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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0595300 |
| Transcript ID | LotjaGi1g1v0595300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transmembrane protein, putative (Protein of unknown function, DUF538); TAIR: AT3G07470.1 transmembrane protein, putative (Protein of unknown function, DUF538); Swiss-Prot: sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610; TrEMBL-Plants: tr|I3T1S2|I3T1S2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0595300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:113492635..113495650) extracted from Lotus japonicus Gifu genome v1.2.
TTTTCTTGAAAGTAATATTTAACCATATCATAAATTTGGTGATGAGCAAATAGTAAAACAAGTCACTAGAAAACAATAAA AACAAACCCGGCCCACAACCAATCACCCATCACCACCGAATACCAATAATTGATCATTCTCTTCCTAATCCCTTCTGTAT TCAAGCTGTCACCCCTCTTCTCTCTTCCATTCACCAATCCCAAAACCCAATTCACTCATCCTCTTTTCTTCCTTCTTCAA ACTTCAAACCACCAATGTTCTACCACCATTGAACACAACCACAACCTTAAAATTCTCAAAAAACAAAATCCAAAACAGTC AATAAAAACCAAACCATGTTTCTCATAATTCAGTTTCTTCTTCCTCTCCTTCTTCTCTCAACCTCTTCTTCTTCTTCTTC TTTTGCATCTGCAAGCACCAGCTCCAATGCGACCACCATCTACGAGGTTCTCCGCAACTATGGCCTCCCCATGGGTCTCT TCCCGAAGGGCGTCAAGGACTTCGAAGTTGACGATGATGGTCGCTTCTGGGTGCACTTGGATCAAGCTTGCAACGCCAAG TTCGAGAACGAGTTGCATTACGATCGAAACGTTTCTGGGTCTTTGAGTAAAGGCATGATCGATGCTTTGACCGGATTGGA TGCTCAGGATCTTTTCCTCTGGCTCCATGTGAAGAGCATTCGCGTCGATATTCCCACTTCCGGGTTGATTTACTTTGATG TTGGTGCTGCTTCCAAGCAATTCGCCTTGACCCTTTTCGAATCTCCACCTGAATGTGTTGCGATTCAGTCACAGGATGAT GCTGATGCTGATGCTTTTCGAATTGGAGATGTCTCCGAGGTTGGGTGTTCTTTCTTCTCTAATAAGATTCATTCTGGTTT TGTTTGATTTTTGATTTGCTTGTTCTGTGTTATGCTGTTGTTCTGTGTTATACTGTAGAGTATTAACTGGAAAAAAAAAG GGTGATGGTGATGTGGGTGTCAAGGTCAATCTTAATATTTATGATTTAGTTTGGTGGATGGTCATGATCTCTTATTGAGT CCTGTTGTGTTTGGTGGTTAAGAAGATGCACATGGAGAAATGGAATGATGGGTTGTAAAGTGTTTCATTTTTTCTTAAAA TACTTTTCTTTGTTGTCATGCTATCAAGGAATTGTTAGCTTTTCACTTTTAATGAGTAGGAAGAGTTTTTCTGCTGAGTG TTTTGTTGCCATTGTGATGGAGGAAGGGCTGAGAAAGAAGACTGTTTCAGTGGCCAACTTTAGTGGTTGTGCTTTTAGTT TGGTGGATGGTCTTGTAGTTCTTAATCCCCTAACAAACATTCCCTTTTGATGATTGAGAGGTTTTGATCCCTTTTTCCCC TCTTTTTTATTGTCATGCTACCAGGGAACTACCTTTTTGACTTTTGATAAATTGGAAAAGTTTTTATGCAGAGTATGATG TCCCGGTCTTAATTGAGTTGCTGATACTTTGTTTTTTCTTAGAAAATTTCATGACTCGTTCGAATTTTGTTTAGTTTTCT GTTTGGAATGAAATGATAATTCTGGGCCATGATGAGGCTCCTTCATCAGATTTATATAGCTGCATACACAGTGGAAAACC ACTATGACGTCTAAATCATGGTGAACAACCATAAAAGCTAAGCGAAGTTGTTTTGTTCACTGTGATTTTGGCTCACTGTG GCTTTTCATCGTGTATCCAAACATGCACATAGTGCATCTTTTGCTCTTTCTGTCTAATGACTTTTGTGCTTTTTGCTCTT TCTGGACCTCAATGGTTTATGGCCTCTAGGGTATTGTAGGCTTCTTATGCTTTGATGTTCAAATTTAAGAAATTGGACTA AAGAAAATGTATTGTATTATTTAATATGCAGGTTCAATTTGGAAGGCTACGCTATCAACCTGAACAAGGAACTTCTGGAA