Transcript — View — Lotus Base

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LotjaGi1g1v0597600.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0597600
Transcript ID	LotjaGi1g1v0597600.1
Related isoforms 1	LotjaGi1g1v0597600.2
Lotus japonicus genome version	Gifu v1.2
Description	Neuroguidin; TAIR: AT1G07840.1 Sas10/Utp3/C1D family; Swiss-Prot: sp\|Q28IV8\|NGDN_XENTR Neuroguidin; TrEMBL-Plants: tr\|I1K9T1\|I1K9T1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0597600
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:113721291..113725934) extracted from Lotus japonicus Gifu genome v1.2.

CCTCTCTCTTAGCCCTAACCCACACAACCCTATTTTTAAATGTGGGTCATCAAACCCTACCAATGATGTGAGCTGAACAG AGCTAGCCCACTTTGCTTTTTTATATTTATTTATTTATATTTTTAACATTTTTTAAAATAATTCAAAATATTAATTAATT CAGACAGAAATTTGATAAAAAGATCTAAACCCTAAATTCTTCATCTGCAAAACCCCAATTTCCCCCAAATTCCTTGCCGC CATATCCCAAACTCCGCGACCTCCACCGTCACCGGTTCAACGCTCTCCGTCGCGTGTTGCACTCCTCCGGCCGCCGTGTT CCTTCTCTACGACGTCACCAGCATCAGCCACCGCACTCCTCCTGAGACGATTTGACCACCTCACTTCATTCAGGTATTTT CTTTGAAATGGGTAACAAAGGAAAGAGGGTTTTCATTGGAATTAACTTCTGGGTCAGTTTCATTCTTGGAGATTTAGTGT TTTCTGGCTTGCCCGTTTTCCAATTTTGTGTCTTTATCCTCGTTAACTCACTCTTATAGCTTAAATTGCCTTCTGTTTAT GTGTGTTTATGCACATGTGTGCAAAGAGCAGTTGTTCAGCTTAAATAAATATTGATCGAGTTCAATTATAATTGACAAGG TCATGGAAGTAAGTTATTTGGACTCCTGTAATATCAAAGTTAGTTCAAGTTCTATCTTTTTTGAAAAATCAGAATCGTTC CATCTTGTTTAATTTGCTGTTAGTGTTACAATACTGTATAATCACCTTAACAGGGAGTTTTAATTTTAATTCAGTAAGTA GTTGATTGGCCTTTATCTCTTCCGCTATCTGACCACCTGAGTTTGAGGAACACCATTTGGTTATTGCTTGTTTGTTGTGG CACTGCTTTGATTTCAATAAGAATTGTTACAATCTAACTCACCTTTAATATTTCTAAACAAAATGCAGGTTTTGAGGTTG TTGAGAACTCTCAAATTATGGCGGAGACCGTGAACCATTTAAATAACCATGATAGCAAGGAAAAGTAAGTTTTTTAATTT ATCAAATTGCTGTTTGATTAAATTTTTTCTACACACAATTGGGAGATTGAGTGGAACTTTGCAATAGTAGTTCAAGTTCA TTCAGTTTCTTTATTGCATTTGCAGAGAAGCATCTCCGCTTGCGGCATTGTTGAAAGAAATGAAGGAAGGACTTGATGTC GTAAGACATAAAATTCAATCTTTAACTGCCAAGGTAAAAACGGTCGCACTTCTTTGTTTTTTATTTCTTTTGACACATTC CTTAAGTACTTTCTTATTTTTCGATTTATCATTGAATATTATTGCTAGTTGTAATATAAAATCCGTTTGTAGTTTGTACT TCAAGTTTGGTTGTCTTTGATACTTTTTTCTACTGCTACTACTCTAGCCTTTTTGGAATACTTTGTTGTGATATTGGTTG ATATGTTTTTTATTTATTTTGATTCTTGTACATTCTTAGTTTGGTAGCTTGTATATTGCTCATATTAGGAATGGATTTAG AATATCTCTTTCTGTTCTTAGGGCAATTCTTGTATCTATAAAATCCTCGGTATACACAGATTATTAAGATAGTCAATGAC ATATACTGGTTCAAAGTTTTTTTTGGTCTCAACTTACTCATCTCACCTGATCTCCTCAATTAGATTTTCTGTCATAAGTG AATATCATTGTTTGATATACTTGTCTTAATTGCAATAACTAATTTCATTTTTAATTTGTTTCTCCATGTCTCTTATACTA GGTGAAAGAAGGTCAATATCCTACAGCAGATGGATTTAGCTATCTTGAAGCTAAAAATTTGCTGCTTTTGAACTATTGTC AATCCCTTGTTTATTATTTGTTGAGGAAGGCTAAAGGGTTTTCGATAGAAGAACATCCTGTTGTTCGAAGTATTGTAGAG ATAAGATTATATTTAGAGAAGGTTTGGTTTTATTCTATTTGTTATTCCTGAGGGTTAACAATTAATATTTACATAACGTA