Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0584200 |
| Transcript ID | LotjaGi1g1v0584200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | B3 domain-containing protein; TAIR: AT3G18990.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|A0A1J7GFI2|A0A1J7GFI2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0584200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:112373462..112377678) extracted from Lotus japonicus Gifu genome v1.2.
CAAACATTCAGTAACCCTTTTCTCATGGTTGAGTCTAGGGCGGCTAGGGATATCACTGTTTTTCTGGGATCAATGAAATA TAGTGTTTTGACCCCAAAAAAATAAAGGACCATAAATGACCTTGTTTAGGATGAGATGGAACACTGCATAGGAAATCTCC AAGAAATGATATTTTCATTAAAGTTCTCCTTTTTCAATGAGCTTTTTCCTTCCCCTATACTGCAACTTTTGATATCCCAC ACTTCCCACATGAAAGAAATTAAAGAAATAGAAAAAATTGTCTCTTCATTTTCCAGATTTATCTCCACTATGGAATAAAT TATTATATTCAAATTCATCCAGTTACTTCCTTCAAACACATATCCTTACTATCCTTTGCCATATTATCCTCCACCCACTC AAGCAATAAACAAGCCGCACCCCTATATATAATTTGACCATTAGTATTCTTTGTGACTAGATTCCATCTTCATATATCTG GCCTATTTTCTTTCACAGAAAAACTCTAGCTTAGAACAATGAGACATTCTCAAAGGCTTGATAATAAGAGCAATGGCGTT CACTTTTTCAAGATTATTCTTGAAAGAAGCCTTCAAAGTGGAGAACTGGTAAGAACCTATTTGCACTTCATTTTCCTTTC TTTTTTGGATTGGAATTTTTTAACAATCACTTTTAGGCCTCCATAGAAATCAACAAAATTCATAGCTTATTATTCATATA TTTTTTGTCACACTTCATGCCTATATAACATTGTTGTGGTACTATGTGCATGTTTTGAAACACCTCTATAATTGATTCTT GATACTGAATGCCAGAATAATTCTGGGTAGAAGCTTCTATAGGTATTAGGTAGCTATTCAATAATTATTTTGATAATAGA AAACTTGATGCTAGAATTTGTTTTTCCCTTTCAATTTTGATGCTATTAGTATTGAAAAATCCATTATAATTATATTGACA ATAAGTGTGTGACAGATGGTGCCCAAAAGTTTTGTGAAGAATCACTGGCAAGGAATATCGACCTCTGTTTCTCTAATCCT TCCAAACAAGACTAAATGGAAAGTTTATTGGATGAAACGTGACGGTGATGTTTATTTTCACAATGGTTGGAAAGAATTCG CAGAATACATATCTTTGGAAGTGGCACAGTTTGTGGTGTTTCAATATGAAGGAAAATCCCGGTTCAATGTGATTGTGTTT GGCAAGAGTGGCATAGAAATAAAATACCCTTCCAAAGATAACAATACACTTGAAGAATGTGAAGAGGTTCATGAAAGTGA TCTTGTTGCGGAGGGTAAAAGGGGAAAACCCAAACCTGCATCACCACCTTATAAGAAGATGAAAACAAGTCCAAAAGAAG AAGAGCATCCAAGTTTTTACTATGCTAAGCATAGCAACAGTGGTTGATTTTCTTCTCTCTGTCTCTCATGTTGTTCTGTT CTGTTTGTTTCTCTTTTTTTTTGTTCTTTTTTGTTGAAGTGTGGTAACCTACTAAAAATGTTTGGCCTTTTTTTTGTTTC TGGGTTAACTACTCAGAATTTGTTGCAGGAAGTGGCAATGAACTTAAGGAGAGAAGTAGAGCTCTTGTTGAAAAATTAAA GCTTAAACACTGTGACAGTCAAACCTTCGTACAAACAATCCACAAATCATACATTGGGAGAGATCTTCTGGTAACAAAAT ATATTATTTGATGAAGTTCATTATTCTTTTCATATTCTTGATTATTTAGTCAATCTCATATCTGCTAGAGATCTGATGTA GATAGCATTTATAGATAGTATAGTAACCACTAGCTCACTAGTTTTTGGGCCAAATTCAAATATTTGAGTCTTTTATTTTT TTGCTACATTAATTGGAAGATTTTTTAATATTTGAGTCTATGTTAGGTAACAAGTAAATTTTGTTCATGTTTAGAAATTA TTAATATTGTACAATTAATTTAAAAGTTAAAATCAATTGTGGGAAGAAATTTATGGAAGTTTTTGGGTGTAAAAAATAAT TAATTCAAACATGCTATTTCACATTCCAGAGAAGTAATTAATTCTAATAAAGCTAATGAGAGTAGATTTCCTGGGAAAAA