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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0600200 |
| Transcript ID | LotjaGi1g1v0600200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cell number regulator 6; TAIR: AT2G45010.1 PLAC8 family protein; Swiss-Prot: sp|B6SGC5|CNR6_MAIZE Cell number regulator 6; TrEMBL-Plants: tr|A0A1J7FNL2|A0A1J7FNL2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0600200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:114460302..114464319) extracted from Lotus japonicus Gifu genome v1.2.
GTATGACAAACAGAGATAGAGAGAGAAGTGAAACCCATGCAAGAGAGAGATTTGGTTTCTTTTACAACATTCGATCAAAT CATCAAATCGTACTTTGTCTCCAAAATCTGAACACATTCAAATTTGGATAATCTCCTCGTATCGTTTCAGGTTTCTCAAA TTGCATCTTCATCAAATCATATATTCTTATCTTATCTTGTTCTTTATTTATTCTAGCATTCACGTTCTCTCTTTGTAATA ACATATATTTGTGTTTTATTATCAAGGGGCAACAACATGGCAGACAGAAACTCAAGGTATGTAAAATTGACGAGAGATAG AGAACAAGCGCCATTGGAGGATATTACTCCTGGAGAGCTGAACCAACCAATTGAAGTTACACAAGTAATAATTTTACCAC TTTAATTTATTTTATTTTATGTTTTTTCTAAGTGGTTTTTATTTTATGTTTCTTGCTCTTGAAATTTATGCATTTTGTAG AGAAACTTAAATTTGTTTCTGTAGACTATTAAAAATAGATTTTCCACATGAGATTTTGATTTTTTATATGATTTTGTATA TCTACATCCTCTTTCATTCATTTACAAAAGTTTGATACATTTCAAATTTTCTGTCTTTTGTTGTTCGATCTAATTACTTA TTTACGTAAAAGGTAGAAGGAGGAAAAAAACTAAGATAGTTTCAAAATGCATGTACTTGTTCTGTCAAATTTGAAAACAA TGAAGCTAAAGTGGGAAATTTTCAATTTATAGTTAGAGTTTATAATAGAAATAGAACAACATTCTCAAGGGTTCATTTAG TTTTTTTGCTAGAGTAGAATTTATTGAAAATAAAGAAAGTATGGGAGAACCCTCTCATAAAGAAATTACAAATATTCACA CACTACCCAGATGACATCCACACCCTTGATTTGCTAGATAGTCTGCAAATTCATTACCTCAAATCGAAACATGAACTACC CCCACACAATTTACTAGAGGCATCAAATAATCAATGTGGTTAAAACTCTTGCATAAGTTTCCAATGACGATTAGCAATGT TCAGAGTCCAATTTATGATTACATTCTGAAAGTTGAACTGATGGAAAAACAATAAAGTATGCAAGATAGCTTGCATTTTC GCCTCATATGCCCAAAGAAAGCCCACCCCTTTTGCAAAATATCCAAGAACATGTCCAGCACAATTCCTCGAAACACCATC AATACCACTTACACCCAGATTCTCTTTTGGCGCCCCATCAAAATTAAACTTCAACAAAGCACCTCAAGGGTTCATAGAAA TAATTATCTAGGATAATAGTCTACATAAACGAAATTATGAACTTGTCATTTTAGAAATTTAATCAATTTAACTTATTCAT GATATAGTTATCAAGTTAGCTGTTATGGACAGCTTGATTGTTTATGTGTGATATATTTACTAGAAGATATTATAATCTAT ATTATTTGTAATTTAATATACATTATATTTTTATAGTTAAATTGTCGTAGATGTAATGAGTGTGGTCAAGTTTTACCTGA AACGTACCAACCACCTGCTGATGAAGATTGGGCAACTGGAATATGTGGTTGTGCAGAAGATACAGATAGTTGTAAGATTC