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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0588800 |
Transcript ID | LotjaGi1g1v0588800.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Small ubiquitin-related modifier; TAIR: AT5G55160.1 small ubiquitin-like modifier 2; Swiss-Prot: sp|Q9FLP6|SUMO2_ARATH Small ubiquitin-related modifier 2; TrEMBL-Plants: tr|I3SW62|I3SW62_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0588800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:112920558..112924153) extracted from Lotus japonicus Gifu genome v1.2.
AAAATATCTTGGAAAATACCAGAACTTATGTGGCTCCATGAGAAATATCTGCAAACCCTAATTATATATTAGGCGTGAAT CAGTTAAAATATCTACATGGGGATGGAGGCATAGAGGACCAGCTTCCCGCCGGAGTTGTCATTAGATCGTAAAGAAAGAA AGAATTCAGAAGGGTGTTCTTTCAGGTGCCCATTCTAATATAAATTTTCTTCTTCTTCTTTTATTATTTTGTTAAAGAGA AATAAAAAAATTGGGTGAGTTCTGCTACCATCATGAGTCGGAACCCCCAGTGGTTGTTTGGGCATCAGTGTTTGCTGGAA GCCTTGAGCCTGATTTGTTGCAGCTATCAGAAGAGTATTATCGTTTGTTCTTCCTGTCTTGCTTTCCCTTAGACTTAGTA GGTGCAGATGGGCTGCCTCTTCTCTATCTTTAGGAAGGATTCTGTTTTCTTTCCCCTGACCCCGCCGTAATCCCAACTAT CTAGGGGAAATGACCCATCCTACTGTGCCATATTGATTGTTGGTTTTTTAATGCACCAGATAGATAAATCAATTGTTAAG AATAATCATTTTAAAGGAATAATAATTATTTCTTATTGTTAAGAATAATTTTCTTCCCTTATTCTTTCTGAATGAATATT TTTTCCTTATTTATCTTCATTAATTATATTACCTGATTTGTTACCCTTTATTTGAAACCTTTTCCGTCACCTTATATAAT GGGCACAACAAAAGACTGATTTTTTGCATTAGAAAACCACAAGCAAATTAACCTACCTCCCTCCCAGTACAATGTCAGCA GCATCAGCCTCAGGTGAAAGAGGAAGCCAAGATCAGGATCAGGAGAAGAAGCCTGCTACTAATCAGGGATCATCACACAT CAATATCAAAGTCAATGGCGTCCAGGTCTTAATTAATTCTGCATTTGTCTTCTTTGTTAAAATTTGTTTATGTTTGTGGT TCACAAAAACAACGTTTCCCATGTTTCTTCGTTTTGAGATTAGATTTTGTTTTTCTTATGTAAACTTGTTTTTTGTTGTT GTAATTGAGGCTTTAATATTCATGCTGTAGCCTTATGTTTCTTTTACATGTGTTTGAATGAATTTGCAAACCTCATGGTC CATGTGATGTGGCAAAGAATTTGGTTTTAATATAGTTTTGTCCCTTAATTGGATCCCCCAAACAAACCCAACTCACATTA GTCACTGAAAGAAATATTTTGTCGATGGTGGTCTTTAATTTTAGTTTAATCTACACCAATGTTTATACTTTTTTAAACTT TTTGTATTTTTTGATAACATGGAGGGATTAAACTTTTGGTATTTGAATCTGTATTTCATTAATTGATGCATATATAATAC ATGATAAAGAGCTAATGATAATAAGAAATTCACCACACTTGTAGATAGTTGAGATTTTTAATTATTTAGTCAAGTGTTTA ATTATTGGATAAGTCTATACAAAATCATTTGTTCAGATAGATTTACCCACTTAAACTGATCTATGAAATTAATCTAGTGG CTAGAGGTTGTGCGGATAGGTCAACGAAAAAAAAACTGAGTTTCATATAACCGACAGTAATCTAACTGATAAATCCTATG AACTGAAAAAGATTCAAATCATATAATTTGAATTTTGAATTACAGTGTGTGCTAGATTTGCCAAGTACACACAATCAACC TCTCTTCATAGAATAATTGTCACACTTCAGTGTCGCTCATAATTTCCTCTCTGTTCTGTTTTGAACAACAGAGTTAAGCT CTGCCTTCTGAAAGTAATGATTAACTCTACCCTTTTGATGAAAACATTTTCAAGTTCATTCATAGAAATATGGGGCACAT ATGGATATGAAATTCAAAGACCTTCTTTGATTTACATGGAAGGGTTATCTAAATGACTATGTTTGGGTTATTCACTATAG TCTAGACTAATGATATTTAAGTTAAGTGGGCTACAAATTTTATATTTTATTTATTTATATATAATTCAATTGATCCATTA TGCCTTCCATTCAAAATCACCATCTCCCCATAGGGAGTCACAAAGTTTGTTATCTATCATCTGAATTTTTGCTTCCTGCA