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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0596300 |
| Transcript ID | LotjaGi1g1v0596300.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein FAR1-RELATED SEQUENCE 5; TAIR: AT4G12850.1 Far-red impaired responsive (FAR1) family protein; Swiss-Prot: sp|Q9SZL8|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5; TrEMBL-Plants: tr|I3SMC5|I3SMC5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0596300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:113575946..113580160) extracted from Lotus japonicus Gifu genome v1.2.
TTCTAACTATCGACAAAAACGTGACGACACACACCCGCTACAGAACAGTAAGTTTTCCTTTTCTTGTTTCTTTCTGCAAA ACGCAAAACAACAAATTACTCAGATCAATCCATATAAGTGTGAGTTTTGTTCAAAAAGATTACTGTTTCCTATTGTCTTC CTGATTATATTTGTTAAAAACATAAGGTATGCTGTATGTATGTCTTATAATCTAAGAATATGAATAATGATGATGTATGA GAGATTTGTGGCTGGCTTCAGATGTTGAGGCCCACACTTGAACATAATGACTATGGGATTTGGGGATTTAGAAATTTGTG GTAAGATTAGTTTACAAGGTGCAATATGACAGATTTTGAAGGATGAGTGTTTGCCTATCCAAGCAATTTCAATGATTAAG TTGGGTTTGGTTATAGTATGATTTAGGGTGTGCAACTCTTTAGTTGTTTATAAAAAGTTCCATTGTCTTTAGTTGGGTTT GGATGAACCATTTATCTATTACTTTTATTATCTGCACAATATACTAGTAATAGTATCATATATGAATTTTACTCAATTGC TTTGAAATAATTCATTTTACTGTATCTCCCTTCGTCCTTTTTTCTTGTTGGTCTTTAAAAGCAAGCTATGAATCAAGGTT CTGTTTCTATACTCCAGCTGATAATATATTTCTCAATGGCCTGGAGAATGGACATACTTCAGTTTTAGGTTTTCCGAACT CAATAACACTGCAGACTATTTTCTTTTCTTCTCTGAACTTGTTGGATGTGTTCCGTGGATTGCATAGGGATATGCAAATT TAAAAACACTGAATTTTTATGTATCAATGACTATGACTATTTGCAAGTGTTTATCTTAATGACAAAAATGGGCAGATTGT AATGGATTTATGGTAGTGGATCTGGACAGGGGAAATGAAGCAGAACATAGCTGTCTTGAAGAGAGTACAAGTGTTGGAGT TGACGTTCAAGAGCCATATGTTGGCATGGAATTTGATTGTGAAGAAGATGCCAGGAAATTTTATGTTGAATACGCCAAAC GGGTAGGATTTGTTGTACGCATTATGCAACGTCGGCGTTCTGGAGTTGATGGGAAAACTCTTGCCCGTCGACTTGGATGT AACAAACAAGGATTCTCATCACACAACAAGGGAACATTGGGGCCAGAGAAAAAGCCAAGACCTAGTGCCCGTCAAGGTTG CAAGGCAACAGTTTTGGTGAAGTTAGAAAAATCTGGAAAATGGGTTGTTACAAGATTTGTAAAGGATCACAACCATCCTC TAATTCCTACAACCAATGGGTTTAGTACAGTGGTGAGTTTTTTATTTGTTTAAATAATTGTGACGTGTTTATTATAACTT TCCACTTGTTTAAGTAGATCTACATTGCCTCCTAGGTATAAACTTGTTGCATCCTCTCTGTAGGCGGTGATTCTTTTCAT GCACCTGCTTTGCAAGTGTCTGTGAATGTATCTGTATGCATACGACCGGTGATTTAACTGTGGTGAACTTAAATTGCTGG