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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0597600 |
| Transcript ID | LotjaGi1g1v0597600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Neuroguidin; TAIR: AT1G07840.1 Sas10/Utp3/C1D family; Swiss-Prot: sp|Q28IV8|NGDN_XENTR Neuroguidin; TrEMBL-Plants: tr|I1K9T1|I1K9T1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0597600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:113721376..113725736) extracted from Lotus japonicus Gifu genome v1.2.
GCCCACTTTGCTTTTTTATATTTATTTATTTATATTTTTAACATTTTTTAAAATAATTCAAAATATTAATTAATTCAGAC AGAAATTTGATAAAAAGATCTAAACCCTAAATTCTTCATCTGCAAAACCCCAATTTCCCCCAAATTCCTTGCCGCCATAT CCCAAACTCCGCGACCTCCACCGTCACCGGTTCAACGCTCTCCGTCGCGTGTTGCACTCCTCCGGCCGCCGTGTTCCTTC TCTACGACGTCACCAGCATCAGCCACCGCACTCCTCCTGAGACGATTTGACCACCTCACTTCATTCAGGTATTTTCTTTG AAATGGGTAACAAAGGAAAGAGGGTTTTCATTGGAATTAACTTCTGGGTCAGTTTCATTCTTGGAGATTTAGTGTTTTCT GGCTTGCCCGTTTTCCAATTTTGTGTCTTTATCCTCGTTAACTCACTCTTATAGCTTAAATTGCCTTCTGTTTATGTGTG TTTATGCACATGTGTGCAAAGAGCAGTTGTTCAGCTTAAATAAATATTGATCGAGTTCAATTATAATTGACAAGGTCATG GAAGTAAGTTATTTGGACTCCTGTAATATCAAAGTTAGTTCAAGTTCTATCTTTTTTGAAAAATCAGAATCGTTCCATCT TGTTTAATTTGCTGTTAGTGTTACAATACTGTATAATCACCTTAACAGGGAGTTTTAATTTTAATTCAGTAAGTAGTTGA TTGGCCTTTATCTCTTCCGCTATCTGACCACCTGAGTTTGAGGAACACCATTTGGTTATTGCTTGTTTGTTGTGGCACTG CTTTGATTTCAATAAGAATTGTTACAATCTAACTCACCTTTAATATTTCTAAACAAAATGCAGGTTTTGAGGTTGTTGAG AACTCTCAAATTATGGCGGAGACCGTGAACCATTTAAATAACCATGATAGCAAGGAAAAGTAAGTTTTTTAATTTATCAA ATTGCTGTTTGATTAAATTTTTTCTACACACAATTGGGAGATTGAGTGGAACTTTGCAATAGTAGTTCAAGTTCATTCAG TTTCTTTATTGCATTTGCAGAGAAGCATCTCCGCTTGCGGCATTGTTGAAAGAAATGAAGGAAGGACTTGATGTCGTAAG ACATAAAATTCAATCTTTAACTGCCAAGGTAAAAACGGTCGCACTTCTTTGTTTTTTATTTCTTTTGACACATTCCTTAA GTACTTTCTTATTTTTCGATTTATCATTGAATATTATTGCTAGTTGTAATATAAAATCCGTTTGTAGTTTGTACTTCAAG TTTGGTTGTCTTTGATACTTTTTTCTACTGCTACTACTCTAGCCTTTTTGGAATACTTTGTTGTGATATTGGTTGATATG TTTTTTATTTATTTTGATTCTTGTACATTCTTAGTTTGGTAGCTTGTATATTGCTCATATTAGGAATGGATTTAGAATAT CTCTTTCTGTTCTTAGGGCAATTCTTGTATCTATAAAATCCTCGGTATACACAGATTATTAAGATAGTCAATGACATATA CTGGTTCAAAGTTTTTTTTGGTCTCAACTTACTCATCTCACCTGATCTCCTCAATTAGATTTTCTGTCATAAGTGAATAT CATTGTTTGATATACTTGTCTTAATTGCAATAACTAATTTCATTTTTAATTTGTTTCTCCATGTCTCTTATACTAGGTGA AAGAAGGTCAATATCCTACAGCAGATGGATTTAGCTATCTTGAAGCTAAAAATTTGCTGCTTTTGAACTATTGTCAATCC