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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0585100 |
| Transcript ID | LotjaGi1g1v0585100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein; TAIR: AT5G48850.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q8GXU5|SDI1_ARATH Protein SULFUR DEFICIENCY-INDUCED 1; TrEMBL-Plants: tr|I3S0C9|I3S0C9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0585100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:112456817..112460337) extracted from Lotus japonicus Gifu genome v1.2.
CACAAAACGACACGTGTCCCCTGGATGCATCACACGTCGCATTGTAGTCGTTGATTGATTCTAATGAACAAAGACGCAAA TGCATCCAGGTTCACAGCGTTGTTCTCATCTACTATCTTCTTACACACAGTTAGACTTTCCTTTTCCATAGTCCAAACTC GAAAGCGTGTAGTTATAACACAAGAGAGAAAAAAGAGAAACAGAAGAAACAGAGAATGAAAGAACGAAGTGGTGGTGGTT GCAGCAACTACAATTACAATTGCTCAAAAGGGAAAAAAGATGACTCTTATCATGTACTTCATAAGGTTCCTTATGGAGAT ACTCCTTATGTCAGAGCTAAACATGCTCAGGTAGCTAGCTAGCTAGCTAACAACTTATTCATTTGTCTGTTTTTGTGATT CTATATATGCTTTTTTTTTTCCAGTCCAATTATTGATTTATCTTGTACTGCTTGTTTGATGAGAGGTTCAAGATGATCCA ACTTTCATTGTTTGATTCAAGATGCATGAATCTAATGACAATCATGTTTAATTTCCTCTTTTATAAGCACCAGAGTCATC TTAGCAGTCAGGTTTTGTTTTGGGCAATGCTGTATGCTCTGTAAATATTCCTCCAAATCTTTAGATAAAAGATTTAGCGC ATTTGTTATCTTCAAAATTTATAAATAAATATTTTGTTGGATACTTTGCAAAATGGGAAATTTCAGAATTACTATTTTTT TCTCTTTTACTTTTGTTGAAGGTTGACTTTTTGTGTGTGTTAAATTTATCTCGCAATTTCAACCGGGGTGGGGTAGACCC CGCGTGTGAATTGAACTCTCGACTTAGGATTTCAAACAACCACTTTTTACTAATCCAATGTCGTCTCAGTAACTTTCTAA GGGGTGTTGAAGGTTGACTTAATCTTTCTCTTTATTTTTTTTGGTTAACTCTTAATTTTTATTTTGAAACTCATGGTTCT TAAATTCTTCTATTTCTTGAGCTTGTGATGCTTCTCAAATGCATTCTGGATTTCGTTTTTTATAAATTTATTTCTATTGG CTTTTCAATTAATCTCAAGGAAAAAAAGATATTTAGTGTAACTGTAGTTTAGTTTGAAAAGAAACTCAGATTTTGTTGCT TTGTTAATTGTTACTTCTTGATTAAGGATCTTTAATTAGCTGTGTGATAGTAATTGTGACGTGAATTTCGCAGCTGGTTG AGAAGGACCCGGAGGGTGCTATTGCATTATTTTGGAGGGCAATAAACACAGGGGACAAAGTGGACAGTGCATTGAAGGAT ATGGCAGTGGTGATGAAGCAATTAGACAGATCTGAAGAAGCCATTGAAGCTATTTGTTCATTTAGAGGACTATGCTCCAA ACAATCCCAAGAGTCCCTTGATAATGTGCTTATAGATCTTTACAAGGTAAAAACCATCTCAGCCTCTTTATAAGCCCTTC CATTTTAAACCGGTGGTTCTTTTATGTGATTAATATGTTTATTCTATGTGTTTGATTGAAATGTATATCTATTTATTCAC TGTTTTGCTTTGGTCCTTTATATTATAAGTTGTAACTTTTTTTATTACAATAAGTTGTAACTTTTAAAACAATAATAAGA AAAAAAAGGTACATATTCTCTGGCGTCAACTTTTTTACACTATAAACCAATCAAATTTTAAAGATTGGCTAATTAAAACT AAATAAAAATAGATTTTATCACATTTCTTCTAATCTAATTGGAGACTTGTTATAGGGATATGGTTTAATTACACCCACTT TCTTTTACATTTTATTTCCACCAGTTTCCGCTTTCTAACTATCTCTCCATTTACTATTACGTCACTTATTATATTTCTCG TTTCTCATACTTCTCTTCTTATCACTATCTTGTGTGGATGAAATTGGTGTGTGGATAAAGTATTATTGCTTGTTATATGG TGTGTACGGCTTGTGTTTGGTTTGTTGAAATGTCCAGTTAAATAGCAGTCAATGTGAGAAAATGTTTTGTTGACACCAGA ATAGTGATATAGAAAGAAAAATTGGGTGGAAAAAATGAGATGTTAGAGAAGCTCCGTGTGAATATTTCAAAGGTTGGTGA ATGAGGGGACTTGTCATATAATGAGTACAGCTTGCAACTGATCATTAGTTGAAATTCCTTGTTAATTAACAGATCATGAG TGTCCTTTTTTTTTTTCTTTTTTCAATTTGGGTATTGTGAATGGTGTTCTTATACTTGAGACTATTGATTAACTGTGGAT ATTTTTCATTTCATGAATGATAGAAATGTGGAAAGATAGATGAGCAAATAGAATTGTTGAAGAGAAAGCTGAAGTTGATT TATGAAGGCGAGGCATTCAATGGGAAGCTCACAAAGACAGCACGGTCCCATGGCAAGAAGTTTCAAGTTTCTATTAAACA