Domain Predictions — View

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PF04000

Source: Pfam

Description

Sas10/Utp3/C1D family

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 7

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v1812240.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Nuclear nucleic acid-binding protein C1D [Medicago truncatula] gi\|357466007\|ref\|XP_003603288.1\|	Domains IPR007146 IPR011082 PF04000 PTHR15341 PTHR15341:SF3 mobidb-lite	6
Lj1g3v3608400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: neuroguidin-like [Glycine max] gi\|356510136\|ref\|XP_003523796.1\|	Domains Coil IPR007146 PF04000 PTHR13237 mobidb-lite	5
Lj1g3v3964490.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: something about silencing protein 10-like isoform X3 [Cicer arietinum] gi\|502142960\|ref\|XP_004505165.1\|	Domains IPR007146 IPR018972 PF04000 PF09368 PTHR13237 PTHR13237:SF8 mobidb-lite	7
LotjaGi1g1v0376600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Nuclear nucleic acid-binding protein C1D; TAIR: AT5G25080.1 Sas10/Utp3/C1D family; Swiss-Prot: sp\|Q3KPR1\|C1D_XENLA Nuclear nucleic acid-binding protein C1D; TrEMBL-Plants: tr\|I1K8L9\|I1K8L9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0376600	Domains IPR007146 IPR011082 PF04000 PTHR15341 PTHR15341:SF3 mobidb-lite	6
LotjaGi1g1v0597600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Neuroguidin; TAIR: AT1G07840.1 Sas10/Utp3/C1D family; Swiss-Prot: sp\|Q28IV8\|NGDN_XENTR Neuroguidin; TrEMBL-Plants: tr\|I1K9T1\|I1K9T1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0597600	Domains Coil IPR007146 PF04000 PTHR13237 PTHR13237:SF7 mobidb-lite	6
LotjaGi1g1v0597600.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Neuroguidin; TAIR: AT1G07840.1 Sas10/Utp3/C1D family; Swiss-Prot: sp\|Q28IV8\|NGDN_XENTR Neuroguidin; TrEMBL-Plants: tr\|I1K9T1\|I1K9T1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0597600	Domains Coil IPR007146 PF04000 PTHR13237 PTHR13237:SF7 mobidb-lite	6
LotjaGi1g1v0640600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Something about silencing protein 10; TAIR: AT2G43650.1 Sas10/U3 ribonucleoprotein (Utp) family protein; Swiss-Prot: sp\|Q12136\|SAS10_YEAST Something about silencing protein 10; TrEMBL-Plants: tr\|A0A151S4Q1\|A0A151S4Q1_CAJCA Something about silencing protein 10; Found in the gene: LotjaGi1g1v0640600	Domains IPR007146 IPR018972 PF04000 PF09368 PTHR13237 PTHR13237:SF8 mobidb-lite	7

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	14.29