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LotjaGi1g1v0585900.2

Overview

Field Value
Gene ID LotjaGi1g1v0585900
Transcript ID LotjaGi1g1v0585900.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description PPPDE thiol peptidase family protein, putative; TAIR: AT3G07090.1 PPPDE putative thiol peptidase family protein; Swiss-Prot: sp|Q6ICB0|DESI1_HUMAN Desumoylating isopeptidase 1; TrEMBL-Plants: tr|C6THR3|C6THR3_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0585900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:112579411..112583300) extracted from Lotus japonicus Gifu genome v1.2.

CTTTGAATTAATAAAATGAAGAATAACACGTGGAGTTGAACTTGTGGTGAGTAGGTTCTAGAAGGTGATAGAGACTAGGA AACGGTCGTTATGGAACCAACCAGATCTCCAACACCATACCAATACGGCAATACCACTCTCTATTTAATGACATCCTCTC TCACACGGTGCGCTTTGTTTTCTTCTTGCATTCGCTCGCGCTATCTTCTCAACTTCTTTCCTTTCCATTGTGAGTTCATT GTTTATTCGTGAATTTGGATGTTATTCCTGTTGTTTTGGAGTTCGAATTTTGTATTTGTGTTCTCAATTTGGTCATGTCC CATTTGGAACAGTGTCTGGTTTTTTTTAGGGTTTGAATCCCAATTGTGGAAATTTTCATGTGGGTTTTAGATTTGATTTG TTGTTTGTTTCTTTCTTTATGTTCCTTGGCTAGGGGGACATTGTTGTTGGGATGTAATTCCCCCTTTTCATTGATGGGTT TCTGTCAATTATGGCTAATTTTGATGCTAGGGTTTTGTGGGTCAGAAATTAGGGTTGGATCATGTGCTTTTATTGATGAC AGTTTTTGTGAATTTGATATATATATATATATATATATATATATATAATATTTTTATTTTTTTTCACATGTTGTTGAGTT TATGAAATTGTGTCTTCTATGGTTGTTTTTGATTAAGCTTCATTACTGATTCTATCAGGTTATTGTGATAGGTTCTTCCA TTGGAGTATCTACAAAACTCCTTTTCAAGTGTTTTAGCAGCTGAATAATTTTTACACTAAACTGCGTTAGATGGCTGAGG TATGTGATACTGATGTACTGTGCCTAATTTTAGTTGTTTTATATTCGACATACTTCTAGTGCTTCACGGCTAATTTGTGC ATCTATCACCGCATTTGATTGCAGGAGGGTCACAGGGTTACTCTTAATGTTTATGACCTAAGCCAAGGTCTCGCTCGACA GCTTTCAACGTCCTTTTTGGGGAAAGCTATTGAAGGCATATGGTGAGTGCTTGTCTTTGCTGTTGGTCTTGTGTATAATG ATCTTGATTTAATATCATAGTTAGTTGGTGTATCCTACACAAATTGATTTGGGAGTTGTGTAATGTATGTGTTGCTGAAA TTATAACGTGGGGATTTTTACATGTGTAGTTTACAAGAACTGTTGAGCAGGACAAAGTTTTCTAAATTTTGAAACTATAT TCATTAACAATTTTTTAAGCGTTTTTATTTAGAAGAAGAGAAAATAAACAAAGAACAAGCGAAAATAACAGTTTGAAGGA GATCATGTAGGAAAACTAATCTTCAAAAGAAAACGGTGCACAGCATTTAGTATCGCTATGACAATTCTAGAGAAGACAAA TAGTGCCTTTTTAGGAAAATTTCACATTTGTGAGGGTGAAGGAAAGACGATGAATGTGAATGATGAGGAGGATGATTCTT AGAATTGGATTCCAAGACATGAAAAATTTGTGTTTAGACAGAAACATATAAACAGAATTTTGTTTTGAGACGGAAGGGTG