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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0583600 |
| Transcript ID | LotjaGi1g1v0583600.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 30S ribosomal protein S15; TAIR: AT3G47700.1 RINT-1 / TIP-1 family; Swiss-Prot: sp|Q9STU3|MAG2_ARATH RINT1-like protein MAG2; TrEMBL-Plants: tr|A0A1J7GL55|A0A1J7GL55_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0583600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:112287658..112291708) extracted from Lotus japonicus Gifu genome v1.2.
GGCTTGAATTGGATCTACCCAAAACCAATTAACGTCCGTCAAAAGGTTCATCGACTGAGGCTCATCGGAATCCGATATCG GCAACCTCCACTTACGGCGGCGAGGAACCTTCGAGATCTTCGGAACTCGAATTTCGACGATGGAGTGGCTCCAAACTCTA CCACCACCCTCTAACCTCTCACACTCCGCACGCTCCTTCCTCGACGGCAAATTCCACACCAAAACCACCCTCGCCGGGGC TACCACTTTCGTCGCCGAGCTCCAAACTCAGTGCTCCGAGTTGGATCGGGCTCTGGCCAAGTTGACTCTGCGACTTGGAA CGGGTCTCGCCGCGTACGCCTCCTTCTCCGGTGAAATTCACAGGCTCTTCGGCGACGTCACTGCTGGATTGAACGCCATC TCCTCCACTTGCTCCTCCAGCGTTGTGCCAGGTTCGGTTCGCGTCTCGATTCAATGATTTTTTGTTTTGGTGTTTGAATT TTGAGAGATGTTTTGATTTCGTTGAGTGAAGAGGGAGGAACAGGTGAAGGAGATGGCAATGAAGGGAAGGGTTTCAGAGA GGAACTTGCGACTTTGGCAAAGGAAGTGGCTAGGTTGGAGACTGTTCGTGTTTATGCAGGTTCGTTTGAAATGGTTTTTT AAATTGTGTGGATGGATGAACATTGTATGCAGAATTTTGAGATCATATTTTTGTTGAAGTGATTGTGTTTTATTGTGCTA TGATACTGGTTGTTGTAATTGTCAGGAGATTTGATTCTTTTTATTTTTTGTGCGAAAACATATTTGATTCTTAAATGTTA ACTTTTCTTGTGGTAAATGGAGTTAGTTTCTTAAGAATCCATTGCAGTGTCTGCCAGATGCAGCTATAGACTGCATGCTT TCAGTGCAGAATTGAAGAACATAGTGGGAAGAATGCAAGATGATGTTTTTGAATTGTGCAAATCAAAGAACATTTTGACA ACAATTGCATGGTGATGTTTTTGTTTAAATATTTATGTTTATGTGACCTTTTTTGTATGGGTTTGTTGTGATTATCAAAA AATATTAAGCTTTCTCCACGATGGTTATTGCCTTTGGTGTATGATTTCATAGCATTGCCGTTTCTGTTGGTGTTGTTATT CCAGGGACAGAACTAAAGCTTGATAGTTGATACTTATATTTTTAACTTAAAGAACATTATGGGAAGGATGGGAGATGATG TTTTTCTTGGAATATGTTTCAATACTTCTTATGATATGTGTTTGTTGTGTTTATCAAGGAAAAACTTGCTTTTTAGTGAT GATTATCAGAATGCCTAAACTTTGATTCCTAGGGTATTGCCTTTTAGTCAATGTTGTTTGTTTCTTAAAACTCCTTTGTG TATCTTCCAGAGACAGCATTGAAACTTGATACTTTGGTTGGTGATATTGAGGATGCTGTGTCTAATGCCATGAACAAAAA CCTAAGGAAGCATTCTTCTAACCAAAATTCAGAAGTGAGCACACTTTCATGATATGAAGTAGATGTTATTGGTGAACTGT GGAATTACTATATTGAATAACATATCCTCAAATGTTGCAGGAAGTGCGTTTGGTTGCTGCTACTAAAACGCTTAAGAAGA