Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0600500 |
| Transcript ID | LotjaGi1g1v0600500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein interaction domain protein; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|A0A072UK88|A0A072UK88_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi1g1v0600500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:114515569..114517490) extracted from Lotus japonicus Gifu genome v1.2.
TGTTAGGTCTATTTTCTTCAGAAAATCATGAATAATCCCCATGTTGTTCCCATTCTCCCTTCGGAACTCGTGGAGGAAAT CATTTCACGGCTTCCCGTGAAAACCCTAATGCAACTCATATCCGTTTCCAAGTCATGGAAATCACTCATCATCGATGATC CAAAATTCGCGAAATTGCACCTCAAGAATTCGCCCAAAAAGACGCACTTCATCATCAATTTTGAAGATGAGATCGATTAC ATTGACGTGGATACTTGTTTCATTTCGTGCTCCGTGCAGCGTTTTCTAAAGGAGCCTTCATCCACAGTCGACGAAGGCAA GTGCTACCGTTTGAAGGGAACAAATTCAGTTGTTGGCTCCTGCAACGGCTTGGTTTGTTTGGGAAACTTTTATGATGTTG CCCTAATTAAAGAATTTTGGGTCCAGCTCTGGAACCCTGTTATGCGCTTGAGTTCTAAGAAGTCACCAACCTTGAAAATC AACTCGCAGACTGAAGAGTTTGGGCCATGTGATAAGATGAATTATGGGTTCGGCTATGATGATTCGCATGATGCGTACAA GGTGAGTAAAGATTCCAATTCCAATCTTACCATTTTGAAGATAATTATTTAGGAATTCATAACAATATATGAGAAATTAA TATTTACATAATTAATACCACCACAGTTTGAAATTCTTACTCTAGTGGCTACATCGTGATCCTTCGCATGTTTCTAAAGT GTCCCCGGTTGAATTTCATTGTTGGGACAAAAAATATACATCATTTTGAAACAAATGATCCAGCCAAAAAACCTCTACAT TACGAGCAACAATTTAAAACTATAATAGCACTTTGATTAATTCAATCTTGCAATTGGATTTATTATTCTTTGCACCATGG AGAATTTTATCATCTAAACTTGTCTTTAATGTAAAAAATGATGTATTTTTTTGGGTCAAGTCAATCGTCACTTCAAATTT TCATGAAGACTAATTTGATCATAATAAAGAGAGATCAATTTAACATACAATTAGTCAATTTAATTTAATAAATGAAATGA ATATTTTAAGACTAAGTGACTTACATTATTCAGCACAGATGTATGGTCCTTTTGGATAAATTTTACTATTTACTCTTCGC TAGGTGGTGGTGGTGTTTTGGAATTGCACTGAGCAGAAAATGGAGACAATGGTTCATTGCATGGGTGATAGTTGTTGGAG AAAAAAATCCAGCGATCCTAACTTCCCACTTCTGCTGAAACAAGTCAATGGTCAGTTTGTGGGTGGTTGCCTTAACTGGT TAGCACTTGACAAGGTGAATGATCTCAACTATCAATGGAACAATGTTACTCTCAAGAACTTGGTGATTGTTTCTTTTGAC ATGCGTGATGAGATATATAAATTTATATCACTGCCCGAGGGTGTTAGAGATGTGCCTCATGTCGAGCCAGATCTTGGGAT TTTAGGGAATCACATGTGTCTTTTCCATCACAGTAAAAGAGCTGAAATTGTTGTGTGGCAAATGAGAGAGTATGGAGTTC AAAAGTCTTGGACTCAATTAGTGAGAATCGGTTATCAGGATCCACAATGTGATGATTCTGTGCTTCGTCCGTTGTCGATG TGCTTGTCTGAAGATGGTGACTTTCTGTTGCTCACCTACGCTGCAGGGGTGGTAATATTCATGTGTAAATTAAGAGATAA TAGTGTGGAGTATACTGAACTTCCTGACAAAGATTGGTTGAGTATCAGTAGTTATGTACCAAGTCTAATTGCGCCTTAAG ATTAAACTCTTCTTTGAAAATTTGTTCTTATAAATTTATGTTGAACTAGACAATGAGTTGAAATGATTTTTTTTAATTGA GTTTCTAACTTTGCATGTAGCTTTGTTGTCCACTCACTGTACCATTAATGAGAACAAAGGAGATGAGTAAATAAAAGAAT AG
