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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0584000 |
| Transcript ID | LotjaGi1g1v0584000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MADS-box transcription factor family protein; TAIR: AT3G05860.2 MADS-box transcription factor family protein; Swiss-Prot: sp|Q9FJK3|AGL80_ARATH Agamous-like MADS-box protein AGL80; TrEMBL-Plants: tr|G7JY85|G7JY85_MEDTR MADS-box transcription factor family protein; Found in the gene: LotjaGi1g1v0584000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:112353377..112354971) extracted from Lotus japonicus Gifu genome v1.2.
CCCGCGGTCGTTCGCATAGGCTTTTGTAGATTCAAGGATCCAATTGCATCTTGAACTTTCAATTGAAAAGGTATTCCTTA GTTATGATTAGTTTCTATTACATGTGAAACATTAATCTCGCTAGAACTTTAAAAACCCTTATTTCTGAGGTGTTTTTATT TTATAGTTTCCAACACATAGCTTTTGTAGTTTGTGTAAATTTGGACAATTTTCAACTGAGATGTTCCTTGTCCATTTATT TTATTATCTTGAGTTTATTTATGCATCTAACAAAATCGGTTTGAATTAATTTTGAGTTATGAATAAAAAATTTCACACTT AAAAGCTTTTGAAAAGTTGTACAACACCATATCATTTGATAGTCTAGACAATACATTCTATGAAAATTTTCTTGTGACCA TACATTTTGTATCATGTAAATCTTTTTAATTTAAGTGACATAATTCAACCCACTCTTTAAATCCTTGTGGCGATTCAATA AATATATATCCCCACATGTATTATGTGATTGAATTTGAGTGGATGAAAAATGTAATTGTACATGATCTTTTGACCATATG AAAAATTTGTAATAACCATTTGACACATATAAAAATTTCAACTTTATATAATGTGCATATAACCTCTAATATTTAATTAT ATAATTAGTGTATAATATTTAATTACATAATTAGTGTATTCGTGCTAAATAAAATATAAATAAAATTTCAACCAGTTAAT TAAGTCTCATTATAGGAGGACTATATTAATTATTTTATAACATTAATATTGAAGTTTATTATTTCACATATCATCTATTA ATGCTAATGCATTAAAAATGCAACAACTTACCATATATGTCCTTCAATTATATTTTATAATATATACTTAAATATAGCCT TATTAAATAATGAATAATATATATATATATATATATATTTTCTAATTTTTTCTATGAAAATATATTTACTGAAATAGGTA TATATTTAGTTTCAATTAAAGCACATTAAATAGCTCTTTATAACAAATAGTTAGCATCGAAAGATATAATGCATAAATTG TTCTTAATTCTCATTATTTTCTTTGTGATTAAGCTATGACTAGGGCCAAGGTTGAACTTGCTTATATCGCTGATCATTCG TTAAGGAAAGCAACATTCAATAAAAGGAAGAATGATATCATAAAGAAGTTGAAAGAGCTCACTTTTCTCACTGGGTTACG AGCTTGTGCAATAATTTCCAGTGTTTTCAATGCACCCCCTGAGGTTTGGCCAAATACAGAGGAAGCTATGGATGTGGTTG AGAAGTATCATGATGCACCCGCACTGAATGAAAGTGATAATTTGCACCCACTTAGCTTCATGATGCAAACCATTTCCAAA CTCCAAGATGTTCTGGAAAAGAAGCTTCGTAGGATTCGTGAGGATGAGCTAACTATGGTTATGTTCAACTATATGGAAGA CAAAACCTTGCCAGAAGATCTGAGTTTTGAAGACTGTAATATTATCAACGAGTTAGTTCAAAAGAAAATCGAGGAAATTG ATTTGAAGATCGCTATGCTTAGTTAAAAAATATTGTAAGACCCTCAATTTATTAAATAAATTAGTATGAAATAAC
CDS sequence (LotjaGi1g1v0584000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTAGGGCCAAGGTTGAACTTGCTTATATCGCTGATCATTCGTTAAGGAAAGCAACATTCAATAAAAGGAAGAATGA TATCATAAAGAAGTTGAAAGAGCTCACTTTTCTCACTGGGTTACGAGCTTGTGCAATAATTTCCAGTGTTTTCAATGCAC CCCCTGAGGTTTGGCCAAATACAGAGGAAGCTATGGATGTGGTTGAGAAGTATCATGATGCACCCGCACTGAATGAAAGT GATAATTTGCACCCACTTAGCTTCATGATGCAAACCATTTCCAAACTCCAAGATGTTCTGGAAAAGAAGCTTCGTAGGAT TCGTGAGGATGAGCTAACTATGGTTATGTTCAACTATATGGAAGACAAAACCTTGCCAGAAGATCTGAGTTTTGAAGACT GTAATATTATCAACGAGTTAGTTCAAAAGAAAATCGAGGAAATTGATTTGAAGATCGCTATGCTTAGTTAA
Protein sequence (LotjaGi1g1v0584000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTRAKVELAYIADHSLRKATFNKRKNDIIKKLKELTFLTGLRACAIISSVFNAPPEVWPNTEEAMDVVEKYHDAPALNES DNLHPLSFMMQTISKLQDVLEKKLRRIREDELTMVMFNYMEDKTLPEDLSFEDCNIINELVQKKIEEIDLKIAMLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 84 | 84 | 4.19E-17 | ||
| SMART | 1 | 60 | 60 | 4.9E-13 | ||
| ProSiteProfiles | 1 | 49 | 49 | 14.283 | ||
| CDD | 2 | 85 | 84 | 3.09748E-18 | ||
| PRINTS | 3 | 23 | 21 | 4.0E-6 | ||
| PANTHER | 5 | 152 | 148 | 7.7E-31 | – | |
| PANTHER | 5 | 152 | 148 | 7.7E-31 | – | |
| Pfam | 11 | 49 | 39 | 1.1E-9 | ||
| Gene3D | 13 | 96 | 84 | 1.0E-7 | ||
| PRINTS | 23 | 38 | 16 | 4.0E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units. | ||
| Molecular function | Proximal promoter sequence-specific DNA binding | Interacting selectively and non-covalently with a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in the proximal promoter. The proximal promoter is in cis with and relatively close to the core promoter. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Positive regulation of transcription by RNA polymerase II | Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi1g1v0584000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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