CTTTTACCTTTTCATGATCAAATCCAAATGCGTGTTTATGGAAATTCAGATTCATATGAAGTATTAATTGTGCAAAGTTT TTTGAAGAAATGAAGGAAAAACATGGACATGCTTGGATGCATAGCATAAATAATATTTTATTTAAGATCTATTAAATAGA GTACAATATGTTATAGAATGTCTTAACAAAATGAAAACAACGTGGCATCTATTTTTCGTATTATAAGAACAATGATTTTA TATAAAATTAATCAAAATCTGAAGATAGTAGAGGCAATTTCACTATGAACTTTGTTTTTATTATTATTTTGGTGTATCAC AAGTTTTTGATAGTTTGTGCCTATAGTCATTATTGTAATGTAAGAATTGCTCCAAATGGCTTTATTTTTGTTCTGATGCT TTAATTTTCAAATATTAGTAACTTGGTCTTAACATTTGTATTTTAATAACACATTTATACAAACAAGTACAAATAAGAGA GGTTGGTAGTACATGTTATTAGTATTATATGAGGAAGCCCAAGCAAGTTTATCGAGACACTAAAAATGAGTGACTTAGAC ACTTGTAAATGTAAATCAACTCATATTATGATTAATGTATCCTTTGAGCCTCATGTATACTAATTTAGCTTCTTTCTCAT TTTAAGTAAAGTCAAACGTTACATTGGCTTGAAGACTATTATCATTGTTCTCTTATTTATATTGGATATATGGGGAGGGT GACCTTAATGGAATCAAGAAAGCATAATTAATGTAGTAGAAATTAATTGTCATGACTTGAGGCTCAAATTTGCTATTTTA TCTTGCTGAAACTCTTATGTTTCAAGTTCTCAGATTAGTTTCTTTTACACTCATATATACCTCTACAATAATGATGTTTA TGTTTAGGTTGGACTGGACTCTTTTGTCCATGTGTTTTGTTTGGCCGTAACCTTGAAGCAATGAGAGATGATATTCCTTG GACAAATGCATGTGTTTGTCATGCTATGTGTGTGGAAGGTGGAATGGCACTTGCTGCAGTAACAGCACTTTTCAATGGAA TTGATCCAGAGACATCATTTCTCATTGTTGAAGGTCTCTTTTTCACTTGGTGGATGTGTGGTATCTATACTGGTCTGTTT CGACAAGCTTTGCAGAAGAAATACCATCTTAAGGTGATTTTGTTTCTCATAGTAATAGTTTGATTTCATTTCATTTATTA TAAGAGAAATGATTGATTTGTTTTCAAGAGTGCTGCTTCTTGGAATGAGTGCATATATAATATAATTATTTTATTTTTAC AATTCTTAAAGAGTTCTAAGTAATTGAGATAGTTAACCTTTCATTAACATTACTATATTTACTTTGGAAGTATTCGTAAG TAGCTTTGATGTTGTGTATTCAACTTTGACACAATAATATTTTCTCCGATGGGATGAGTGGAGATATCTTTGGATCAAGT TCTTTTTTATAAATCTATGGCCTGATATCATTTTTAAAACTATAATGATTGTCTCTAAGGGATGATTTTATTGGGGGAAT ACCTTGAGATTTTTATAGATATTTGAGAAGAATCTCAACATAATTAGAAGACACCTTATACTTCGAATGTTGTCTCCCCC TTGCAATTAAATCATAACATCACATCATGCATCATAGTCAGTCTCATTCGCTCGAATACTAATTGATAGTAAGATTTGGG AATATCATACTATAAGAGTTAATAATTTTAGTTGGACAAGCAAAAGACATACTTTTTCAGTGTTGTCAGAATAGGACCTT TTGGTGGTTTAAAGGGCAAACCCTTCGAACTTTGACAAAGCAAAGGGAGATGGATCCAGCAGCAACTGCTGAAAGACTTT CCCAAATAAATCAAGAAATCCAAGACTTTTTAAATCCGACATGAGAATCACATAATTCTAATGTGAATCTCAAGTTTCAT ACTTTGTAATTCAATCTAAACAGTCCCACGCCTATGAGTTATAATATTAGGTGCAGTTTTATAGGACTTGTTGGTTGGAT TAGCATGTTATTTTTAAAAATTCATTGCATTTCTTTTTCAGGATTCACCATGTGATCCTTGCATGGTGCATTGTTGCTTG CATTGGTGTGCCATATGTCAAGAGCATCGAGAAATGAAGAACCATCTATCTGAAAATTCTAGCACTGAAGGAACCATTAT CAGTCCCCCACCCGTTCAAGAGATGAATACAAATAAGGAACCCGCACCTTCTACAAAATCTCCACCAAGTGATGAACATA ACAATTTGAAGATACAACCTATATAAGAATTTTCGTATATTAGAATCCAAGAGCAAACTACTGTTAATTTTTTTTGTATA ATTGTTAATTGTTCATGTTTATTAACAATAATATTAAATAATGGTCATCAATTACTATATATTTAAATAAATAGGGTACC ATAATTTATTTGAAAAAA