ATAGTAATGAAATGGGTTGGATTTATGTGTTAGGCATATCACAAGACAAGTTTATAGATGCTCACAAATTGCTTGAATTC ATCCACTTTGTTAGTGACTCATTTTAGTGAAAAAAAATTGATTTCATAGTAATTGGTTTTTTTTTTAATTGAGATTGTGA TTGGATGCATATGCATGGGCCAAAGTTAATTATTTAAATCTCAATAATTTAATTTCAAATTAATATCAATAATTCATTAC AAATTCTGATACTAAGGATTTTCTTTGAAAACCAATATGTAATATCAGATCATTCCAAACGACTTTTATAACCTGAATCT GTACAAGATGGAAGGACAAATGGCTAGACTTTTTGTTAACAAGGAGAGAACTTGGGATGTGGAGTTAAAGCTCTATTCCG GTGGTCAAATCATATTTGGACGTGGTTGGAGGACATTTTTGTGTGACAATAATTTGAAATTGGGTGATGTTTGTGCTTTT GTGCTAAACAAATCCAATGGAGTTTTATTTCAAGTTTTTATTTATCCTCTCCACGAGTACCCATGCCATCTCCCTTTTCA AGGTAATTTATTTGCTTTATCATAAATTCTTGTTATCATCTTCTATCTCATTACACTTTTTAGTATCTATAGGAATATAG GAATAAGAATTCCTTTCCCCCTAACTTATGAGATTTGAATTAAGAAATTTAAAAAATATTTATGGAGGATGAATAAGCCG GGGACCTAGGGATTCTCTTCCCCAAATTTAAGATATTGAAAAAATCTACTATTAAATTGTTAGTTTTAGAAAAGAAAATG TTAATTGTTCAGGTTAATTTAAAAAATAGAATTTTTTAAAAAATATTTGGTTCCTTGTAATTGTTCAGGTTAATTGTTAA TAATTAAAAATAGAAATTTTTAAAAAATAATTGTCAAAATAGTTCGTATATACTCCCATCGTTCCTTTTTATCTGTGTTT TATCTCTCCTTATTTATTGTTCTGATAAGGATATTAGTTGTAAAAACATCATTTAATGCTATCTTGAAATGCTAAATGAA TAGTTAAATATGAACAAATTATTTTTCTCAAAGTGGACAGATAAATAGGAACGGAGGGAGTAGTATATACCCTTTTATTC ATCTCTCCATTATGCCTTATATGCAATTGACATGATTAGAGTTGTCTAATTCACCACATGAGATTATTTAATTTCACTTC CCATTGAGAATAAGTGGATTATGAATTTAACACAATATTTACTTTCATAATAGTCCTATTGGTTGACTGGTCGATTTTAG GATGAGATAAACTGTTTCATTGAGTAAGTTAGACAAATCCAACATCATGAGAAATGCAACATTTTTTTTTTTTATTCTTT CTTTGAAATAACATTCTGAAATCATGTTTCTTCTTTTGCATTTTCCTCTTTGTTCAATACTAGAAGGGCTTTCTCAAAGG CCTTCATCTCTCAAAATCCCTGATATTATTAAAGACAAAAGCAGATTAATGTCAGAAGATGGTTTCGACATCCACATCAA ACCTTCAATGAACGGGCAGGCGGTATGATCAATTAACTCATGTATATATAAGAAGACTTTCAACCTATTTTGATCAATGA ATACCAATAAGTACTTATTTGGGTTTATCTAGTGCTTTTTAATAGATACGGTCCACTAAATATTATTTGGTCCATATTTA AATGAGTTCTATATATACGATTGAATATTTTGATCACTTTTTTTCAATTGCAGTGCATACCAATGACCTTTATAAAGAAA TTCCTTTCAGAAAAGGACAATGGAAGATTCGTAACCTTACGAGTTGGGAGAAACACATGGCCCGTAAAAGTTCTTTATTA TAAATATTGTTCATCTGCTAGATTTTCTCTAGGTTGGCCTGAATTTGTGAAGGAATGTGGCTTGAAAGCTGGTGATGTTT GTCACTTCTTGATGATAGATAAGAAAAACCTTGAGCTTCAAGTTACTATAAATTAGAGAGTATGTCATTTGTTATCATGT CGCGTCGTGTTTTACCTTTCTTTTTTCCATGTCAACTACATTGATATTTGATACATTGGCTTTTGGTTGGTCTTAAGAAC TTGAAGGAATTATTAGTGTTTTTATATTCATTTTCCTATTTGTTTGTTTTGTTGGTG
CDS sequence (LotjaGi1g1v0584200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGACATTCTCAAAGGCTTGATAATAAGAGCAATGGCGTTCACTTTTTCAAGATTATTCTTGAAAGAAGCCTTCAAAG TGGAGAACTGATGGTGCCCAAAAGTTTTGTGAAGAATCACTGGCAAGGAATATCGACCTCTGTTTCTCTAATCCTTCCAA ACAAGACTAAATGGAAAGTTTATTGGATGAAACGTGACGGTGATGTTTATTTTCACAATGGTTGGAAAGAATTCGCAGAA TACATATCTTTGGAAGTGGCACAGTTTGTGGTGTTTCAATATGAAGGAAAATCCCGGTTCAATGTGATTGTGTTTGGCAA GAGTGGCATAGAAATAAAATACCCTTCCAAAGATAACAATACACTTGAAGAATGTGAAGAGGTTCATGAAAGTGATCTTG