AGAAACCTCTAGATTACTGGTATTTCATCTTAACTTTACCTAACTTTTTAAATTTCAATCATCAATTAACAAGAAAGTAA TCTTTTTTTCCTTTGCAAAAACGTAGTTTAAGGCTATAAGCATCGGGCCTTATAAAATCAACACGCATAACACACCTTTG TTATTACAAAATTGTTCATGTAATTTCGACTCAGAAATGGTGAAAATCAAATGTCTCTCTATGAGTGCAGCTTATAGGGA TTGAATATTCGACCTAAAAGTTTAAACCGCCACTTTTAATCATAGGGGTTTGCTTGTTGTTGAGTTTTTATTTGTGCTTC AACTGTTCAACATTTTTCTATTAGTGGGGCAATTAAAATTATTTTCTCTACTGACATGTCTACATGTTATTTTGCAGGGA AACTTGGGCTGGGCCTACATGCAAAAAATGAACTATGTGATGGCTGAGGCGGTGTACCGGAAAGCCCAAATGATCGATCC AGATTGTAACAAGGCTTGTAACTTGGGCCTGTGTCTCATTAAACAAGCCCGGTATGAAGAGGCGCAAACAATTATTGAAG ATGTATTAAGAGGAAATTATCCTGGCTCAGATGATAGCAAGTCAAAGAAACGAGCCCAAGATCTCCTAACAGAGTTAAGA TCTATGCTTCCTCCACCACATTTCTCAGATCTTTTAGGCCTGGATGATGAGTTCATCAAAGGCCTGGAACAGTTGATTAA TGAATGGGGCCCAATTAGATCAAGGAGACTTCCAATTTTTGAGGAGATTTCTTCATTTAGAGACCAGTTGGCATGTTAAT TATATGCTTTGTACAAAGGAACTGGCATTTCTTTCTTTTTCCTCTTTTATATAAGGGTGGAAGTTGTTTTTTCAGAAGAG GTGTATAACATAAGGTGAGGAGTGATATAGACTATAGAGTGAAGATATTGATGTAAACTAATAGAGGCTGGCAATATGCT TCTTTAGAGGTCAATTTCAATATTAAAAAAAGTTGGACATTCACTTTACTTTAGGTTGAGGAAGTGATGAGAAAAAAATC CCTCTTATGCTCTTCTTAACATGTTATTTTTTTAATGGTTGAAATTTATATTGAATGGAAAAAACAAAAATCAGAACAGG A
CDS sequence (LotjaGi1g1v0585100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGAACGAAGTGGTGGTGGTTGCAGCAACTACAATTACAATTGCTCAAAAGGGAAAAAAGATGACTCTTATCATGT ACTTCATAAGGTTCCTTATGGAGATACTCCTTATGTCAGAGCTAAACATGCTCAGCTGGTTGAGAAGGACCCGGAGGGTG CTATTGCATTATTTTGGAGGGCAATAAACACAGGGGACAAAGTGGACAGTGCATTGAAGGATATGGCAGTGGTGATGAAG CAATTAGACAGATCTGAAGAAGCCATTGAAGCTATTTGTTCATTTAGAGGACTATGCTCCAAACAATCCCAAGAGTCCCT TGATAATGTGCTTATAGATCTTTACAAGAAATGTGGAAAGATAGATGAGCAAATAGAATTGTTGAAGAGAAAGCTGAAGT TGATTTATGAAGGCGAGGCATTCAATGGGAAGCTCACAAAGACAGCACGGTCCCATGGCAAGAAGTTTCAAGTTTCTATT AAACAAGAAACCTCTAGATTACTGGGAAACTTGGGCTGGGCCTACATGCAAAAAATGAACTATGTGATGGCTGAGGCGGT GTACCGGAAAGCCCAAATGATCGATCCAGATTGTAACAAGGCTTGTAACTTGGGCCTGTGTCTCATTAAACAAGCCCGGT ATGAAGAGGCGCAAACAATTATTGAAGATGTATTAAGAGGAAATTATCCTGGCTCAGATGATAGCAAGTCAAAGAAACGA GCCCAAGATCTCCTAACAGAGTTAAGATCTATGCTTCCTCCACCACATTTCTCAGATCTTTTAGGCCTGGATGATGAGTT CATCAAAGGCCTGGAACAGTTGATTAATGAATGGGGCCCAATTAGATCAAGGAGACTTCCAATTTTTGAGGAGATTTCTT CATTTAGAGACCAGTTGGCATGTTAA
Protein sequence (LotjaGi1g1v0585100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKERSGGGCSNYNYNCSKGKKDDSYHVLHKVPYGDTPYVRAKHAQLVEKDPEGAIALFWRAINTGDKVDSALKDMAVVMK QLDRSEEAIEAICSFRGLCSKQSQESLDNVLIDLYKKCGKIDEQIELLKRKLKLIYEGEAFNGKLTKTARSHGKKFQVSI KQETSRLLGNLGWAYMQKMNYVMAEAVYRKAQMIDPDCNKACNLGLCLIKQARYEEAQTIIEDVLRGNYPGSDDSKSKKR AQDLLTELRSMLPPPHFSDLLGLDDEFIKGLEQLINEWGPIRSRRLPIFEEISSFRDQLAC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 301 | 291 | 1.1E-162 | – | |
| PANTHER | 11 | 301 | 291 | 1.1E-162 | – | |
| Gene3D | 39 | 267 | 229 | 2.9E-19 | ||
| SUPERFAMILY | 46 | 228 | 183 | 1.9E-11 | ||
| ProSiteProfiles | 165 | 198 | 34 | 8.26 | ||
| SMART | 165 | 198 | 34 | 9.3E-4 | ||
| Pfam | 166 | 198 | 33 | 7.6E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0585100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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