAATGCAGGAGCATTCAAGTTCAATTTTGGTGCAAGAGGTTAGTAGTT GGGACGCTTGTGAAGCCACCTTTTTTAATCTTTTCCTTTTTCCTAAAAGTAGCAAAGAAGGATGATTGCTATGTCATAAG TAAGAGATGCATCTAGATGTCTACAATTTGGTTTAGTTCCTGTCCTAAACCTCTGATGCTATAAAAATGTTCTCTGCTCC AGCTTTACAAGATCAATTTTTAACTTGCCTATGCCGAGATGTGTGCCTAACAAACTGATTGACCTTGCTCCGTCTAATGT GACATCCAAGTAACAATGTTTTCAGTAAAAATATTGAAATCTTTTGAAAATGAGTTTCGAGGCTACTAAGTATTTATGTC AATTTTTAACTTCCTTGACTAGTGTGATCTCCTGACTGATAACAAATCTTTTGCATGTATTATATTGTTTTTGCATTGCT ACACTTATGCCTAGTAGTTCACCAGCAGTTTTTTTGCAATTAAAACTGTAATTAATATAGTAAAATCACTGACAGGGTCT CTATAGAAGAGTGACAGATCTTCTGAAGGTTCCACCAGGTGAAACTGATTCGGAAGGTATTGTATCATTTGATTCCCAAT GTCCCATGTATTGTCTACAAGAGTTTTACACGTAATGAATCATGGTTATCAATCACGGAGATAGCAATGCGTTGCAGTTG GAGGCTGCTACACATCCCAGTTTACATAGTGTTTTTATAATGCTCCATAGTTTCACACAACTCAAATCATGTCCGTTCAT TGCCGATCATGCCAATATTGACTCCATGGCTGATGGAGGTTAAAGCCTCAGTTTTCTCCCATTTTCACTTTCCAACCCTA TTTTTTATTTATTTATATTTTCATCATTCTCTTACATTTTTGGCATAGAAAATTTGGAAGCCATTTTTTCATTTCCAACC ATAATTGGCTCTTATGCAAGCCTCTGTTTGTCTTGTCCGCCCTCATGAGTTCAAGCCTACTGATTGCTGATGTAATTTCC AGCTATTACCATCACTCCTAATGTTCACCAGCATACCCTATTACTTAACCACACTCTCGTTTTCCAGTTAACTTCTTACT CTATTCACAGCTCTGTTGCAAGTTGCGATTCATGTTTTTTCTTGTAACCTCACTTCGGTCATCTCACTATAGCATTATCG GCCTGGCAGCTATCTTGGATTGATAACTATGCAGTGAATGCTTATTGAAGCATAACTTTCTTTGTGTAGGTGCGGTACCA TTGGTAGATAGAAGTGACATAGCAGCTCTTGCAAGAGGTATGATGGATTCTTTGATCCTCTATATTCTATGATTGACAAC ATGATCAAGGAGCGTTTATTTTAATATATAGAAATTGACTGTTATCAAGGAGTGGTAGTTATGTGTGTCAAGATGAATGT ACAAACAACCTGATGATTTCTTAAATCTAGAATGTAGAATCTTGAGTGTTAGAGATAGATGCATTTCTAACATTAAGCAT GCGGTGTCATATCTGTTTAATGTTAAATGGAGTGCCTACAATAGGCACTTGCGTAATGGGAAACTAAAGCAGTTCAGATC TTGGTGTTGTATGATGAATGAGTGACTTGAATTAATCCCTCCGTAGTTGGTTGATATCAAGCACATTCATGACGGGGATT ATAGTAAAGTTGTGTTGTTCAATTTAAAGGCTCACTCTGTTGACTGGTTTCATAATATTATAGGTGCATATTCTGAAGTA CTTAGCATCCAAGAAAATAGAAAGGATGAAGGAGAGAAGATGAAGAACTTTGCTGAGGCTATATGGAGAAACCACAGGAT GTCTCTAGATGATGCTCTGGGAAATACAGAATCAAATAAAGTTTGGGTGATAGATGCTCGTATTAGTAGGCTCCTGTAAA TTGATCCACCTTTTCTTCTGGTCTTGCTGCTGTCTGGTCAGGCTGGACTGGTACATGACAAGAAATGGACTAATTTTGTC AACAATGTTTCTTCTAGTTAAAATGTCATGCAGGTAGGTAGTAGGTACACTTGAGGTGGCAACTTGATCTTGAAGTTCTA