GAGATGTTCTATAGAGCATGCAGGACAGGGTAAATGGAGATTTTCTCTAGCACAATCATCATCATGGATCGTTGAATCAG ATTCAATTCCTTCGAAGAGTATAAATTAACAGGTCCATTGACTTGGTCCTGAAGTGTTGTTTGTGTTATCTCCCCATACA GTGCAGAATTATTGTTGTAAAGGCAGCCATTGTGTCTTGTTACTTATGAAGGGAAGCAACAGAGATAAATTTCCAGAATT TGTTTGTCTTGAAAACATAGAGCTAGAATGGATCAGTCATTTTGTTGAAATGGATTCTGGTGACAAGTTCACAAAGATTT TGTTCTATGTTAAGTGTTATTGTATTATAAGAATATATTGGGGGTGTTTAGTTGAATCAAATTGATGTTGTTAGTGTAAA ATTGACTGAACCAAATGCAGTTTTGATGTGAAAATTCATGATTGGTTAAAGTGAAGCTGATCGAAATATGTTATAAGTGG TTAATACTATCTCTGAAGGATGGTTGGATTTTTAAGTAATTCTTGGAAGTGCAAATTTAACAGAAAAAAGAAAGAATAGT TTTAGCTCTGTTGTTATCTTCTTTAAGTCTTTCAGGTAGTGCAGTATTTGCCAAGCTAGTGTATTTGTGATGCTTGCTTC TCTAGATATACAGTTGCTCACATGCTGATCTTTAGAAATTGTAATTTTCCAGTAAATGTAACTTTTTTAGCTTGTAATCT GTTTGGTATTGACTATTAGTGAAGGTTTCTTGCAGACTTGACTCCCAGTGAATATGATGTAAAAGGTGGGTGGGGGGGTT CAACTTGACTGGCCATGTTCAAGATCATGATTATTTTTCTTGTTTGTTTGGGAAATACTATTTTAATTACTTGTACATAT TTGTGGTAATATTGAGAAGGGTAAAGACTAAATAATCATTTTAGTCCAGTAAAATTTCTAATATTTAGTACACAAAGTGA AGTAATTAAGACTTTGTAGTGACTATTTTGAATAACACAATGGCTGTACATCTTAAATGAATGGAGTGGCAACCTTAAAA AATTTGGGTTAAATATGCTTTGTTTCCTTGAAAAATATGAGTGAATTGATTTTGAT
CDS sequence (LotjaGi1g1v0595300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTCTCATAATTCAGTTTCTTCTTCCTCTCCTTCTTCTCTCAACCTCTTCTTCTTCTTCTTCTTTTGCATCTGCAAG CACCAGCTCCAATGCGACCACCATCTACGAGGTTCTCCGCAACTATGGCCTCCCCATGGGTCTCTTCCCGAAGGGCGTCA AGGACTTCGAAGTTGACGATGATGGTCGCTTCTGGGTGCACTTGGATCAAGCTTGCAACGCCAAGTTCGAGAACGAGTTG CATTACGATCGAAACGTTTCTGGGTCTTTGAGTAAAGGCATGATCGATGCTTTGACCGGATTGGATGCTCAGGATCTTTT CCTCTGGCTCCATGTGAAGAGCATTCGCGTCGATATTCCCACTTCCGGGTTGATTTACTTTGATGTTGGTGCTGCTTCCA AGCAATTCGCCTTGACCCTTTTCGAATCTCCACCTGAATGTGTTGCGATTCAGTCACAGGATGATGCTGATGCTGATGCT TTTCGAATTGGAGATGTCTCCGAGGTTCAATTTGGAAGGCTACGCTATCAACCTGAACAAGGAACTTCTGGAAGAGATGT TCTATAG
Protein sequence (LotjaGi1g1v0595300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFLIIQFLLPLLLLSTSSSSSSFASASTSSNATTIYEVLRNYGLPMGLFPKGVKDFEVDDDGRFWVHLDQACNAKFENEL HYDRNVSGSLSKGMIDALTGLDAQDLFLWLHVKSIRVDIPTSGLIYFDVGAASKQFALTLFESPPECVAIQSQDDADADA FRIGDVSEVQFGRLRYQPEQGTSGRDVL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 32 | 32 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 26 | 26 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| SUPERFAMILY | 7 | 150 | 144 | 3.4E-39 | ||
| PANTHER | 8 | 152 | 145 | 4.9E-64 | – | |
| PANTHER | 8 | 152 | 145 | 4.9E-64 | ||
| Gene3D | 15 | 152 | 138 | 3.5E-29 | ||
| Phobius | 15 | 32 | 18 | - | – | |
| Phobius | 33 | 188 | 156 | - | – | |
| Pfam | 35 | 142 | 108 | 3.9E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0595300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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