ATGAATGTGCATTGTTAGACATTTGACATCCTGATTTCCATTTGCAGATTCGGCCAATTGACAAAAAGCAACAATACCAA ATCCAGAAATTGATGAAAGTTGGTGAAAATGCAGCCACAAGTGATCTTCCAAGCAAAAAGGAGCCAGTTGCATCTGATAA GAGTGAGGATGTGTCAAAGTATCGCCCGAATCCTGACATGCTTGTTAGCCGAGAAGATTTAGCCCCTCAGGTGAGTGTGT GTAATAATATCAAGGGTAAATTTGTGTAAGATAGGGTGGCAATATCATGCAACAGATCTTTTTTTCTTTGCATCTCTAAC TTAACTCATTTATATTGTAGGACGGTCATGATGCGTATCGTCCAGTAAAATTTGCTCCTACTTCTATGGATCAAGATAAA ACCTCAAAGCAAGAAAGAAACGCCTTGCGAAGGGAAAAGGAAATTCTGAAAGAATCTAAGCATAGTAGTTTTATCAGGAC ATTGATGAATGATATAGAGGAAAAACCTGAAGAGGTGATATTATAGTTTATTTTGGGTGTCAAACAATAATGACTTACTG AGTTTGTGTAATGATTTGTTTTGGTTGCTAACTATACAGATAAGAGATTATGAGGGATCTAGCAAAGAAGTTGAGAGACA TATTGCCAAAATGGAGGAGCGTGCCCGGCAAGAGGAGGAGCTATTCAACCGTGTCCCTCTTACGAAACATGAGAGGAAGA GAGAGAAATACTTGAAGAAATCAAGAAATGGGTATGGGGAGTCACCTGATATTTCCATTCTTAAAAAGCATTGAATGTAT GATCACAATTTATTTATTTATTATTTCCAGTTAACATCTGTGTTTATTGTCTTGCAGGTTGGATGGTCTAACAGAAAGTT TCTTTGATGAAATCAAAACATTACCCTTCGAAGATGAAACTGGAGAGCAAGTCATGGGCTCCAGTAAAGGCAGCAACCGT AATGGGAGGCTGAAGAAGCGAAAGGCATGATATTTTAATACTTAATTGTTATTGTTATATGGAAATTATAAATTATTTTT AAAAATTCACCTATGGAATTTTGCTTTAGTTGAACTATGTTGGATGTATTTTATGCACTGTTGCATCTGCTTTGCGTATA ACAAACCTTATTATTTGCTGATCACCTTGATACTCTGATGGTCTTTTATCCATTGTGTGTAACAAGTAGTGCTGTCAATA TAGGCCAGAACCCGCGAGCCAACCCTGCCCAACCCGGCCCACCGGTGGGTTGGATCGCTAAAATTATGTCTCACCTCACC CTCACACTAACAAGCAATCCATTCAAAAATTCAGTATGCTGAAAATTTGTTTTATGCAGATTTTTAAGACTATACCTTGC TGTCTATAATCTGTATCATTGGCCCCTCATTAGAGTCTTAGATTATCTCTTGGCTAACAAAGAATCTTATTGAGATCCTT ATTTTGCAAAAGCATGTTATTTTTTTGCTTCTGTAGGGTACACATATTGATTTGGTTATCGGTCTAAACTCTAAAGATTG TTATTACGTCCTGTTCGTTACCTATTTCTAGTTATGAAGAATTTATACTTCTATGTACCAGTAATCTTAAGATTGTTTTG AGCTATGTACTATGCAAAATCATTTTGGTTTCAATGATGACCATAGTAAGAAATCCAATCCAAATGATGCCCTTTGAAAT AATTTACTGATCAACACAAATTTCTATGTATTTGAAAATTTAATTCCTTCCTTCAGCGTATACACACCCGTACTTCTTTC CTTGTCTTTGTCTGTCAACATTAACCTCAAAAGGAATTAAAACAGATTTTGCATTAAGCTGTGCCTCCTTCCTTTCAATT AAATTGACATTTTCATTTTGCAATTGAATGTGTTGATTGTACTGTTTCAGTTGAGTTTGTAACTAACAGTTTAGGCTTCC TTGCAGAGGAAACATTGAAGGACTGAACTGCTATCTTATAAACAGACCACTGCATGCTGTGGTGGGAAGTAATGCTAGAT TCAGTGCACGGGAACGCAAAAACTACTGGGTTTGTTTCGGTGTATTACTCCCTTTCTTGGTTGGTTCCCTATATCCTAGA TGCTAGGTGTGTCTAAAGAAATTGGTTCTGAAGATTTTAATGTCTTTTTATTATTACCATGTTTTTTATTACCATTGTTT ACTGTGAATCTGGAGTGGAGACTTCAGCAATGAAAAATGTTTTTTTTTGGCTATGATCAGTGTGCACCCAATTTTGTGAG ACATGTGGTATGTGGATACTTTTCATCCAGTTTTATTTATTGCGACGGAATGTAGCACATATATTACCAAGTGAAGTTTA TATCTTGCTTTTTCAATACTCTAGCCCATGGGAGGTAGACCATCAGTTGGTTCTGTATATTGTATAAAATGCCTCTCTGA AGTCTGAACACACTAGTTGGCTTGGCTGTGCTTGATGATAATCAACCCTTCAAACTGTTATGTTGTATAAACCATGCATT TTGCTACGTGTGGTTAACACAATTGTGCTCAAGACATGCACGTTACTTGTTGTGAAATATAACAGCTAATTAGGACAAAA TTGTAAAATATAACTATAAGGTTCAAGTTTTCTCAACTCAGTTTATGCCAACCGAAGTTTGCAAAACCATGCTTAGTTAT AAGT