TATTGGCTAGAAATTAAGGCTCTGTTTAGTTGTGTTCTTTGAAAACAGTTTTTAGATTTGTCAAATAAAAAAAAAACTGT TTCTCATTGTAAAATTGTTATGCAAACATGGACCTTGTGATCATTGGCAAACCAGCATTCAAGCTTTCATGAATGGAGTT CCAACCGCAGCGAGTCACAATTCCTTGAATAGCAGGGTGGGGCCAATTTGAGAAGCTGTGGTGCTCAGTTCCACATGATG CAACCCTTTTTTGCTTTCTTGTATCCTTTGCTCAAAATCTTGTAGTAAACTATCTACACCCTCATTTGCATCCTTTTTTT TGAATAACCCAGATGAAGTTTATGACCAGAATTTTCAAGCCCATGAGCTAGTTCAACAAGTTGAGCATGAGTGAGCCTGG TTAGGCTTCCAAAACTTACATACAACACAGATTAATCTTGCTTAGAGTTAAGCCATATTAACCATTATGGCTCTTTTCCA GGTCTCCATGTGCCATCCTTGAAGTTTCCAACCCCAACAGAGACCAACTTCAGCAGCATAGAACTATTATAAACTAGAAA ATTAAAATGTGGTAATTTGCTAATAGGTTAACAAACCTTTAATCGACTTCCGCGTATGAAACCAAGCAATTTAGGATACC ATAGAATTGGCAAAGCTTAATCCAACCCAAGAACATCTCCCAATTCATATATATCAACAAGATGTTGGAATACACAGACT AGATTTTGTCAAATGACTAAAAATGGAAATTTTTTTCTTAAAATCATAACTAAATAAAAGACACTTAGAATTGACTCTTA CAATAGTTACGAGCAGACCTAAATTGAATGCTCAAAGAGGAAGATTAAGGCCTTTCCCAATCTCAACTCCAATCACCTGA AGTATTCCCTTGTTTATTATCTGCAAAACATACCACAATCGATCATACAAAGGAACAAGAATAAACCAATTTCCAGCTCT CTTAACCACTTTTTCTTAATTAATTCCACTATAAACGTCCACAATTTTATCAATTAAAAAACTTAAAATACTCACAAGCT CTACAATGAAAGTTCCAATGAGTCCAATCATGCAAGCTCTAGAGTTCCATACTTCTGCTGTCTTTGTGAACCCAAGAAAT GGAGCTTTAAATTGCGGCTGTACTTTTGGAAATTCTACCTGAAAAAAAAAGAGAGATTCTCAACTTCTTCATGATTAACA ATATTTTTTGAAAAAAATGACAACATAAATGACAAAGTGGGATGGTTAATTAAGAAGCAAAAAACTAAATGCATACGTAC ACCGGCAGGGGGCTTTGCTGCTGCTTGGACACGGAAGAAGGAAACCCTGTTCTTGTTCTTGTGAGTTGCTGATCTATTCA AATATACTTGCTGGTTTGTAGAGTAAAATGACAATGACGACCGTAATATGATTGATGAGGTAGCCATGGTTATGCTTGAT TCTCGATCACTCTAGTCTGGTCTGCTACGCTTATCTAATTATTTTTGCCATTGTGGTTCAAATTGGAAGAAGATAAGAAT CGGACCCACTGCACACGTGTAAGCATAACATCGGTTGATATGCATAACCGAATATGCTATAGCTTGATTTAATTTTTT
CDS sequence (LotjaGi1g1v0579600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTCGCGTAGCAGCAAAGTTGTCATCAAGAGGTTCTTGTTCTTCCACTGCTATTGCCGCTTTCGCAGTAAAACCATC TCCAATTTCCTGCACCAGACCTTCTCCCCTTGCAGCTTCATCGTTCAGGTCATTTAGTAATGGCTTGGAGTTGGACAAAA ACATGGCAGTCCCTGATGCTGTTCGTATGATCAACTACGCAATGAAACAAGCTAGGACTGACAAATCAGTTGGGTCGTAC GGTCTAGGTATGCTGGTGTTGAAGCATTGCGTTACAACTGAGTTAACTGAGGGCGAAGACCCACAACATGAGAATTCGAA