CTTGTTTATTATTTGTTGAGGAAGGCTAAAGGGTTTTCGATAGAAGAACATCCTGTTGTTCGAAGTATTGTAGAGATAAG ATTATATTTAGAGAAGGTTTGGTTTTATTCTATTTGTTATTCCTGAGGGTTAACAATTAATATTTACATAACGTAATGAA TGTGCATTGTTAGACATTTGACATCCTGATTTCCATTTGCAGATTCGGCCAATTGACAAAAAGCAACAATACCAAATCCA GAAATTGATGAAAGTTGGTGAAAATGCAGCCACAAGTGATCTTCCAAGCAAAAAGGAGCCAGTTGCATCTGATAAGAGTG AGGATGTGTCAAAGTATCGCCCGAATCCTGACATGCTTGTTAGCCGAGAAGATTTAGCCCCTCAGGTGAGTGTGTGTAAT AATATCAAGGGTAAATTTGTGTAAGATAGGGTGGCAATATCATGCAACAGATCTTTTTTTCTTTGCATCTCTAACTTAAC TCATTTATATTGTAGGACGGTCATGATGCGTATCGTCCAGTAAAATTTGCTCCTACTTCTATGGATCAAGATAAAACCTC AAAGCAAGAAAGAAACGCCTTGCGAAGGGAAAAGGAAATTCTGAAAGAATCTAAGCATAGTAGTTTTATCAGGACATTGA TGAATGATATAGAGGAAAAACCTGAAGAGGTGATATTATAGTTTATTTTGGGTGTCAAACAATAATGACTTACTGAGTTT GTGTAATGATTTGTTTTGGTTGCTAACTATACAGATAAGAGATTATGAGGGATCTAGCAAAGAAGTTGAGAGACATATTG CCAAAATGGAGGAGCGTGCCCGGCAAGAGGAGGAGCTATTCAACCGTGTCCCTCTTACGAAACATGAGAGGAAGAGAGAG AAATACTTGAAGAAATCAAGAAATGGGTATGGGGAGTCACCTGATATTTCCATTCTTAAAAAGCATTGAATGTATGATCA CAATTTATTTATTTATTATTTCCAGTTAACATCTGTGTTTATTGTCTTGCAGGTTGGATGGTCTAACAGAAAGTTTCTTT GATGAAATCAAAACATTACCCTTCGAAGATGAAACTGGAGAGCAAGTCATGGGCTCCAGTAAAGGCAGCAACCGTAATGG GAGGCTGAAGAAGCGAAAGGCATGATATTTTAATACTTAATTGTTATTGTTATATGGAAATTATAAATTATTTTTAAAAA TTCACCTATGGAATTTTGCTTTAGTTGAACTATGTTGGATGTATTTTATGCACTGTTGCATCTGCTTTGCGTATAACAAA CCTTATTATTTGCTGATCACCTTGATACTCTGATGGTCTTTTATCCATTGTGTGTAACAAGTAGTGCTGTCAATATAGGC CAGAACCCGCGAGCCAACCCTGCCCAACCCGGCCCACCGGTGGGTTGGATCGCTAAAATTATGTCTCACCTCACCCTCAC ACTAACAAGCAATCCATTCAAAAATTCAGTATGCTGAAAATTTGTTTTATGCAGATTTTTAAGACTATACCTTGCTGTCT ATAATCTGTATCATTGGCCCCTCATTAGAGTCTTAGATTATCTCTTGGCTAACAAAGAATCTTATTGAGATCCTTATTTT GCAAAAGCATGTTATTTTTTTGCTTCTGTAGGGTACACATATTGATTTGGTTATCGGTCTAAACTCTAAAGATTGTTATT ACGTCCTGTTCGTTACCTATTTCTAGTTATGAAGAATTTATACTTCTATGTACCAGTAATCTTAAGATTGTTTTGAGCTA TGTACTATGCAAAATCATTTTGGTTTCAATGATGACCATAGTAAGAAATCCAATCCAAATGATGCCCTTTGAAATAATTT ACTGATCAACACAAATTTCTATGTATTTGAAAATTTAATTCCTTCCTTCAGCGTATACACACCCGTACTTCTTTCCTTGT CTTTGTCTGTCAACATTAACCTCAAAAGGAATTAAAACAGATTTTGCATTAAGCTGTGCCTCCTTCCTTTCAATTAAATT GACATTTTCATTTTGCAATTGAATGTGTTGATTGTACTGTTTCAGTTGAGTTTGTAACTAACAGTTTAGGCTTCCTTGCA GAGGAAACATTGAAGGACTGAACTGCTATCTTATAAACAGACCACTGCATGCTGTGGTGGGAAGTAATGCTAGATTCAGT GCACGGGAACGCAAAAACTACTGGGTTTGTTTCGGTGTATTACTCCCTTTCTTGGTTGGTTCCCTATATCCTAGATGCTA GGTGTGTCTAAAGAAATTGGTTCTGAAGATTTTAATGTCTTTTTATTATTACCATGTTTTTTATTACCATTGTTTACTGT GAATCTGGAGTGGAGACTTCAGCAATGAAAAATGTTTTTTTTTGGCTATGATCAGTGTGCACCCAATTTTGTGAGACATG TGGTATGTGGATACTTTTCATCCAGTTTTATTTATTGCGACGGAATGTAGCACATATATTACCAAGTGAAGTTTATATCT TGCTTTTTCAATACTCTAGCCCATGGGAGGTAGACCATCAGTTGGTTCTGTATATTGTATAAAATGCCTCTCTGAAGTCT GAACACACTAGTTGGCTTGGCTGTGCTTGATGATAATCAAC
