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LotjaGi1g1v0600600.1

Overview

Field Value
Gene ID LotjaGi1g1v0600600
Transcript ID LotjaGi1g1v0600600.1
Lotus japonicus genome version Gifu v1.2
Description Squamosa promoter-binding-like protein; TAIR: AT3G57920.1 squamosa promoter binding protein-like 15; Swiss-Prot: sp|Q01JD1|SPL7_ORYSI Squamosa promoter-binding-like protein 7; TrEMBL-Plants: tr|A0A072TXZ6|A0A072TXZ6_MEDTR Squamosa promoter-binding-like protein; Found in the gene: LotjaGi1g1v0600600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:114525692..114531503) extracted from Lotus japonicus Gifu genome v1.2.

TGGAATCTTCATATCGACAGAGGCTTCTCTCTCTCTCTCTCTCACTTCATTCACTCCCTCCTCCTGCGTGTTCTGAACGA ATAGGCTTTACAGCTCTTTTGGTCATAATAAGAGCACTTTAAAACCTCCATTGGACTATAACAAACACAGAAACCTGCTA GCTGCACAATCCTCCATTATCTCTCCCTTTCTTTCCTCTTTCATACCAACCAAAAAGAAAAAGCAAGATCTCACTCAGAA ATATAGCTCCTTCTTCCCATTCCACTTCTGCTATACCTTCCAAACTCCTCATCAACTCAACTCACCTATTCAAATTCTTT TCTTTTAATTTCTTTTTTTATTTATAAAATATATTCTTCCAATTATGGACTTTGGAGGGAACATGTTCTGTCTTAACGGT AACAGTAACGGTTTTGCTTGGGGGGACAATTCATGGGAAACCGCCACTACTTGCAACAACAGTTCAAGGCTATTCCACAA CACTGGGGAGAGCTCCACCGTTAACCTCCATCAAGCTGACGGTGGTTTACGGCAGCAGCAGTTTCCCTACGGCGGAGATG GGTCCCACTCCCATGTGTACGCGGACCCGCATCTCACTTGCTTGAAGCTTGGGAAGAGGCAATACTTTGAGGATGCGAGT GGTGGTGGTGGAGATAAGAGGGGCAGAGGGTGCAACGGTGGTGGTGGGGTGAAGGCGGCGGCGAGGTGTCAGGTGGAGGG GTGCCACGTGGCGCTGGTGAACGCGAAGGAGTACCACAGGAGGCACAAGGTTTGTGAGATACATTCCAAGGCACCAAAAG TTGTGGTGATGGGGATGGAGCAGAGGTTCTGTCAGCAGTGTAGCAGGTTATCATTCTATCTAATATCTCTCTATTCATAA TCAAATTAGTCACTGAGTGAATAATTAAAGTCTTGTTAGAAGTCAAGTTTTCATGAATAATTTTCCCCGGTGAGATTAAT ATTCACATGAATTATGTGCTGAGACATGTGACAAGTGAATATTAGATTTTGTGTTTGGGTTGAAAATTTAAATTAAGTTT TACCATAAATTTACTGTGTAAATTATCCACGAGTTGTGGTGTGGTGATTGTTCACCTCGTTCAGCATGAGGTAAGGGGTT TGGTATTACAATGAAGTACTTTTAGTCGTTAGTCGTTTACTGTTTAGAGCGAGCACTAGGGCTGTCCACCGGTCGGGTTC GGTCGGTTTCGGGCCCAAAAAGCTCCACCGACCGAACCCGCATGTCACAAAACTTGGCCCATAACCGACCGTGACATCTT TCGGTTTGGGTCGGTTTCGGGTTTCTCGGGTAATGGGCGGGTCGGGCGGGTTGGGTCGGTTTCGCAGAGATCAAGTAGAT GAAAAATTTCAATTTGAGCAATTTCAGATCAGATCCAGATTCCAGAGATACTACCAAGTATCAACTTACCAAGAAGTCAA GAATGTTTTCCATTGCTTTTCTCATGCGAAAGAGCATGTTCACTTCATCCTTGCGATTTCACATCAGAATCGATTGATGA AGATGAACAGGCTATTTCGGATCAGAGAAGCATGGAGCCACGGAGGATGAACCGATTTCAGAGGCTTAGGGTTTGAGTCT TTGAGATGCGTGAGACTGTGAGGGAAGAAGGCAAGAAGCTCATGCAGATGCTGTTGCACTGTGGAGTGTGGTGGTGGAGT GGCTAGACCGCTAGGGTTTGAGATGTGTGAGGGTGCAGAGGATGGCGGCGCAGAGGATAAGGAGAAGGGTGGTGGCGGCT AGGGTTTGGAGTTTGGAGAGAAGAAGAAGGGGAGAAGGGTGGTGGTGGCGGGTTTGAGAGGTAGGGTTTCTGGGTTTGAG