CDS sequence (LotjaGi1g1v0600500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATAATCCCCATGTTGTTCCCATTCTCCCTTCGGAACTCGTGGAGGAAATCATTTCACGGCTTCCCGTGAAAACCCT AATGCAACTCATATCCGTTTCCAAGTCATGGAAATCACTCATCATCGATGATCCAAAATTCGCGAAATTGCACCTCAAGA ATTCGCCCAAAAAGACGCACTTCATCATCAATTTTGAAGATGAGATCGATTACATTGACGTGGATACTTGTTTCATTTCG TGCTCCGTGCAGCGTTTTCTAAAGGAGCCTTCATCCACAGTCGACGAAGGCAAGTGCTACCGTTTGAAGGGAACAAATTC AGTTGTTGGCTCCTGCAACGGCTTGGTTTGTTTGGGAAACTTTTATGATGTTGCCCTAATTAAAGAATTTTGGGTCCAGC TCTGGAACCCTGTTATGCGCTTGAGTTCTAAGAAGTCACCAACCTTGAAAATCAACTCGCAGACTGAAGAGTTTGGGCCA TGTGATAAGATGAATTATGGGTTCGGCTATGATGATTCGCATGATGCGTACAAGGTGGTGGTGGTGTTTTGGAATTGCAC TGAGCAGAAAATGGAGACAATGGTTCATTGCATGGGTGATAGTTGTTGGAGAAAAAAATCCAGCGATCCTAACTTCCCAC TTCTGCTGAAACAAGTCAATGGTCAGTTTGTGGGTGGTTGCCTTAACTGGTTAGCACTTGACAAGGTGAATGATCTCAAC TATCAATGGAACAATGTTACTCTCAAGAACTTGGTGATTGTTTCTTTTGACATGCGTGATGAGATATATAAATTTATATC ACTGCCCGAGGGTGTTAGAGATGTGCCTCATGTCGAGCCAGATCTTGGGATTTTAGGGAATCACATGTGTCTTTTCCATC ACAGTAAAAGAGCTGAAATTGTTGTGTGGCAAATGAGAGAGTATGGAGTTCAAAAGTCTTGGACTCAATTAGTGAGAATC GGTTATCAGGATCCACAATGTGATGATTCTGTGCTTCGTCCGTTGTCGATGTGCTTGTCTGAAGATGGTGACTTTCTGTT GCTCACCTACGCTGCAGGGGTGGTAATATTCATGTGTAAATTAAGAGATAATAGTGTGGAGTATACTGAACTTCCTGACA AAGATTGGTTGAGTATCAGTAGTTATGTACCAAGTCTAATTGCGCCTTAA
Protein sequence (LotjaGi1g1v0600500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNNPHVVPILPSELVEEIISRLPVKTLMQLISVSKSWKSLIIDDPKFAKLHLKNSPKKTHFIINFEDEIDYIDVDTCFIS CSVQRFLKEPSSTVDEGKCYRLKGTNSVVGSCNGLVCLGNFYDVALIKEFWVQLWNPVMRLSSKKSPTLKINSQTEEFGP CDKMNYGFGYDDSHDAYKVVVVFWNCTEQKMETMVHCMGDSCWRKKSSDPNFPLLLKQVNGQFVGGCLNWLALDKVNDLN YQWNNVTLKNLVIVSFDMRDEIYKFISLPEGVRDVPHVEPDLGILGNHMCLFHHSKRAEIVVWQMREYGVQKSWTQLVRI GYQDPQCDDSVLRPLSMCLSEDGDFLLLTYAAGVVIFMCKLRDNSVEYTELPDKDWLSISSYVPSLIAP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 85 | 84 | 1.2E-6 | – | |
| ProSiteProfiles | 4 | 50 | 47 | 12.253 | ||
| SUPERFAMILY | 7 | 86 | 80 | 1.1E-11 | ||
| Pfam | 10 | 46 | 37 | 2.7E-8 | ||
| SMART | 10 | 50 | 41 | 3.6E-7 | ||
| PANTHER | 15 | 336 | 322 | 2.6E-40 | – | |
| PANTHER | 15 | 336 | 322 | 2.6E-40 | – | |
| TIGRFAM | 110 | 363 | 254 | 8.4E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0600500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…