CTGAAGAAATATTAACTTCGATTACAAAGACACACCATCAATGGAAGCATCTTGTATCAGCGGTTGATCATAGAGTAGAC CGAGCTCTGGCCATGTTAAGACCCCATGCAGTTGCTGATCATCGTGCACTTCTTGCTTCGCTTGGATGGCCCCCACCTCT TTCTTCTTTAACCTCCTCGCACTCAGATGCAAGGATTGGGAACCAAGTCTTGAATCCTCTAATGAGCATGCAAGCGAATC TTAAACTCAAGTACACTGAAAATTTTCTTGCTTTGTGCCACCTACAGGAGTTGCAAAGGCAAAGGAAATGTAGGCAACTT AAGGGCCATCACAGGGAAGTTGCTCTACGACAACCACTTTGGGTAATTGAAGAGCTTGTGAATCCCTTGACATTGGCTTC GCAGCGACATTTCTCAAAATGGGTTGATAAACCAGAATTCATTTTTACTCTTGTATATAAGATCACAAGGGATTATGTGG ACTCTATGGATGAAATGTTGCAACCATTGGTCGATGAAGCAAATCTAGTTGGCTATAGTTGCAGAGAAGAATGGATATCA GCAATGGTATCCTCTTTATCCACATACCTGGCAAAAGAAATTTTCCCTAGTTACATTAATCAACTAGATGAGGAAAGTGT GACAGACATTCAGTCATCTGCTAGAATATCATGGCTGCATCTCATTGACTTGATGATAGCTTTTGACAAAAGGATTAAGT CTTTGGTAGAGTGTTCTGGGATTTCGCTATCCTTTGATGATGATGATATCTTGCAGAGAATTTCTTCTCTATCCGTATTT TGTGATTGTCCTGAGTGGCTTGATCAATGGGCAAAAATAGAGCTAGCTGATGCCCTAGATAAGTTGAAACCAGACATTGA AAATGAGAATACTTGGAGAAGGAAAGTTGAAGTTGTAGTTCTTTCGTCATGTACTGATGATCACAAGTCTCCTCTTATTT CCAGTGCCTTTCTTCACCAGCTAGCATCTGTTGTTGATCGTTGTCGTTCATTGCCTAGCATTACTTTGAGGTCAAAATTT CTCAGATTAGTAGGTGTGCCTATTATAAGAAAGTTTTTTGATTCCATACTTATCCGCTGCCAAGAAGCTGAAGGATTGAC TGCCTTGACTGATGATGATGCTGTAACTAAAGTTGCAATTTCCATCAATGCTGCACATTACTTTGAATCAGTTTTGAAGG AATGGTCCGAGGATGTCTTTTTCCTGGAGATGGAGATGGGGATGGATGAGGATGATAAACCGGAATTGTCAAGTAATGCT AATACAGATGAAGGGTCGCCAGAGAGTTCCAGGAGAGTTATCTTTGATGAAGAGATAAAAAAGATAGAAGAGTTCAGAAC TGAGTGGGTTGAAAAGATATCTGTAGTTATTTTGAGAGGATTTGATGCTCGATCTCGAGAATATGTGAAGAATAAAAGGC AGTGGCAAAAGGGTGAAGAAGGATGGGCGGTGTCAAAGACACTGATAGAGGCCTTGGATTACCTGCAAGGTAAGATGTCG GTTGTAGAAGTAGGTCTAAATAGTAAAGATTTTGTTGGGGTTTGGAGAAGTTTGGCAGCAGGGATTGATCGATTAATTTT TAACGGTATTCTTATAAGCAATGTAAAATTTCATAATGGTGGTGTTGAAAGATTTAGTAGTGACTTAGATGTTTTATTTG GGGTATTTGGGTCATGGTGTTTGAGGCCAGAAGGTTTTTTCCCAAAAACAAGTGAAGGTCTCAAGTTGTTGAAAATTGAC GAAAACAGAGTGCAAGAGTGTATGGCAGGGGGGACGAGATGGTTGAAGGAGAATGGGATCAGACACTTGAGTTTAACTGA AGCAGAAAAGGTTCTGAAGAGTAGAGTATTCACAACTTGAGGCTTTTTGCTTACTCTTTTGCACATGCACAGCAAAAATG GCATAGGGACAGGAGTGAACATTTTTATAAGGGGTGTTTCTTGGTGTACATGACTGTAGTCCAGCTGAACTAATTCAATT TTTTAAAGTTGCAATAGTACTTTTTTTCTTTTTTCGATTTGAATATTCTCAGTCATTGCCTTAGATACAACATACCTCAG ATCTGGGGCGAGATTGCTATTCGTGTACTTCATTGTCATTTTTACACTGGTATTTGAATTTGAAATGAACAAGGACTTTG CCTAACTCAGCTTAAGAGCTCACCTACTAAATGAATGATGGCCATTCTCTAGCAACAAGCGTTTTGGTGGCCATTCATTC TCCTTTATTGATGTCGTCATTGAAATGTTCATGGAAGTTTGAGGTCGCTCATGTTACTGAGAATTTTTGGAATGCTTATT TGTGAGAGTTCTGCTCACGCCCCTGTTTTAGAGGGAATTTTAGATCTCTTGCACCAACCTAATATCACTATATGACTATC ATTGGTTTCAACGAATCATATACTAGTATTAGGTGGTCCAGTAATCTTTAG