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0597600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGGAGACCGTGAACCATTTAAATAACCATGATAGCAAGGAAAAAGAAGCATCTCCGCTTGCGGCATTGTTGAAAGA AATGAAGGAAGGACTTGATGTCGTAAGACATAAAATTCAATCTTTAACTGCCAAGGTGAAAGAAGGTCAATATCCTACAG CAGATGGATTTAGCTATCTTGAAGCTAAAAATTTGCTGCTTTTGAACTATTGTCAATCCCTTGTTTATTATTTGTTGAGG AAGGCTAAAGGGTTTTCGATAGAAGAACATCCTGTTGTTCGAAGTATTGTAGAGATAAGATTATATTTAGAGAAGATTCG GCCAATTGACAAAAAGCAACAATACCAAATCCAGAAATTGATGAAAGTTGGTGAAAATGCAGCCACAAGTGATCTTCCAA GCAAAAAGGAGCCAGTTGCATCTGATAAGAGTGAGGATGTGTCAAAGTATCGCCCGAATCCTGACATGCTTGTTAGCCGA GAAGATTTAGCCCCTCAGGACGGTCATGATGCGTATCGTCCAGTAAAATTTGCTCCTACTTCTATGGATCAAGATAAAAC CTCAAAGCAAGAAAGAAACGCCTTGCGAAGGGAAAAGGAAATTCTGAAAGAATCTAAGCATAGTAGTTTTATCAGGACAT TGATGAATGATATAGAGGAAAAACCTGAAGAGATAAGAGATTATGAGGGATCTAGCAAAGAAGTTGAGAGACATATTGCC AAAATGGAGGAGCGTGCCCGGCAAGAGGAGGAGCTATTCAACCGTGTCCCTCTTACGAAACATGAGAGGAAGAGAGAGAA ATACTTGAAGAAATCAAGAAATGGGTTGGATGGTCTAACAGAAAGTTTCTTTGATGAAATCAAAACATTACCCTTCGAAG ATGAAACTGGAGAGCAAGTCATGGGCTCCAGTAAAGGCAGCAACCGTAATGGGAGGCTGAAGAAGCGAAAGGCATGA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0597600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAETVNHLNNHDSKEKEASPLAALLKEMKEGLDVVRHKIQSLTAKVKEGQYPTADGFSYLEAKNLLLLNYCQSLVYYLLR KAKGFSIEEHPVVRSIVEIRLYLEKIRPIDKKQQYQIQKLMKVGENAATSDLPSKKEPVASDKSEDVSKYRPNPDMLVSR EDLAPQDGHDAYRPVKFAPTSMDQDKTSKQERNALRREKEILKESKHSSFIRTLMNDIEEKPEEIRDYEGSSKEVERHIA KMEERARQEEELFNRVPLTKHERKREKYLKKSRNGLDGLTESFFDEIKTLPFEDETGEQVMGSSKGSNRNGRLKKRKA

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR13237 View details on PTHR13237 Search for proteins/transripts with this domain View external data on PTHR13237	16	316	301	1.8E-93	–
PANTHER	PTHR13237:SF7 View details on PTHR13237:SF7 Search for proteins/transripts with this domain View external data on PTHR13237:SF7	16	316	301	1.8E-93	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	25	45	21	-	–
Pfam	PF04000 View details on PF04000 Search for proteins/transripts with this domain View external data on PF04000	25	105	81	6.1E-18	IPR007146 Show description in modal box View details on IPR007146 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	128	161	34	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	136	150	15	-	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	225	252	28	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	294	318	25	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0597600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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