TTGCGGAGGGTAAAAGGGGAAAACCCAAACCTGCATCACCACCTTATAAGAAGATGAAAACAAGTCCAAAAGAAGAAGAG CATCCAAGTTTTTACTATGCTAAGCATAGCAACAGTGAATTTGTTGCAGGAAGTGGCAATGAACTTAAGGAGAGAAGTAG AGCTCTTGTTGAAAAATTAAAGCTTAAACACTGTGACAGTCAAACCTTCGTACAAACAATCCACAAATCATACATTGGGA GAGATCTTCTGATCATTCCAAACGACTTTTATAACCTGAATCTGTACAAGATGGAAGGACAAATGGCTAGACTTTTTGTT AACAAGGAGAGAACTTGGGATGTGGAGTTAAAGCTCTATTCCGGTGGTCAAATCATATTTGGACGTGGTTGGAGGACATT TTTGTGTGACAATAATTTGAAATTGGGTGATGTTTGTGCTTTTGTGCTAAACAAATCCAATGGAGTTTTATTTCAAGTTT TTATTTATCCTCTCCACGAGTACCCATGCCATCTCCCTTTTCAAGAAGGGCTTTCTCAAAGGCCTTCATCTCTCAAAATC CCTGATATTATTAAAGACAAAAGCAGATTAATGTCAGAAGATGGTTTCGACATCCACATCAAACCTTCAATGAACGGGCA GGCGTGCATACCAATGACCTTTATAAAGAAATTCCTTTCAGAAAAGGACAATGGAAGATTCGTAACCTTACGAGTTGGGA GAAACACATGGCCCGTAAAAGTTCTTTATTATAAATATTGTTCATCTGCTAGATTTTCTCTAGGTTGGCCTGAATTTGTG AAGGAATGTGGCTTGAAAGCTGGTGATGTTTGTCACTTCTTGATGATAGATAAGAAAAACCTTGAGCTTCAAGTTACTAT AAATTAG
Protein sequence (LotjaGi1g1v0584200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRHSQRLDNKSNGVHFFKIILERSLQSGELMVPKSFVKNHWQGISTSVSLILPNKTKWKVYWMKRDGDVYFHNGWKEFAE YISLEVAQFVVFQYEGKSRFNVIVFGKSGIEIKYPSKDNNTLEECEEVHESDLVAEGKRGKPKPASPPYKKMKTSPKEEE HPSFYYAKHSNSEFVAGSGNELKERSRALVEKLKLKHCDSQTFVQTIHKSYIGRDLLIIPNDFYNLNLYKMEGQMARLFV NKERTWDVELKLYSGGQIIFGRGWRTFLCDNNLKLGDVCAFVLNKSNGVLFQVFIYPLHEYPCHLPFQEGLSQRPSSLKI PDIIKDKSRLMSEDGFDIHIKPSMNGQACIPMTFIKKFLSEKDNGRFVTLRVGRNTWPVKVLYYKYCSSARFSLGWPEFV KECGLKAGDVCHFLMIDKKNLELQVTIN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 8 | 109 | 102 | 2.7E-23 | ||
| PANTHER | 9 | 296 | 288 | 8.1E-68 | – | |
| PANTHER | 9 | 296 | 288 | 8.1E-68 | ||
| SUPERFAMILY | 12 | 109 | 98 | 1.22E-21 | ||
| CDD | 15 | 105 | 91 | 1.05573E-13 | ||
| ProSiteProfiles | 15 | 108 | 94 | 11.942 | ||
| SMART | 16 | 108 | 93 | 1.0E-12 | ||
| Pfam | 17 | 104 | 88 | 1.3E-12 | ||
| MobiDBLite | 133 | 157 | 25 | - | – | |
| Gene3D | 182 | 301 | 120 | 1.6E-18 | ||
| SUPERFAMILY | 201 | 296 | 96 | 6.67E-18 | ||
| ProSiteProfiles | 202 | 297 | 96 | 12.59 | ||
| CDD | 203 | 297 | 95 | 2.46878E-13 | ||
| SMART | 203 | 297 | 95 | 6.2E-10 | ||
| Pfam | 204 | 288 | 85 | 1.6E-12 | ||
| Gene3D | 326 | 428 | 103 | 6.7E-18 | ||
| PANTHER | 332 | 425 | 94 | 8.1E-68 | – | |
| PANTHER | 332 | 425 | 94 | 8.1E-68 | ||
| SMART | 336 | 424 | 89 | 0.0017 | ||
| SUPERFAMILY | 340 | 425 | 86 | 4.9E-15 | ||
| Pfam | 344 | 427 | 84 | 1.0E-11 | ||
| ProSiteProfiles | 350 | 428 | 79 | 10.306 | ||
| CDD | 350 | 427 | 78 | 8.03117E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0584200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…