ATATCATCATTTTGATATGTTTTGTTAATATCTTCCATAACCTGCGACATCACATTATGCTTTTGCTAGATTGTATGATT CTGTTTATTTGGATTTTGTGTAACTCAAGTCTTGGAAAATGTTTTTGGATGTCTAGAAATATTAATGTGCATCTGAAACT AGTAAATTAGACAAAGAAGAAAAACAGCTATTGGGAGTTCTTTTTACCTAATTTCTTTTGCTCAGAAATGCTGCTGATTT TATATTTAAATAATTGGCGTGGCGTTTTGTGAAATTTTCTATTAATGTTCAACTTTAGGGAATTGCATTATGGTAGCTTG CTCTTCCAAAAGTTGATGTAGTTTATGCCATTGGAAGGGAAATTTTATTTCAATAACCATTGTTATTTTTCTAATGACCA AAATTTTCTTTTTATTTCAAATTTAAGTTGCCATGTTTCTTTCTGAGGGCTTTCAGTTGAAATCAAGCTTGAATGTCAGT TAAAGAGTAACAGATTGACCCATGTTCTATTTTTAAGGGTGCCAATGGCTCTGGCTCTAGTAAGTAGTAACATACGATTG AATTTTGTATTTTGGTGGCTGTAGAAAATTTACTAGAAAAGGAGAAAATTACACTTAGTTTCCCCACCTTAAACCCTGTG GTGCACCCTCATATTTTGTACACAAACATTTGTGGTGGACATTCAAATACTCCCGTCGTAAAGCTTTAGTTAGGTCGTAA GTCCCCCCCCCCCCTCCCTTTATGTGCTTCCACTTATGGGTGGTGAAATGTATTAATCTTAGGAATGATGTGCTTTGACA TAATGGTTTAAGCTTTTAATTTGGATTGATGCTTGACTCGGCCTCTTTGACCAACTGATTAGCAGTGTTGTTAATCACAG ATCACTGATAATAGCAGAAAGCCAACAATCCCCTATGTCAAACCCTCATCGGAAAATAGCAGATAGCGGTGAGCGAGGGA GAGCACTGCGCTATAGCGCTGTGATATCCGCTATTTGACTACACTGCTGATTAGGTGTTTGATTTAGGTTGCATTTGTTC TTGACTGTTAGCTGTTTATTTATGTGAAATCTACATGAGCAATGAGGTTGGCATTCTCGCATTCACATTTCTGCTATTCG AGTTTGTATGCTGTCACCAATTTGTTATTACTTGCTGGAGTAAAGTATTTTTTAGATGACATGCTTTTGTATTGGTTCTG CCATTCTGGCTTTTCTTCCTGTTCATGATTCAGGTTGTTGAGTGCAGCTTCATTCATCTTAAGTATCATTACCCAGGATA CTTGGTGGTGGGTCGGTGGAATATGGACGTACAACTTTTGATTAGGATTGAACATTAATACTACCTAGGCACATGATTCT TTGTAGCTGACGTTCTGATATCTTTTGCATTCTTCGGGTTTTTTTTTCTGGTACATACCTTGGATGACTTGAATAATGAT GTGTTGATGCATATATTTGCATGCTTACTTCCTCTTCACTTTTTGTGCTAGTTTTCAGGTGTTCCAAGTTAGTTTTTGTT GTTCATTTGGCACGTAAGAAATGAGTAGTTACGACTTTGCCTAGAATCTGGTTCTGAGAGATAAATGGTTGTTCCATTGG CTGTTCTCAATTAAATTTAAACTAATTAAATTAAACTGGAAGTAGCATATGGAAGTTTAGATAGTTTTATAATGATCTTT GTTCCTTTAGTTTTTATTGAGTTGAAAGATCATTTTTTCTACATGCAGTTAGTGTTTTACTCCCTCCGTTCCTGATTAAC TGTCCACTTTGAAGAAAAAATTGTGTTCCTATATATCTGTCCACTTAGAGTTTCAAGAGAGCATTAATTGATGTTTTTCC AAGAAATGCCCTTACATAAACAATAAATGAAGAAAGATAAAATACATTCTAAAGGGTGATATAGGAAAACAAATAGTATT TTTATAAAAATCAACACAATTAATTGTTTTCCTTAATTTGTGTGAACCTTCTCTTCCTGGACAGATAAATAGGAACGGAG GGAGTATATTTGTTCTTGGTCTCTGTAGAACTATTACTTGTGAGGAGGAATCATTCATGACTTTCACAATTTTTTTTTAA