CDS sequence (LotjaGi1g1v0583600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTGGCTCCAAACTCTACCACCACCCTCTAACCTCTCACACTCCGCACGCTCCTTCCTCGACGGCAAATTCCACAC CAAAACCACCCTCGCCGGGGCTACCACTTTCGTCGCCGAGCTCCAAACTCAGTGCTCCGAGTTGGATCGGGCTCTGGCCA AGTTGACTCTGCGACTTGGAACGGGTCTCGCCGCGTACGCCTCCTTCTCCGGTGAAATTCACAGGCTCTTCGGCGACGTC ACTGCTGGATTGAACGCCATCTCCTCCACTTGCTCCTCCAGCGTTGTGCCAGAGGGAGGAACAGGTGAAGGAGATGGCAA TGAAGGGAAGGGTTTCAGAGAGGAACTTGCGACTTTGGCAAAGGAAGTGGCTAGGTTGGAGACTGTTCGTGTTTATGCAG AGACAGCATTGAAACTTGATACTTTGGTTGGTGATATTGAGGATGCTGTGTCTAATGCCATGAACAAAAACCTAAGGAAG CATTCTTCTAACCAAAATTCAGAAGAAGTGCGTTTGGTTGCTGCTACTAAAACGCTTAAGAAGACTGAAGAAATATTAAC TTCGATTACAAAGACACACCATCAATGGAAGCATCTTGTATCAGCGGTTGATCATAGAGTAGACCGAGCTCTGGCCATGT TAAGACCCCATGCAGTTGCTGATCATCGTGCACTTCTTGCTTCGCTTGGATGGCCCCCACCTCTTTCTTCTTTAACCTCC TCGCACTCAGATGCAAGGATTGGGAACCAAGTCTTGAATCCTCTAATGAGCATGCAAGCGAATCTTAAACTCAAGTACAC TGAAAATTTTCTTGCTTTGTGCCACCTACAGGAGTTGCAAAGGCAAAGGAAATGTAGGCAACTTAAGGGCCATCACAGGG AAGTTGCTCTACGACAACCACTTTGGGTAATTGAAGAGCTTGTGAATCCCTTGACATTGGCTTCGCAGCGACATTTCTCA AAATGGGTTGATAAACCAGAATTCATTTTTACTCTTGTATATAAGATCACAAGGGATTATGTGGACTCTATGGATGAAAT GTTGCAACCATTGGTCGATGAAGCAAATCTAGTTGGCTATAGTTGCAGAGAAGAATGGATATCAGCAATGGTATCCTCTT TATCCACATACCTGGCAAAAGAAATTTTCCCTAGTTACATTAATCAACTAGATGAGGAAAGTGTGACAGACATTCAGTCA TCTGCTAGAATATCATGGCTGCATCTCATTGACTTGATGATAGCTTTTGACAAAAGGATTAAGTCTTTGGTAGAGTGTTC TGGGATTTCGCTATCCTTTGATGATGATGATATCTTGCAGAGAATTTCTTCTCTATCCGTATTTTGTGATTGTCCTGAGT GGCTTGATCAATGGGCAAAAATAGAGCTAGCTGATGCCCTAGATAAGTTGAAACCAGACATTGAAAATGAGAATACTTGG AGAAGGAAAGTTGAAGTTGTAGTTCTTTCGTCATGTACTGATGATCACAAGTCTCCTCTTATTTCCAGTGCCTTTCTTCA CCAGCTAGCATCTGTTGTTGATCGTTGTCGTTCATTGCCTAGCATTACTTTGAGGTCAAAATTTCTCAGATTAGTAGGTG TGCCTATTATAAGAAAGTTTTTTGATTCCATACTTATCCGCTGCCAAGAAGCTGAAGGATTGACTGCCTTGACTGATGAT GATGCTGTAACTAAAGTTGCAATTTCCATCAATGCTGCACATTACTTTGAATCAGTTTTGAAGGAATGGTCCGAGGATGT CTTTTTCCTGGAGATGGAGATGGGGATGGATGAGGATGATAAACCGGAATTGTCAAGTAATGCTAATACAGATGAAGGGT