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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0596500 |
| Transcript ID | LotjaGi1g1v0596500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein interaction domain protein; TAIR: AT4G12560.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SU30|CPR30_ARATH F-box protein CPR30; TrEMBL-Plants: tr|I3T5P8|I3T5P8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0596500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:113592759..113595645) extracted from Lotus japonicus Gifu genome v1.2.
CTAATTCACAAAAGCTCAACCTTTTCTCCTTCTCAACCTGAAACCTTATTCTCCAATCAACACAAAACCTAGCCGCCACC CTCTTTCTTTCTCGTCCTGAATAACGCCACCGCCATCTTCTCTTTGCCGATCTGAAGCCTCCAACCACCAAATTGAATAT TCCTTTCCCTCACTCTTCTAACCTTTCATTCGACCACAACACTAAACTGGAAAATAAATGATGGTGATGCGATGATCGAT GCTCAAAGCCTCAGTGGTGCGGTGGTGATTTGGGGCTACAATGGTTGTGTAGATGATGGTGAGGATGTTCGATTCCAGAA CTGAGATAATCCCAAAATCAGATATCAATTGTAATTTCATTACCATGGTTCTTTCTCTTTTCCTACATTTTGTTGTGCTT TGATCCTCATGCATCTTTCTTTGTCTCACCTGGGAATGTCTCTAGTTATTGATGTATCTGTTAAATGTTGATGTTGTCTT ATGATTATGATCTTGGATATATGCAATATTCTATTTGGAACTTCACATGGTGAAGATTGTGTGGTATATGTGATTTGAGT CAATCTTTGCTTTTTAGTGTTTTTGGGACCATTTTTTTTCCAGTGGGATTGTTTCATTGAATCTTATTTAGTTTGCACGT TTGAAGAAGGAAAATAATGAAGAATCTTGATATCTAAATCAAATAGGAAGACAAACTGATGTCATTGAATAAGGGAGGTT TTGCTGCCTTGTTTCTCTCAAACACGTTATTTTTATTGGTTTTGCTTTCATTATTGATGCCTTCATTGATTGAAATTATC TAGTTGAAATTTGGTACAAATTAATTTAATTTTCTATGAATATTACTTGGATGATATCTTTAACAAAAATACAAAAACAC ATGTCGATTGTTTGCAGGTTAATTTTGTTTTCTTCCCCTAACGATGAAAAACCCTCGTGATGATCAAATTCTCCCTTTGG ATCTCCTTATGGAAATCTTGTCATGGCTACCCGTGAAGACCCTCATGCAATATGCGTGCGTTTCGAAGTCATTGAAATCA CTGATCATCGATGATCCATCATTCGCGAAACTGCACCTTAATAGATCTCCCAAAAACACGCACATTCTCCTCAACACAGA ATATGACCCCTACGAATTGGAAAATGAGGACAGTTGGGTTGTTCCATGCTCTGTGCGTTGCTTGATGGAGGATCCGTCGT CCGTGATCGATGTTGAAGGGTGCTACCATTTGAAGGGAAATCATTTGGTTATTGGCTACTGTAATGGGTTGGTTTGTTTG GGCAACTTTTGTGATGTTGGCCCAATTGAAGATTTTTGGGTTCAACTTTGGAACCCGGCCACACACCTTATGTCTAAGAA GTTACCAACCTTTCATCTAAGCATGCGAACTTCTGTGGATGCTCCGCGGGGTAAGGTGAATTTGGGGTTCGGCTATGATA GTTCACATGATACTTACAAGGTGAGTAATTTTTTTTTAATTCCTACCCTTTCAACATAATTACTTGAGAATTCATAATAG TATATGATATCTTAATTTGAAATTAACTTGTTTTTGTAGAGATATCTGAAATACAATCAATGTTTTAAATTGTTGTGGCT AAATCGATATTTCATATTCTGAAAAATTGATGATATATATGACCATATCTACAATAATTACACTGATGATGACCTTTAAA TGGTCATGGTCTTATGTTCTAAAATAGTGTCCATGGTTGAATTTCATGATGAGACGAAAAATGAGACATCATTTGAAAAC TTAAGATTTAGCCAGAAAACCTCCACATTGTAGACCAAAATTTAAAATGAAAATGCGATTTTAATTAACTTACTCAAGCA ATCAGATTTACTATCCCTAACATCAAGGAGAATTTTACAAGTTAAGTTAGTCTTTATTGTGAAAATGATGTATTTTTTGG GTCAAGTCAATCCCTACTTTAAATTACCTTAAAGTCTAATTAGATCATGAACCATGGAGATCAATTTAAAGAACAAGTTA TTCAATTTAATTTGACTAATCTAACGAAAAATAAAAGACTGCATAATTTTCATAATTCATCTCAAAAGTATGATCCTTTT GGGTTAATTTTATTTTTTACTCTTTGCTAGGTAGTGGTGGTGCATTGGGATTGTACAGAGCAGAAAATGATGACAAGGGT