Transcript — View — Lotus Base

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LotjaGi1g1v0588800.2

Overview

Field	Value
Gene ID	LotjaGi1g1v0588800
Transcript ID	LotjaGi1g1v0588800.2
Related isoforms 1	LotjaGi1g1v0588800.1
Lotus japonicus genome version	Gifu v1.2
Description	Small ubiquitin-related modifier; TAIR: AT5G55160.1 small ubiquitin-like modifier 2; Swiss-Prot: sp\|Q9FLP6\|SUMO2_ARATH Small ubiquitin-related modifier 2; TrEMBL-Plants: tr\|I3SW62\|I3SW62_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0588800
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:112920616..112924148) extracted from Lotus japonicus Gifu genome v1.2.

TAATTATATATTAGGCGTGAATCAGTTAAAATATCTACATGGGGATGGAGGCATAGAGGACCAGCTTCCCGCCGGAGTTG TCATTAGATCGTAAAGAAAGAAAGAATTCAGAAGGGTGTTCTTTCAGGTGCCCATTCTAATATAAATTTTCTTCTTCTTC TTTTATTATTTTGTTAAAGAGAAATAAAAAAATTGGGTGAGTTCTGCTACCATCATGAGTCGGAACCCCCAGTGGTTGTT TGGGCATCAGTGTTTGCTGGAAGCCTTGAGCCTGATTTGTTGCAGCTATCAGAAGAGTATTATCGTTTGTTCTTCCTGTC TTGCTTTCCCTTAGACTTAGTAGGTGCAGATGGGCTGCCTCTTCTCTATCTTTAGGAAGGATTCTGTTTTCTTTCCCCTG ACCCCGCCGTAATCCCAACTATCTAGGGGAAATGACCCATCCTACTGTGCCATATTGATTGTTGGTTTTTTAATGCACCA GATAGATAAATCAATTGTTAAGAATAATCATTTTAAAGGAATAATAATTATTTCTTATTGTTAAGAATAATTTTCTTCCC TTATTCTTTCTGAATGAATATTTTTTCCTTATTTATCTTCATTAATTATATTACCTGATTTGTTACCCTTTATTTGAAAC CTTTTCCGTCACCTTATATAATGGGCACAACAAAAGACTGATTTTTTGCATTAGAAAACCACAAGCAAATTAACCTACCT CCCTCCCAGTACAATGTCAGCAGCATCAGCCTCAGGTGAAAGAGGAAGCCAAGATCAGGATCAGGAGAAGAAGCCTGCTA CTAATCAGGGATCATCACACATCAATATCAAAGTCAATGGCGTCCAGGTCTTAATTAATTCTGCATTTGTCTTCTTTGTT AAAATTTGTTTATGTTTGTGGTTCACAAAAACAACGTTTCCCATGTTTCTTCGTTTTGAGATTAGATTTTGTTTTTCTTA TGTAAACTTGTTTTTTGTTGTTGTAATTGAGGCTTTAATATTCATGCTGTAGCCTTATGTTTCTTTTACATGTGTTTGAA TGAATTTGCAAACCTCATGGTCCATGTGATGTGGCAAAGAATTTGGTTTTAATATAGTTTTGTCCCTTAATTGGATCCCC CAAACAAACCCAACTCACATTAGTCACTGAAAGAAATATTTTGTCGATGGTGGTCTTTAATTTTAGTTTAATCTACACCA ATGTTTATACTTTTTTAAACTTTTTGTATTTTTTGATAACATGGAGGGATTAAACTTTTGGTATTTGAATCTGTATTTCA TTAATTGATGCATATATAATACATGATAAAGAGCTAATGATAATAAGAAATTCACCACACTTGTAGATAGTTGAGATTTT TAATTATTTAGTCAAGTGTTTAATTATTGGATAAGTCTATACAAAATCATTTGTTCAGATAGATTTACCCACTTAAACTG ATCTATGAAATTAATCTAGTGGCTAGAGGTTGTGCGGATAGGTCAACGAAAAAAAAACTGAGTTTCATATAACCGACAGT AATCTAACTGATAAATCCTATGAACTGAAAAAGATTCAAATCATATAATTTGAATTTTGAATTACAGTGTGTGCTAGATT TGCCAAGTACACACAATCAACCTCTCTTCATAGAATAATTGTCACACTTCAGTGTCGCTCATAATTTCCTCTCTGTTCTG TTTTGAACAACAGAGTTAAGCTCTGCCTTCTGAAAGTAATGATTAACTCTACCCTTTTGATGAAAACATTTTCAAGTTCA TTCATAGAAATATGGGGCACATATGGATATGAAATTCAAAGACCTTCTTTGATTTACATGGAAGGGTTATCTAAATGACT ATGTTTGGGTTATTCACTATAGTCTAGACTAATGATATTTAAGTTAAGTGGGCTACAAATTTTATATTTTATTTATTTAT ATATAATTCAATTGATCCATTATGCCTTCCATTCAAAATCACCATCTCCCCATAGGGAGTCACAAAGTTTGTTATCTATC ATCTGAATTTTTGCTTCCTGCAGTAACATCATATCAATTTGTTCCTCTGAAGCAATGTTTCGGATTATCCTCCACTTGAC CCTATTGGCCACCCCTCTTACATTGTAGCTAAGAATCTTCATTGGCCACCCCTAGATAATCTATCAACAGCATTATTTTG GGTTGTTGTCAAGGCGTTCATGAGTCATTTAGACGACCTTATTATATAATGTTTTTACAATGGAAAAATGTTATCAACAC TCTTGTCTGCCATCATAATGTTTGAATTATGCTCCTCTAATGTTAATGAACTTATTTTAGAGATAAAATAAATCATCATA CCCCTAAAGGACTTGACTCTAGAGGAGTCGGGGGCAAAAACACTCTCATTTTACAATGTTATTGCCTCTTATTTTTCTGG TTTATTTAGAAACTACGACACTTCATTTACCATCTATATTTTTCTCTCCTTACAACTATTTATTTTGGGTGAAATTTTTT ATAAATTACTAATATGTTTTAAGCATGTCTTTCTTGTAGGAAAAGATTGAGGCTCGGTTTAGAATAAAAAGAAACGTACA ATTGCGGACACTGATGAATTTATATTGTGATCACTACTCTCAAGATTTTAACTCAATTGCTTTCTTATATGAGGGAAATT TGGTCTCCGCTTATCAAACGCCTGATGAGGTAAATTTTCGTTTACTTTGATGCACCAATTATTTTAAAAGTTTAAGGTAT TTAGTAAATAATATATGAATGATTTTATATTATATTTCTAACATATTCCTCTGGCAAGATGATAATATATTTCTAAGAGA GAGTCCGCTTCAAGCGTCGATAATACAAACCCCACCTACCTTCTAAGATGTAATGAATAATTAGAATAATTTGGAGCAAA GATGATCGGGCTAACAACTTAGTCATAGAACTCCTAATACAATCTTGTGAACTAATTAATGTAAAAGTTTACGAAAGTCA ATAGAGCTTTTGGTAGATCGTTTACTCAAATTTTATCTTTCAATTGCTCCTGTACACTTATGGTTGTTTTTAGAGCTTAT CCTTGTATTGAAGTTTCTAAAATGACCATATCCATTTATACTTGCTCTACATTCTTTTCTACAGCAGCATATCATCCAAT CTCATATATGAAATTGCTTCTTAGTCCTTATTTATTCTCTGTTGTTAATTTTGAGTAACATTGGCTTTGTGCAGCTAAAG ATGGAAGACGAGGACGAGATTGATGCAATGTCGCACCAAATGGGAGGTGGATTTTAAATGTTTGATGATTTTGATCATAG AGCTTGAGAAAACCAATGGTCTATATTATGTAGTGCTTGTTTTAGCTATGTTTTTTACATCATATATCATAATAGTTCTA GTGTAGAGGGATGGATGGTTTAAGATATGGACTATGGAGTACTTAAGTTTCATGTTTATTGAAATCTTCTAGCTTCAAAG TTGTTTTTATGGTGTCAGATACAATATTACAGTGGGTCCCCTGTCCAACAGAAATAAAATTTTAATAAAGTATGTAGCAT TTAAATATTATAT

