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LotjaGi1g1v0580900.1

Overview

Field Value
Gene ID LotjaGi1g1v0580900
Transcript ID LotjaGi1g1v0580900.1
Lotus japonicus genome version Gifu v1.2
Description Basic helix-loop-helix (BHLH) DNA-binding superfamily protein; TAIR: AT3G56970.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9M1K1|ORG2_ARATH Transcription factor ORG2; TrEMBL-Plants: tr|I3T1X1|I3T1X1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0580900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:112036266..112039632) extracted from Lotus japonicus Gifu genome v1.2.

CTTTAATTTTATTATGTTTTTAAATGGCCACTAATTATTAATTCATCTAACAATATGAATATACGTGCGCTGACCTGAAG GATGATACACAAAACGGAACTCATGTGTCTTGTTCCGTTCCCTTCCCACCTGTCTACCAAACACTACCTTACATTGTATA CATTATATTATATGTATATATAAGCCATGATCATCTCTATAGTTATGTAAGCAATTAAGAACAAATCCCATCATGCTAAG ATTCCCCTCTCCTGTGTTCTCATACTCAAACATGGAATGTCTCTTAGATGATGAACCCTTTAATCATAACCAGAACAACT TCAATAAAGAAAGGGTGTCCTCATCAGAGTACTCATTTCCAAATCAACCACAGCCTGCAGTAGTACTGCAAGCTAAGGTG GTGGAAATGTTAACTGCTCCATCCCCAGACACCAAGAAACTTAACCACAATGCTAGTGAACGTGATCGCCGCAAAAAGAT CAATAGCTTGATTGCTTCACTTCGTTCACTGCTTCCTGCAGGGCAAGATCAAATGGTACTTAGCTTTTCTCTTAATTTAA TTTCTCCTTATAGAAATTTCTTAATTAAATTGATATTTGTAAAGAATAAAGATGTTATTAATATTGTTGCAGAAAAAAAT GAGCATTCCGGCCACAATTTCTGGAGTCATAAAGTATTTACCAGAGTTACAACAGCAAGTAAAAGGACTAACTAAGAAAA AAGAGAAGCTTCTATCAAGAATTTCTCAGCAAGGAGATGCAGTAAACGAAGAATCTCGAAAAAGGAAGAAGTTTATTAAT CCCCATCACAACTCTGCAGATTTTATAGTTTCAAATAGCTGGCTCAATGATTGTGAGGCTGCAATTCATATTATTTCCTC TAATTATGAGGAGGCTCACAATCACAAGACTCCACTGCCCGAGATCATACTGTGTTTAGAAAATAATGGGTATTTTCTGC TAAATGCTTCTTCTACTGAAACCTTTGGAGGAAGTCTTCTACATCTTGCATTTTCAAGTATGTTTGTTTATACTTTATAC TGTTTCTTCTTGTACTTCTTCTTTTATATGTTGTTATTGTTAATTGGTTATTTGTTTGAGAATTGTTTCCGTTTCAATAC TAATTAATTAAGGGGTTTGCATGCGCAGGTGGAAAAAACTCATAGATTAGAGTCTGATATTATAACTCAGAAGCTTTTGT CAATATATGAGAAGAAGCAAAGAATGTTCTAGTCATATATTATAAGTGTTGGCTCAAATTATGAAGAACCAAATGATCTT CACTACTCTGATATTAAGTTTGCGTAACAGTTGTATATATTTGGGAAAGCACGGATGGCAGGCTTATAGTGTTTTTTTTT TCTTTGATCCTAATGTTTCAATCCGTTCTCAAAAGTATAAATGTTTCTGAATAAATTATTTTCCTGAGGTTCGAACTTCT GTTATCATTCTTATAATGTTTTAACTTGCTTACACTGGGGGAGCTTTGTAGAAAGCATAGGAGTAAATAAACTCTCACTG TATTGATAATGAAAGTATAGTTAGGTTTATATACAAGTTTAGCTGTGTAACAAACTCTAACAGAATGCTTAGCTGTCCTA ACAAACTCTTAACAAACAAACTAACTATATACAAATATACAAGTTTAATAAGCTTCACCAATTTAATTAGCTTGCAGGGG ACAGGATGAGCACATGTGAAGAAAATTATCATGGAACACAAATCTTAAATAAAAAAAGAACCAATGTTTCAAAAGACAGT AGAAAATCATGAAAACAATACAACATCACTTCTACTTATTAGCTCAAACAGACTTATGTTTGGTTTTATGAAACTGCTTA GTTTCTTTTTATACACTAATTGTCTCCCATATATGTTACCAGGGAAGGTTTTGTTCGAAAGTTTAAGAAGTAAAAGTCAG CACAATAATATCTTACACAGGCATAGGCACCTTGTATATGTCATGATGTCCATCGATCAAATGCATATATACTAAAAGAC AATTGAATAAGTGTTTAAATTCCACACCAACTGCCAAAATAATTAATTTAACACACTTATGAAGTGTTCTACCTAGTATA TATCTCAGCCAAAAATCGTCTGCTCGGCCAAAAGAGTTCGGCCAAAAGTGGTCAGCCATTTTATCACAGCTACAATATCT CAACTAAGTTTTGGTTAAGCCAAACTGACAACCCAAACAGTAATAATTAAGTCTCAAATATTGAGCACTCCACTCCTATA TATACATGTTTTGTCATTTCTACATATAAACATCACTCATTTGCTAATTTTTTAGTTCTTCTTAGACTTTTGAGTATCGG