AATGAGGAAGAGAGGGTGGTTTTTAAAGGAAAAGACTCGGTAGAGAATTTTATTTTGAGATTGCTAATAACAAACAGAAA GTTTTTTTTTCCCACACAGGCCGTAGCTATCCCCACACGCTCATTTTCTCATGAGTTTTTCACATAGTATTGAGAAAATC ACGAGTCAATGTGTGGATGGAAGATAGCTACAACTTGTGAAAATAGATTTGTGTTTGTGAGTAGCACTCTCAAAACCGGT CCACTGTCATGTTTATTCTTTGAGAACCATCTTCCTTAACCTTCTCATTAACCCTTCCTTTAAGCTCACAGACGTGTAAT CCTTCTCTAAATGAAATTCTGTTTGTGAGTAGCTCAATACAAATTCTCTAGGTCAAGTTCATTCTTTACATAAAACCAGT TCTAGGAACCATTCTCCTCATCTTTCTCATCTGCCCTTTCTTTAAGCTTGCTCACAAATGTGAACTCTCCCTACTGCTTG TTTTCTCTAGACTCTTCTGTTTGTGCAGGATGGCTCTCATTGTTTCTTTAATTGCTTTTCTCTTTTACTTTTTCCTATAA TTGTCATCAGTGAAACTGAAGGTGCTGCACCGTCTAGCTACCATAATTTTTTTAGGGGTTGTTTGGAAACTAAAAACTTA AGCATAAACATGTATCTTTTGGGATTTTAGTTTTAAAACATGGAAATAAGACTTGCTTTTTCAAAAAGGGTTCATACCAA ACAAGTTTTGTAACTAAATCGTAATCAAACAGGCTCTAAACTATAATACCTTACACATGCCTTTTCCCCTTGTATTTTTG GTTGTTTAAGTAAACTGTTTAGTGCACGATTTGTATTTTGTTGGCAATTGAAATGTTATTTGTTTGTACTGCAGGCACAC AGGAGTTGTGGTTTATGGTAACGAGTATTACTTTGGAGGTGGCATACAACATTCTCCTGCTGGATCAACACCATATGGAG CTCCACTTAGAGTGGTAGAATTAGGTGTTACACATGTGCCAAAGGATGTCTTTGAAATGTATTTGCAGGAGATCAGTCCG CGGTACTTGCCTGAAACATACAGTTTGCTTACCCACAATTGCAACAACTTCTCCAATGAAATTGCTCAATTTTTGGTTGG TTCAACCATTCCTGAGTATATCCTACAGCTCCCTAATGAAGTTATGAGCAGCCCAATGGGGGCTCTTATATGTAAGTCAT CTCCTACAATACTTACATTTAGAATTTGTGCTGGGCTGTGTACTTCCGGTAGATATATGAAAATTATCTAGTATGATATA ATGTTATGATAGAATGAAATAACTCAGGGATTTATCTAATTGTTTATGGCATGTAAAGAACTACTGAATATGGTTCTGCC TGGGATGTCATCTTCATATTTAACCGTTCAATTTTAGCTTAGCATCTCCATGTCAGTTATCTTCTTGTATCATTTTCTTT CATATGTCTGATAATCACTTTTATAGTGTGTATTTACTTCTTTTTCTTCAGAATCAATTGTGACTCTCAGAAATGACTTG TTAGAATTGATTTTGGCTAAAGAACTAACAGAAGAAAAATTTCTGAATATGCACTTAAATTATATTTACAGTTATCTTTT GAATGAATTTATCTGTCTACACTTAATTGTTTTAAGCACAATATTGGAATTACAGAATGTTTCATTAAGAAGAAAAAAAA CTATTTAAGAAGCCTTTTCTCTGTTTTGTTGATGTGCGCTTGGTTTGCCATAATCTTCGTTCAGATATTGATAACTCATT TTATTTTTTTGCAGTGCCCATGATACAGAATTTGGAGACAACATTGAAATCTGGTGGAGTGCCACAAGTACCACAGTTTA GGCCTTCGACCGTGAATCCTTCACTTTCTGCCTCAGCTAACACTCCCAAGAACCCTAGTGTTCCCAACACATCCACCACT AAGGAAGTGAGAGGCAAAGAAGATATTAGCCCTCAGAAGACAGCAACTGCAGTGTCTCCTTCTCCTTCTGCAAAGCCATC CTCTGATAATGCTGTTACAGCAGCAGATCCTCTTGGAGATGCTCGCAACAAGGTTCAAGATGAGATTATCAAAGAGTTTG CTGCGATTATGGCAACTGGGACAATGCGTGCTAGTGAGGCTGCAACACTTGCAACCAGAAGAGTCATGCAGAGATATGGT CAGATTTCTGTGTCACAGAGTTAGCAACACTAATGTTTATTTTGTCATAACAATTATGGGTCTAAAAGACTAAAAACCTT TGTTATACACTCGCTGCAACTATTTGTGGTGAATTTATCACATTGATTATGATTAAATTGGGGGGAATCATTTGAATCAC TTATGTTGGTATCTGTTTTGTGGATTTAGCCTTTTGGCCATGAAATTTTA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0585900.