AGGAATTGCTTTGCTTGCTTGGTCCACTTTGTTGTCTGAAAGAGGAGAGTATGGTGATGCAATAGAGAAGCTCCAGAGTG TTCAAGAATTGACCAATTCTTTGTTGGGGGTTAGAGTTGCTGCCTTTGAAGCCGAGGCTGGGCTTCATCTCGAGTTGGGG CAGGATGATATGGCATCAGCAGTGGGGGACAAATGCATAGAGCTCCTAGAGAAACAGAATGCTGAAGACTCTGAGGCTCT AAAGGTTCGTGCTAAAGCACTGAAAGGGCTTATTGAACTTGTCAAGGGCAATATTGAGTCAGCTGAAGCCTTCTTTGACA AATCTCTGCTCAGCACCCTATGTGATGGCTCTGCTGCTCTATCATATGGGGAATTCCTTCAAACAAAGCACAATTATTCA ATGGCAAAAGAGGTTTACCAGAACATCATACAAGGAGCCACTACAATAAAAAATAGTGGCAATCCATACTTAGGAGCTGG TAACATGAACTTGGAGGGTTTAATGATGGGGGCCATGTGTGCTTTAGGACAGCTTGAGTCACATTTGGGTAACTTTGGTA ACGCAGAACAGCATTTGACAAAGGCTTTAAATCAGGCTGAGGAAACCTATGGTGATCGTCATCCCAAGGTGGGTGTTGTC TTAACAAGTATAGCTCTCATGTATAGGCGTAAAGCAATGCAGGAGCATTCAAGTTCAATTTTGGTGCAAGAGGGTCTCTA TAGAAGAGTGACAGATCTTCTGAAGGTTCCACCAGGTGAAACTGATTCGGAAGGTGCGGTACCATTGGTAGATAGAAGTG ACATAGCAGCTCTTGCAAGAGGTGCATATTCTGAAGTACTTAGCATCCAAGAAAATAGAAAGGATGAAGGAGAGAAGATG AAGAACTTTGCTGAGGCTATATGGAGAAACCACAGGATGTCTCTAGATGATGCTCTGGGAAATACAGAATCAAATAAAGT TTGGGTGATAGATGCTCGTATTAGTAGGCTCCTGTAA
Protein sequence (LotjaGi1g1v0579600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFRVAAKLSSRGSCSSTAIAAFAVKPSPISCTRPSPLAASSFRSFSNGLELDKNMAVPDAVRMINYAMKQARTDKSVGSY GLGMLVLKHCVTTELTEGEDPQHENSKGIALLAWSTLLSERGEYGDAIEKLQSVQELTNSLLGVRVAAFEAEAGLHLELG QDDMASAVGDKCIELLEKQNAEDSEALKVRAKALKGLIELVKGNIESAEAFFDKSLLSTLCDGSAALSYGEFLQTKHNYS MAKEVYQNIIQGATTIKNSGNPYLGAGNMNLEGLMMGAMCALGQLESHLGNFGNAEQHLTKALNQAEETYGDRHPKVGVV LTSIALMYRRKAMQEHSSSILVQEGLYRRVTDLLKVPPGETDSEGAVPLVDRSDIAALARGAYSEVLSIQENRKDEGEKM KNFAEAIWRNHRMSLDDALGNTESNKVWVIDARISRLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 438 | 438 | 1.9E-171 | – | |
| SignalP_GRAM_POSITIVE | 1 | 20 | 20 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 20 | 20 | - | – | |
| Gene3D | 43 | 258 | 216 | 5.1E-8 | ||
| SUPERFAMILY | 111 | 306 | 196 | 2.45E-9 | ||
| Gene3D | 272 | 413 | 142 | 4.6E-7 | ||
| Pfam | 278 | 334 | 57 | 1.7E-8 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0579600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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