CDS sequence (LotjaGi1g1v0597600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAGACCGTGAACCATTTAAATAACCATGATAGCAAGGAAAAAGAAGCATCTCCGCTTGCGGCATTGTTGAAAGA AATGAAGGAAGGACTTGATGTCGTAAGACATAAAATTCAATCTTTAACTGCCAAGGTGAAAGAAGGTCAATATCCTACAG CAGATGGATTTAGCTATCTTGAAGCTAAAAATTTGCTGCTTTTGAACTATTGTCAATCCCTTGTTTATTATTTGTTGAGG AAGGCTAAAGGGTTTTCGATAGAAGAACATCCTGTTGTTCGAAGTATTGTAGAGATAAGATTATATTTAGAGAAGATTCG GCCAATTGACAAAAAGCAACAATACCAAATCCAGAAATTGATGAAAGTTGGTGAAAATGCAGCCACAAGTGATCTTCCAA GCAAAAAGGAGCCAGTTGCATCTGATAAGAGTGAGGATGTGTCAAAGTATCGCCCGAATCCTGACATGCTTGTTAGCCGA GAAGATTTAGCCCCTCAGGACGGTCATGATGCGTATCGTCCAGTAAAATTTGCTCCTACTTCTATGGATCAAGATAAAAC CTCAAAGCAAGAAAGAAACGCCTTGCGAAGGGAAAAGGAAATTCTGAAAGAATCTAAGCATAGTAGTTTTATCAGGACAT TGATGAATGATATAGAGGAAAAACCTGAAGAGATAAGAGATTATGAGGGATCTAGCAAAGAAGTTGAGAGACATATTGCC AAAATGGAGGAGCGTGCCCGGCAAGAGGAGGAGCTATTCAACCGTGTCCCTCTTACGAAACATGAGAGGAAGAGAGAGAA ATACTTGAAGAAATCAAGAAATGGGTTGGATGGTCTAACAGAAAGTTTCTTTGATGAAATCAAAACATTACCCTTCGAAG ATGAAACTGGAGAGCAAGTCATGGGCTCCAGTAAAGGCAGCAACCGTAATGGGAGGCTGAAGAAGCGAAAGAGGAAACAT TGA
Protein sequence (LotjaGi1g1v0597600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAETVNHLNNHDSKEKEASPLAALLKEMKEGLDVVRHKIQSLTAKVKEGQYPTADGFSYLEAKNLLLLNYCQSLVYYLLR KAKGFSIEEHPVVRSIVEIRLYLEKIRPIDKKQQYQIQKLMKVGENAATSDLPSKKEPVASDKSEDVSKYRPNPDMLVSR EDLAPQDGHDAYRPVKFAPTSMDQDKTSKQERNALRREKEILKESKHSSFIRTLMNDIEEKPEEIRDYEGSSKEVERHIA KMEERARQEEELFNRVPLTKHERKREKYLKKSRNGLDGLTESFFDEIKTLPFEDETGEQVMGSSKGSNRNGRLKKRKRKH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 16 | 317 | 302 | 1.4E-93 | – | |
| PANTHER | 16 | 317 | 302 | 1.4E-93 | – | |
| Coils | 25 | 45 | 21 | - | – | |
| Pfam | 25 | 105 | 81 | 6.2E-18 | ||
| MobiDBLite | 128 | 161 | 34 | - | – | |
| MobiDBLite | 136 | 150 | 15 | - | – | |
| Coils | 225 | 252 | 28 | - | – | |
| MobiDBLite | 294 | 320 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0597600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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