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGAGGAGGGTCACAGGGTTACTCTTAATGTTTATGACCTAAGCCAAGGTCTCGCTCGACAGCTTTCAACGTCCTT TTTGGGGAAAGCTATTGAAGGCATATGGCACACAGGAGTTGTGGTTTATGGTAACGAGTATTACTTTGGAGGTGGCATAC AACATTCTCCTGCTGGATCAACACCATATGGAGCTCCACTTAGAGTGGTAGAATTAGGTGTTACACATGTGCCAAAGGAT GTCTTTGAAATGTATTTGCAGGAGATCAGTCCGCGGTACTTGCCTGAAACATACAGTTTGCTTACCCACAATTGCAACAA CTTCTCCAATGAAATTGCTCAATTTTTGGTTGGTTCAACCATTCCTGAGTATATCCTACAGCTCCCTAATGAAGTTATGA GCAGCCCAATGGGGGCTCTTATATTGCCCATGATACAGAATTTGGAGACAACATTGAAATCTGGTGGAGTGCCACAAGTA CCACAGTTTAGGCCTTCGACCGTGAATCCTTCACTTTCTGCCTCAGCTAACACTCCCAAGAACCCTAGTGTTCCCAACAC ATCCACCACTAAGGAAGTGAGAGGCAAAGAAGATATTAGCCCTCAGAAGACAGCAACTGCAGTGTCTCCTTCTCCTTCTG CAAAGCCATCCTCTGATAATGCTGTTACAGCAGCAGATCCTCTTGGAGATGCTCGCAACAAGGTTCAAGATGAGATTATC AAAGAGTTTGCTGCGATTATGGCAACTGGGACAATGCGTGCTAGTGAGGCTGCAACACTTGCAACCAGAAGAGTCATGCA GAGATATGGTCAGATTTCTGTGTCACAGAGTTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0585900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAEEGHRVTLNVYDLSQGLARQLSTSFLGKAIEGIWHTGVVVYGNEYYFGGGIQHSPAGSTPYGAPLRVVELGVTHVPKD VFEMYLQEISPRYLPETYSLLTHNCNNFSNEIAQFLVGSTIPEYILQLPNEVMSSPMGALILPMIQNLETTLKSGGVPQV PQFRPSTVNPSLSASANTPKNPSVPNTSTTKEVRGKEDISPQKTATAVSPSPSAKPSSDNAVTAADPLGDARNKVQDEII KEFAAIMATGTMRASEAATLATRRVMQRYGQISVSQS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.90.1720.30
2 162 161 4.4E-63
IPR042266
PANTHER
PTHR12378:SF16
2 175 174 6.8E-111 –
PANTHER
PTHR12378
2 175 174 6.8E-111
IPR008580
SMART
SM01179
6 147 142 1.3E-61
IPR008580
Pfam
PF05903
6 145 140 6.3E-44
IPR008580
ProSiteProfiles
PS51858
6 146 141 57.774 –
MobiDBLite
mobidb-lite
156 190 35 - –
MobiDBLite
mobidb-lite
156 229 74 - –
PANTHER
PTHR12378
188 270 83 6.8E-111
IPR008580
PANTHER
PTHR12378:SF16
188 270 83 6.8E-111 –
MobiDBLite
mobidb-lite
202 220 19 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0585900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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