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0588800.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCAGCAGCATCAGCCTCAGGTGAAAGAGGAAGCCAAGATCAGGATCAGGAGAAGAAGCCTGCTACTAATCAGGGATC ATCACACATCAATATCAAAGTCAATGGCGTCCAGGAAAAGATTGAGGCTCGGTTTAGAATAAAAAGAAACGTACAATTGC GGACACTGATGAATTTATATTGTGATCACTACTCTCAAGATTTTAACTCAATTGCTTTCTTATATGAGGGAAATTTGGTC TCCGCTTATCAAACGCCTGATGAGCTAAAGATGGAAGACGAGGACGAGATTGATGCAATGTCGCACCAAATGGGAGGTGG ATTTTAA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0588800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSAASASGERGSQDQDQEKKPATNQGSSHINIKVNGVQEKIEARFRIKRNVQLRTLMNLYCDHYSQDFNSIAFLYEGNLV SAYQTPDELKMEDEDEIDAMSHQMGGGF

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	31	31	-	–
PANTHER	PTHR10562 View details on PTHR10562 Search for proteins/transripts with this domain View external data on PTHR10562	14	107	94	5.6E-33	–
PANTHER	PTHR10562:SF84 View details on PTHR10562:SF84 Search for proteins/transripts with this domain View external data on PTHR10562:SF84	14	107	94	5.6E-33	–
Gene3D	G3DSA:3.10.20.90 View details on G3DSA:3.10.20.90 Search for proteins/transripts with this domain View external data on G3DSA:3.10.20.90	16	106	91	8.2E-27	–
SUPERFAMILY	SSF54236 View details on SSF54236 Search for proteins/transripts with this domain View external data on SSF54236	17	106	90	2.43E-17	IPR029071 Show description in modal box View details on IPR029071 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50053 View details on PS50053 Search for proteins/transripts with this domain View external data on PS50053	28	106	79	9.243	IPR000626 Show description in modal box View details on IPR000626 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd16116 View details on cd16116 Search for proteins/transripts with this domain View external data on cd16116	29	102	74	8.79907E-27	–
Pfam	PF11976 View details on PF11976 Search for proteins/transripts with this domain View external data on PF11976	30	100	71	4.0E-13	IPR022617 Show description in modal box View details on IPR022617 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005515 View details of GO:0005515 AmiGO InterPro QuickGO	Molecular function	Protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).	Subterm of View details of GO:0005488

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0588800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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