GTAACATCATATCAATTTGTTCCTCTGAAGCAATGTTTCGGATTATCCTCCACTTGACCCTATTGGCCACCCCTCTTACA TTGTAGCTAAGAATCTTCATTGGCCACCCCTAGATAATCTATCAACAGCATTATTTTGGGTTGTTGTCAAGGCGTTCATG AGTCATTTAGACGACCTTATTATATAATGTTTTTACAATGGAAAAATGTTATCAACACTCTTGTCTGCCATCATAATGTT TGAATTATGCTCCTCTAATGTTAATGAACTTATTTTAGAGATAAAATAAATCATCATACCCCTAAAGGACTTGACTCTAG AGGAGTCGGGGGCAAAAACACTCTCATTTTACAATGTTATTGCCTCTTATTTTTCTGGTTTATTTAGAAACTACGACACT TCATTTACCATCTATATTTTTCTCTCCTTACAACTATTTATTTTGGGTGAAATTTTTTATAAATTACTAATATGTTTTAA GCATGTCTTTCTTGTAGGAAAAGATTGAGGCTCGGTTTAGAATAAAAAGAAACGTACAATTGCGGACACTGATGAATTTA TATTGTGATCACTACTCTCAAGATTTTAACTCAATTGCTTTCTTATATGAGGGAAATTTGGTCTCCGCTTATCAAACGCC TGATGAGGTAAATTTTCGTTTACTTTGATGCACCAATTATTTTAAAAGTTTAAGGTATTTAGTAAATAATATATGAATGA TTTTATATTATATTTCTAACATATTCCTCTGGCAAGATGATAATATATTTCTAAGAGAGAGTCCGCTTCAAGCGTCGATA ATACAAACCCCACCTACCTTCTAAGATGTAATGAATAATTAGAATAATTTGGAGCAAAGATGATCGGGCTAACAACTTAG TCATAGAACTCCTAATACAATCTTGTGAACTAATTAATGTAAAAGTTTACGAAAGTCAATAGAGCTTTTGGTAGATCGTT TACTCAAATTTTATCTTTCAATTGCTCCTGTACACTTATGGTTGTTTTTAGAGCTTATCCTTGTATTGAAGTTTCTAAAA TGACCATATCCATTTATACTTGCTCTACATTCTTTTCTACAGCAGCATATCATCCAATCTCATATATGAAATTGCTTCTT AGTCCTTATTTATTCTCTGTTGTTAATTTTGAGTAACATTGGCTTTGTGCAGCTAAAGATGGAAGACGAGGACGAGATTG ATGCAATGTCGCACCAAATGGGAGGTGGATTTTAAATGTTTGATGATTTTGATCATAGAGCTTGAGAAAACCAATGGTCT ATATTATGTAGTGCTTGTTTTAGCTATGTTTTTTACATCATATATCATAATAGTTCTAGTGTAGAGGGATGGATGGTTTA AGATATGGACTATGGAGTACTTAAGTTTCATGTTTATTGAAATCTTCTAGCTTCAAAGTTGTTTTTATGGTGTCAGATAC AATATTACAGTGGGTCCCCTGTCCAACAGAAATAAAATTTTAATAAAGTATGTAGCATTTAAATATTATATTTATC
CDS sequence (LotjaGi1g1v0588800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGCAGCATCAGCCTCAGGTGAAAGAGGAAGCCAAGATCAGGATCAGGAGAAGAAGCCTGCTACTAATCAGGGATC ATCACACATCAATATCAAAGTCAATGGCGTCCAGGAAAAGATTGAGGCTCGGTTTAGAATAAAAAGAAACGTACAATTGC GGACACTGATGAATTTATATTGTGATCACTACTCTCAAGATTTTAACTCAATTGCTTTCTTATATGAGGGAAATTTGGTC TCCGCTTATCAAACGCCTGATGAGCTAAAGATGGAAGACGAGGACGAGATTGATGCAATGTCGCACCAAATGGGAGGTGG ATTTTAA
Protein sequence (LotjaGi1g1v0588800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSAASASGERGSQDQDQEKKPATNQGSSHINIKVNGVQEKIEARFRIKRNVQLRTLMNLYCDHYSQDFNSIAFLYEGNLV SAYQTPDELKMEDEDEIDAMSHQMGGGF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 31 | 31 | - | – | |
PANTHER | 14 | 107 | 94 | 5.6E-33 | – | |
PANTHER | 14 | 107 | 94 | 5.6E-33 | – | |
Gene3D | 16 | 106 | 91 | 8.2E-27 | – | |
SUPERFAMILY | 17 | 106 | 90 | 2.43E-17 | ||
ProSiteProfiles | 28 | 106 | 79 | 9.243 | ||
CDD | 29 | 102 | 74 | 8.79907E-27 | – | |
Pfam | 30 | 100 | 71 | 4.0E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0588800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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