Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR039218
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 19 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.771s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0446100_LC.1
n.a. B3 domain-containing protein family; TAIR: AT3G18990.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|A0A072VHA4|A0A072VHA4_MEDTR B3 DNA-binding domain protein; Found in the gene: LotjaGi1g1v0446100_LC LjG1.1_chr1 94515686 94516420 +
2 domain predictions
 –
LotjaGi1g1v0584200.1
n.a. B3 domain-containing protein; TAIR: AT3G18990.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|A0A1J7GFI2|A0A1J7GFI2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0584200 LjG1.1_chr1 112373462 112377678 +
2 domain predictions
 –
LotjaGi1g1v0738400.1
n.a. B3 domain-containing protein family; TAIR: AT3G18990.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|G7L911|G7L911_MEDTR Transcriptional factor B3 family protein; Found in the gene: LotjaGi1g1v0738400 LjG1.1_chr1 131286192 131289848 -
2 domain predictions
 –
LotjaGi1g1v0738400.2
n.a. B3 domain-containing protein family; TAIR: AT3G18990.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|G7L911|G7L911_MEDTR Transcriptional factor B3 family protein; Found in the gene: LotjaGi1g1v0738400 LjG1.1_chr1 131286192 131289848 -
2 domain predictions
 –
LotjaGi2g1v0016100.1
n.a. B3 domain-containing protein family; TAIR: AT3G18990.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|A0A072VGT1|A0A072VGT1_MEDTR Plant-specific B3-DNA-binding domain protein; Found in the gene: LotjaGi2g1v0016100 LjG1.1_chr2 5608272 5611747 -
2 domain predictions
 –
LotjaGi2g1v0016500_LC.1
n.a. B3 domain-containing protein family; TAIR: AT3G18990.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|V7C811|V7C811_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0016500_LC LjG1.1_chr2 5675225 5680048 +
2 domain predictions
 –
LotjaGi2g1v0016500_LC.2
n.a. B3 domain-containing protein family; TAIR: AT3G18990.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|V7C811|V7C811_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0016500_LC LjG1.1_chr2 5675249 5680069 +
2 domain predictions
 –
LotjaGi2g1v0016500_LC.3
n.a. B3 domain-containing protein family; TAIR: AT3G18990.2 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|K7LDC5|K7LDC5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0016500_LC LjG1.1_chr2 5675384 5677445 +
2 domain predictions
 –
LotjaGi2g1v0016500_LC.4
n.a. B3 domain-containing protein family; TAIR: AT3G18990.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|G7L911|G7L911_MEDTR Transcriptional factor B3 family protein; Found in the gene: LotjaGi2g1v0016500_LC LjG1.1_chr2 5676508 5679151 +
2 domain predictions
 –
LotjaGi2g1v0016700.3
n.a. B3 domain-containing protein family; TAIR: AT3G18990.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|A0A072VGT1|A0A072VGT1_MEDTR Plant-specific B3-DNA-binding domain protein; Found in the gene: LotjaGi2g1v0016700 LjG1.1_chr2 5708615 5714713 +
2 domain predictions
 –
LotjaGi2g1v0372800_LC.1
n.a. B3 domain-containing protein; TAIR: AT1G49475.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q9XIB4|Y1475_ARATH B3 domain-containing protein At1g49475; TrEMBL-Plants: tr|A0A078CMI2|A0A078CMI2_BRANA BnaC08g02890D protein; Found in the gene: LotjaGi2g1v0372800_LC LjG1.1_chr2 86972148 86972712 +
2 domain predictions
 –
LotjaGi3g1v0347400_LC.1
n.a. B3 domain-containing protein family; TAIR: AT3G53310.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8LAV5|REM20_ARATH B3 domain-containing protein REM20; TrEMBL-Plants: tr|G7KPD8|G7KPD8_MEDTR Cathepsin propeptide inhibitor domain protein; Found in the gene: LotjaGi3g1v0347400_LC LjG1.1_chr3 72485517 72487226 -
2 domain predictions
 –
LotjaGi3g1v0462900.1
n.a. B3 domain-containing protein; TAIR: AT3G18990.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|A0A0R0EIL9|A0A0R0EIL9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0462900 LjG1.1_chr3 87822736 87824835 -
2 domain predictions
 –
LotjaGi5g1v0052900.1
n.a. B3 domain-containing protein family; TAIR: AT3G18990.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|A0A151SA86|A0A151SA86_CAJCA B3 domain-containing transcription factor VRN1; Found in the gene: LotjaGi5g1v0052900 LjG1.1_chr5 8812614 8817565 -
2 domain predictions
 –
LotjaGi5g1v0347600.1
n.a. B3 domain-containing protein; TAIR: AT3G18990.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|G8A2Z5|G8A2Z5_MEDTR Transcriptional factor B3 family protein; Found in the gene: LotjaGi5g1v0347600 LjG1.1_chr5 66390863 66392503 +
2 domain predictions
 –
LotjaGi5g1v0347700_LC.1
n.a. B3 domain-containing protein family; TAIR: AT3G18990.2 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|K7N2T6|K7N2T6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0347700_LC LjG1.1_chr5 66394057 66394557 +
2 domain predictions
 –
LotjaGi5g1v0348000_LC.1
n.a. B3 domain-containing protein family; TAIR: AT1G49475.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q9XIB4|Y1475_ARATH B3 domain-containing protein At1g49475; TrEMBL-Plants: tr|G8A2Z6|G8A2Z6_MEDTR Plant-specific B3-DNA-binding domain protein; Found in the gene: LotjaGi5g1v0348000_LC LjG1.1_chr5 66403231 66403965 +
2 domain predictions
 –
LotjaGi5g1v0348200_LC.1
n.a. B3 domain-containing protein family; TAIR: AT3G18990.2 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|A0A0L9U1V2|A0A0L9U1V2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0348200_LC LjG1.1_chr5 66416401 66417305 +
2 domain predictions
 –
LotjaGi6g1v0068600_LC.1
n.a. B3 domain-containing protein family; TAIR: AT3G18990.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|G7IAW3|G7IAW3_MEDTR Transcriptional factor B3 family protein; Found in the gene: LotjaGi6g1v0068600_LC LjG1.1_chr6 13176493 13184268 -
2 domain predictions
 –