CGCCAGAGAGTTCCAGGAGAGTTATCTTTGATGAAGAGATAAAAAAGATAGAAGAGTTCAGAACTGAGTGGGTTGAAAAG ATATCTGTAGTTATTTTGAGAGGATTTGATGCTCGATCTCGAGAATATGTGAAGAATAAAAGGCAGTGGCAAAAGGGTGA AGAAGGATGGGCGGTGTCAAAGACACTGATAGAGGCCTTGGATTACCTGCAAGGTAAGATGTCGGTTGTAGAAGTAGGTC TAAATAGTAAAGATTTTGTTGGGGTTTGGAGAAGTTTGGCAGCAGGGATTGATCGATTAATTTTTAACGGTATTCTTATA AGCAATGTAAAATTTCATAATGGTGGTGTTGAAAGATTTAGTAGTGACTTAGATGTTTTATTTGGGGTATTTGGGTCATG GTGTTTGAGGCCAGAAGGTTTTTTCCCAAAAACAAGTGAAGGTCTCAAGTTGTTGAAAATTGACGAAAACAGAGTGCAAG AGTGTATGGCAGGGGGGACGAGATGGTTGAAGGAGAATGGGATCAGACACTTGAGTTTAACTGAAGCAGAAAAGGTTCTG AAGAGTAGAGTATTCACAACTTGA
Protein sequence (LotjaGi1g1v0583600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEWLQTLPPPSNLSHSARSFLDGKFHTKTTLAGATTFVAELQTQCSELDRALAKLTLRLGTGLAAYASFSGEIHRLFGDV TAGLNAISSTCSSSVVPEGGTGEGDGNEGKGFREELATLAKEVARLETVRVYAETALKLDTLVGDIEDAVSNAMNKNLRK HSSNQNSEEVRLVAATKTLKKTEEILTSITKTHHQWKHLVSAVDHRVDRALAMLRPHAVADHRALLASLGWPPPLSSLTS SHSDARIGNQVLNPLMSMQANLKLKYTENFLALCHLQELQRQRKCRQLKGHHREVALRQPLWVIEELVNPLTLASQRHFS KWVDKPEFIFTLVYKITRDYVDSMDEMLQPLVDEANLVGYSCREEWISAMVSSLSTYLAKEIFPSYINQLDEESVTDIQS SARISWLHLIDLMIAFDKRIKSLVECSGISLSFDDDDILQRISSLSVFCDCPEWLDQWAKIELADALDKLKPDIENENTW RRKVEVVVLSSCTDDHKSPLISSAFLHQLASVVDRCRSLPSITLRSKFLRLVGVPIIRKFFDSILIRCQEAEGLTALTDD DAVTKVAISINAAHYFESVLKEWSEDVFFLEMEMGMDEDDKPELSSNANTDEGSPESSRRVIFDEEIKKIEEFRTEWVEK ISVVILRGFDARSREYVKNKRQWQKGEEGWAVSKTLIEALDYLQGKMSVVEVGLNSKDFVGVWRSLAAGIDRLIFNGILI SNVKFHNGGVERFSSDLDVLFGVFGSWCLRPEGFFPKTSEGLKLLKIDENRVQECMAGGTRWLKENGIRHLSLTEAEKVL KSRVFTT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 806 | 806 | 0.0 | – | |
| PANTHER | 1 | 806 | 806 | 0.0 | ||
| Coils | 38 | 58 | 21 | - | – | |
| ProSiteProfiles | 210 | 807 | 598 | 118.222 | ||
| Pfam | 302 | 803 | 502 | 1.5E-42 | ||
| MobiDBLite | 598 | 618 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Endoplasmic reticulum | The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). | ||
| Biological process | Golgi vesicle transport | The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles. |
Expression pattern of LotjaGi1g1v0583600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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