TATTTAGTTTTCAATTTCTATTCCAATTCTGCTAGATCTATGGATCTCTACCGATTCTGAAGATAATTTCTCCTCTACTT GTAGGGTGATAAAGATGAGAAAATTGCAGAACTTTCTATGGAGTTAGAGCGCCAAGATCAACTGTGTGCTGCCTACCGAG AAAAGCTACTCAGCTTCATAAACAAAGTTGAGGACCAAACAGAGGAACTGTCCACAAAAATTCAGCTCATTGTTGAAAAT GTTAGGAGAGCTGAGTCAGAAAGCATAAATATTCCTAGAACAGAAAGTCACGGTTCTTAACTTGAGTGTATGAATGAATA TGGTGTAACTGTATTTTGCTAGGTGAACCTCCCCTCTAGGCAGAAGCAAGAGGTTCAATGTAGCATTTTTTTTGGGCCTT GAGGGATTTTCGGTTTAACTTAAACATGTTACAAGGGCAGAGGTAACCTTGAGTATTCTGCTTGATGAATCAAGGCAAGT AACACAAAAAGAGTTCTTCAATACCCCTAACAATGAATACAGAATGATAGCGACCACAGCTAAAGTGACTAGTGAAGGCT GGGGAAGGTAACATAAGATGTCCGTGTAATTTTTATACAGATGTACAAAGTTTGA
CDS sequence (LotjaGi1g1v0596300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCTGGACAGGGGAAATGAAGCAGAACATAGCTGTCTTGAAGAGAGTACAAGTGTTGGAGTTGACGTTCAAGAGCC ATATGTTGGCATGGAATTTGATTGTGAAGAAGATGCCAGGAAATTTTATGTTGAATACGCCAAACGGGTAGGATTTGTTG TACGCATTATGCAACGTCGGCGTTCTGGAGTTGATGGGAAAACTCTTGCCCGTCGACTTGGATGTAACAAACAAGGATTC TCATCACACAACAAGGGAACATTGGGGCCAGAGAAAAAGCCAAGACCTAGTGCCCGTCAAGGTTGCAAGGCAACAGTTTT GGTGAAGTTAGAAAAATCTGGAAAATGGGTTGTTACAAGATTTGTAAAGGATCACAACCATCCTCTAATTCCTACAACCA ATGGGTTTAGTACAGTGGGTGATAAAGATGAGAAAATTGCAGAACTTTCTATGGAGTTAGAGCGCCAAGATCAACTGTGT GCTGCCTACCGAGAAAAGCTACTCAGCTTCATAAACAAAGTTGAGGACCAAACAGAGGAACTGTCCACAAAAATTCAGCT CATTGTTGAAAATGTTAGGAGAGCTGAGTCAGAAAGCATAAATATTCCTAGAACAGAAAGTCACGGTTCTTAA
Protein sequence (LotjaGi1g1v0596300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLDRGNEAEHSCLEESTSVGVDVQEPYVGMEFDCEEDARKFYVEYAKRVGFVVRIMQRRRSGVDGKTLARRLGCNKQGF SSHNKGTLGPEKKPRPSARQGCKATVLVKLEKSGKWVVTRFVKDHNHPLIPTTNGFSTVGDKDEKIAELSMELERQDQLC AAYREKLLSFINKVEDQTEELSTKIQLIVENVRRAESESINIPRTESHGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 201 | 201 | 9.1E-109 | – | |
| PANTHER | 1 | 201 | 201 | 9.1E-109 | – | |
| Pfam | 41 | 130 | 90 | 1.5E-29 | ||
| MobiDBLite | 77 | 100 | 24 | - | – | |
| Coils | 146 | 166 | 21 | - | – | |
| Coils | 171 | 198 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0596300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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