AGGAGTTTATTACGGTCATCTAAAAACTTGTGCAAGGTTGCACCAAGCACTTTTGACCTATGGTAGCAGGTTTTGTAGGT AATTCCCATTTTTTTAAAATACAAATATTTAATATATTATGGTATAATTAGGGAAATAGTTAGTGAATGATTATAGTTAA GTGGGTGTGGTAACAGTTCTTCACTTCCAGAAATTCATCTTCATCATCCATCTTCTTCATTCCCCAGATTTTGGAAAAAA AAAATTGGATCAAGAAATCAGTGGGTTTTAACACCACCGTAATTCTTCATCTTCCCCAAACAAATGGCAAAAGAAAAGCT GAAGGGAAGAAAAATATGAAAAGAAACACAAACACGAATGAACAGGGTTCAAGTTCAGAGACAAAAAAACACAAAAGTGT TGTTGCTCAAGACCAAATGGTATCACCAAATCCAGAAACCCTCGCCAACCATTGAGATGAATAAAATTAATAAATATATA TAGACAGTGGAAGTGAAATTCATCAAGAATGAACCAAATCAAAATCCAAATACAACAACCAACCCCAAAATCCAGAAAAA TCAGAACAAGAATAAGACCCACCAACCCCCAACAACCCAGAAGCCCTCACCCACACACCACAACAGGAGAAAGAGAGAAG ATGTTAGAGTGGAAAAATCAAAACTTTTCCTTGTCACATGCCAGATTCGAACTCATCTCTGCCAGATTCATCATCACTCC TCCCTTTCCCTTTTCTCTTCAGATCTAGAGCTTGTGGCGGCGCGAGAGAGGAGCGGCGTATTGGAACTCGTGAGGGAGAC CGACGCTGGAACCGGCAACAGAGGAGGAGCGTGGCGGCAGCGCTGTTTTGTGAGGAAAAAAAGGAGAAAAGGTTGAGAAG GAAGGAAACGAAAGAAGATGAAAGGAGGTTGCTAGGTCAATTGGTTCTGGAAAAGATTCTGGAGATTGTATTTTTTATTT TGGAGAAATAATTTATTTAGTATTAGAGGATGGAGAGAGAGATGGATCTGATGTAGTATTAATTAACCTAACCCATTTTA ATTTTCT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0580900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTAAGATTCCCCTCTCCTGTGTTCTCATACTCAAACATGGAATGTCTCTTAGATGATGAACCCTTTAATCATAACCA GAACAACTTCAATAAAGAAAGGGTGTCCTCATCAGAGTACTCATTTCCAAATCAACCACAGCCTGCAGTAGTACTGCAAG CTAAGGTGGTGGAAATGTTAACTGCTCCATCCCCAGACACCAAGAAACTTAACCACAATGCTAGTGAACGTGATCGCCGC AAAAAGATCAATAGCTTGATTGCTTCACTTCGTTCACTGCTTCCTGCAGGGCAAGATCAAATGAAAAAAATGAGCATTCC GGCCACAATTTCTGGAGTCATAAAGTATTTACCAGAGTTACAACAGCAAGTAAAAGGACTAACTAAGAAAAAAGAGAAGC TTCTATCAAGAATTTCTCAGCAAGGAGATGCAGTAAACGAAGAATCTCGAAAAAGGAAGAAGTTTATTAATCCCCATCAC AACTCTGCAGATTTTATAGTTTCAAATAGCTGGCTCAATGATTGTGAGGCTGCAATTCATATTATTTCCTCTAATTATGA GGAGGCTCACAATCACAAGACTCCACTGCCCGAGATCATACTGTGTTTAGAAAATAATGGGTATTTTCTGCTAAATGCTT CTTCTACTGAAACCTTTGGAGGAAGTCTTCTACATCTTGCATTTTCAAGTGGAAAAAACTCATAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0580900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLRFPSPVFSYSNMECLLDDEPFNHNQNNFNKERVSSSEYSFPNQPQPAVVLQAKVVEMLTAPSPDTKKLNHNASERDRR KKINSLIASLRSLLPAGQDQMKKMSIPATISGVIKYLPELQQQVKGLTKKKEKLLSRISQQGDAVNEESRKRKKFINPHH NSADFIVSNSWLNDCEAAIHIISSNYEEAHNHKTPLPEIILCLENNGYFLLNASSTETFGGSLLHLAFSSGKNS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13935:SF91
4 225 222 7.0E-68 –
PANTHER
PTHR13935
4 225 222 7.0E-68
IPR015660
Gene3D
G3DSA:4.10.280.10
61 156 96 6.5E-15
IPR036638
SUPERFAMILY
SSF47459
66 139 74 7.59E-15
IPR036638
ProSiteProfiles
PS50888
67 120 54 14.627
IPR011598
Pfam
PF00010
68 121 54 2.1E-11
IPR011598
CDD
cd00083
68 125 58 2.73837E-11
IPR011598
SMART
SM00353
73 126 54 2.3E-9
IPR011598
Coils
Coil
117 137 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006357
Biological process Regulation of transcription by RNA polymerase II Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.
Subterm of
Regulates
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0580900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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