TTATTGCATGAAAAATATTTGCTGCAAAAATATTTTGTGTGACCCTTGTTCCCCTCTTATGCTCTACCCAATCATGGGAA AATTTGTGGGTGGTTGTGTTAACTGGATAGCTCTTAAAAATATGAATGGTCCCGAATATGAATGGGGCAATGTTACTCGC GAGCAGCTGGCTATTGTTTCTTTTGACATGAGTAAGGAAAAGTATACATATCGGCCACTTCCTGAGGGTGTTACTAAGGT GCCTTACTTTGAGCCAAGTCTCGAGGTTCTAGAAAATCACATGTATCTTTCTCATGATCATAATCTGACTCATTTTGTTA TGTGGAAAATGAGAGAGTATGGAGTTCAAGAGTCTTGAACTCGGTGGCTGAGTGTCAGTTATGAGCATCTTCGATGTGAT AGTTTGCTTACCTTGCCAATGTTCTTGTCTGAAGATGGTGACATCCTTTTGCTCGCAAATACTGAGGATTTGGAGTTTAT CAAGTATAACATAAAAGATGATAATGTAGAGTATATTCCAAATGCCAATTATGAATTTTGGTTACAGGCTTTTGGTTATG TTCAGAGTCTGGTTTCTCCTTGTTAAGACAAAGAAGATTGATAAGAACGACGGAGAAAAAGAGCTCTTGGATGCCAATTC CAAAATTCCCTAGATTTTCTTTCAATATTTGATTCGTACCTTATTGATATTATAAATTCTCTTAAATTTTATGAATCTTT AAAGTAT
CDS sequence (LotjaGi1g1v0596500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAAACCCTCGTGATGATCAAATTCTCCCTTTGGATCTCCTTATGGAAATCTTGTCATGGCTACCCGTGAAGACCCT CATGCAATATGCGTGCGTTTCGAAGTCATTGAAATCACTGATCATCGATGATCCATCATTCGCGAAACTGCACCTTAATA GATCTCCCAAAAACACGCACATTCTCCTCAACACAGAATATGACCCCTACGAATTGGAAAATGAGGACAGTTGGGTTGTT CCATGCTCTGTGCGTTGCTTGATGGAGGATCCGTCGTCCGTGATCGATGTTGAAGGGTGCTACCATTTGAAGGGAAATCA TTTGGTTATTGGCTACTGTAATGGGTTGGTTTGTTTGGGCAACTTTTGTGATGTTGGCCCAATTGAAGATTTTTGGGTTC AACTTTGGAACCCGGCCACACACCTTATGTCTAAGAAGTTACCAACCTTTCATCTAAGCATGCGAACTTCTGTGGATGCT CCGCGGGGTAAGGTGAATTTGGGGTTCGGCTATGATAGTTCACATGATACTTACAAGGTAGTGGTGGTGCATTGGGATTG TACAGAGCAGAAAATGATGACAAGGGTTTATTGCATGAAAAATATTTGCTGCAAAAATATTTTGTGTGACCCTTGTTCCC CTCTTATGCTCTACCCAATCATGGGAAAATTTGTGGGTGGTTGTGTTAACTGGATAGCTCTTAAAAATATGAATGGTCCC GAATATGAATGGGGCAATGTTACTCGCGAGCAGCTGGCTATTGTTTCTTTTGACATGAGTAAGGAAAAGTATACATATCG GCCACTTCCTGAGGGTGTTACTAAGGTGCCTTACTTTGAGCCAAGTCTCGAGGTTCTAGAAAATCACATGTATCTTTCTC ATGATCATAATCTGACTCATTTTGTTATGTGGAAAATGAGAGAGTATGGAGTTCAAGAGTCTTGA
Protein sequence (LotjaGi1g1v0596500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKNPRDDQILPLDLLMEILSWLPVKTLMQYACVSKSLKSLIIDDPSFAKLHLNRSPKNTHILLNTEYDPYELENEDSWVV PCSVRCLMEDPSSVIDVEGCYHLKGNHLVIGYCNGLVCLGNFCDVGPIEDFWVQLWNPATHLMSKKLPTFHLSMRTSVDA PRGKVNLGFGYDSSHDTYKVVVVHWDCTEQKMMTRVYCMKNICCKNILCDPCSPLMLYPIMGKFVGGCVNWIALKNMNGP EYEWGNVTREQLAIVSFDMSKEKYTYRPLPEGVTKVPYFEPSLEVLENHMYLSHDHNLTHFVMWKMREYGVQES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 4 | 50 | 47 | 10.769 | ||
| Gene3D | 7 | 85 | 79 | 1.0E-6 | – | |
| SUPERFAMILY | 9 | 64 | 56 | 1.83E-11 | ||
| SMART | 10 | 50 | 41 | 3.8E-6 | ||
| Pfam | 10 | 46 | 37 | 8.0E-8 | ||
| PANTHER | 13 | 308 | 296 | 1.3E-34 | – | |
| PANTHER | 13 | 308 | 296 | 1.3E-34 | – | |
| TIGRFAM | 111 | 310 | 200 | 1.1E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0596500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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