CDS sequence (LotjaGi1g1v0600200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGACAGAAACTCAAGGTATGTAAAATTGACGAGAGATAGAGAACAAGCGCCATTGGAGGATATTACTCCTGGAGA GCTGAACCAACCAATTGAAGTTACACAATTAAATTGTCGTAGATGTAATGAGTGTGGTCAAGTTTTACCTGAAACGTACC AACCACCTGCTGATGAAGATTGGGCAACTGGAATATGTGGTTGTGCAGAAGATACAGATAGTTGTTGGACTGGACTCTTT TGTCCATGTGTTTTGTTTGGCCGTAACCTTGAAGCAATGAGAGATGATATTCCTTGGACAAATGCATGTGTTTGTCATGC TATGTGTGTGGAAGGTGGAATGGCACTTGCTGCAGTAACAGCACTTTTCAATGGAATTGATCCAGAGACATCATTTCTCA TTGTTGAAGGTCTCTTTTTCACTTGGTGGATGTGTGGTATCTATACTGGTCTGTTTCGACAAGCTTTGCAGAAGAAATAC CATCTTAAGGATTCACCATGTGATCCTTGCATGGTGCATTGTTGCTTGCATTGGTGTGCCATATGTCAAGAGCATCGAGA AATGAAGAACCATCTATCTGAAAATTCTAGCACTGAAGGAACCATTATCAGTCCCCCACCCGTTCAAGAGATGAATACAA ATAAGGAACCCGCACCTTCTACAAAATCTCCACCAAGTGATGAACATAACAATTTGAAGATACAACCTATATAA
Protein sequence (LotjaGi1g1v0600200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADRNSRYVKLTRDREQAPLEDITPGELNQPIEVTQLNCRRCNECGQVLPETYQPPADEDWATGICGCAEDTDSCWTGLF CPCVLFGRNLEAMRDDIPWTNACVCHAMCVEGGMALAAVTALFNGIDPETSFLIVEGLFFTWWMCGIYTGLFRQALQKKY HLKDSPCDPCMVHCCLHWCAICQEHREMKNHLSENSSTEGTIISPPPVQEMNTNKEPAPSTKSPPSDEHNNLKIQPI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 102 | 102 | - | – | |
| PANTHER | 4 | 221 | 218 | 5.8E-119 | ||
| PANTHER | 4 | 221 | 218 | 5.8E-119 | – | |
| TIGRFAM | 60 | 190 | 131 | 6.1E-34 | ||
| Pfam | 61 | 187 | 127 | 7.6E-23 | ||
| Phobius | 103 | 126 | 24 | - | – | |
| TMHMM | 104 | 126 | 23 | - | – | |
| Phobius | 127 | 131 | 5 | - | – | |
| TMHMM | 130 | 152 | 23 | - | – | |
| Phobius | 132 | 152 | 21 | - | – | |
| Phobius | 153 | 237 | 85 | - | – | |
| MobiDBLite | 193 | 237 | 45 | - | – | |
| MobiDBLite | 194 | 237 | 44 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0600200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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