AGAAGAAGAAGAAGAGGAGAAGGGTGGTGGCGGCGGCGGGTTTGAGAGAAGAAGAAGAAGAGGAGAAGGGTGGTGGTGGC GACTGGCGACGGCGGCGGGTTTGAGAATTGAGAGAAGAAGAAGAAGAGGAAGAAGTGAAGAGAAAGAGAGAGGAGCCGGA TTATTAGGTTTAGTTTGGGTTGGGTTTGGGCCGGGTGAATTTTTTTTTTATAGGTTTAGTTTGGGTTGGGTTTGGGCCGG GTGAAATTTTTTTTTTATATTGGGTTCGGTCGGTTCGGTCGGACCAGGCTCCAAACCGTAACCGACCGAACCAACCCAAA TGGAGCCGGTTTTTCTCCATTACTCAACCCGCCACCCGACCCGACCGAACCGAGAAGGCCTTTTTTGGTAGCGGGCCGGT CGGTTTCGGTCGGGCCCAAAAAAGTTGGACAGGCCTAGCGAGCACCTCCGACAAAATGATTAGTGACAGCTATCGAATAT AAGTTTAACAAATATCATCTAATTAAGATGAAGTTTGAAAATATGTAACATCTTATATTGTAAGATAATTGTGAAATCAA ATTTAGGTGTAAGTTTATTTTGTTCTTTCCACTTTTGACCTCTATAATAGAGAGATAGACAGAGACTATATATTGTTATG GTTTTGGTCATTAACTTATGATATAGGGTTAGTTCATTATTTAGTTAATTGAGATAACTAGCTAACAAGAAAATGTGTTG GTGGGGATTGGATATTTTAGGTTTCACGTGGTGTCAGAATTTGATGATTCAAAGAGGAGTTGTAGGAGGAGACTGGCAGG TCACAATGAGCGAAGAAGAAAGAGCTCACATGATTCTGTTGCAAGGAATTCTCCACAAGGTAAACTGTGTTGGTTATTCT TGAACTTGCAACTAATTCATAAAATACTGAAGTTTTAAATGTTAGTTGTTAGTAAATTAGTACAAATTATCCTTTCTCAA TGTTCGAACCCTGACCCTTCCTTCACCGACAATTACCCTTAACTCAACCATGTGAGTTACCAATTCCACCCCATTGATTT TTTATTATGATGTTTGATCAGTACTTAATTGCAGTTTGTCTTATTATTATATATAGTCTTATTTTAAACTAAAACATTCG CCAACATGGATAAAGAAAAACCGTTTCACATAAAGAAGAGCATATTGTAAATAAATATAATGACAATTATATTTTATAAC AGTTTTGTCTATGATGGACAAAAAAAAATCCGGTTCACAAGTTAAATGACTTCTGTATAAATTTCTTCAGCATGAGAAAA CATGAGGGAATTTCACATAAGAGGATCTCCCCCTATAAGGAACATATTGTAAATAGCTTGTACTAAATGTTAGTAGTAAA AACATGGTTTATGGGTAAATTAGTTTTTAACATGATAAACTAAAGAAATGTCATTTTATAACAAGTAAAATCATGTAGTT CATGGGTAAATTAGTTTATACATCTCTCACTTCTCTCTGTTATTTCTCTCACAAGGTCTTGGTGTATTTGAGTGATCAAA AGTTATTTTCCTTCCAAACAACCACAATATCATCAACATATGTGATTAACACAATAATGGATGGTGATTGATGTTTCATT AATATGGAATAATCTTCTTTAGCTTGTTGATAAAAAATGGAAATGAGCAAATAAGAGAATTATTCATACCACTATCCACT AGCTTGTTTCAGCCTATAAAGAGACTTTTGAATCTTGCAAGCTTGAGTTTTTGGATTGCCAACCAGATCTTGAGGAATAG ACATGTAAACATCTTCCTTCAATTCACCATGGAAGAACGCAGTGTTCACATCAAGTTGGTGAATATGCCACTGATAAACA AAAGCTAGTGCTAAAGTTAATCAAATTGAAGCGGAGAAAAAGTAACGAAGTAGTCTACTCCTTTGATTTGGGTATAACCT TTAGCATCCAATCGAGCCTTGTAGCATTCCATAGAACCATTAACCTTTGTTTTGATTTTGTAATCCCACTTACTCCCAAT AGGTATGATTCCATTCGGTAAATCAATAATATTCCATGTAGTATTCCCTTGTGAAGCTTCTAACTCAACTTTTATAGCAT CCACCGACATAGATGTTGACATGCTTCTGCATTTGAGATTGGTTCAAACATAGAGGAAATATATCAAGAGAAAGCCTAGT GTGAAGGAGACAAAGACTCATAGGATATGAATGTAGAAATAGGATAAGGTGTTGTGTGATGAGTGGAGGAATTACAATAA TAATCTGCTACATGTTTGGGAGTATGTTATGTGCTGGTGGATATTCTTGTTTGAGGTGCAGAAGATGGAATATGGGTATT GGGAAGTATTGATGTGTAGGGGTGACAAGAAAGTCGTGTGAAATCTGTGGTCTGGGGAAGTGGTGGTACTAGTAGTATTA TGTTCTAAGTATTGTCAGGGTTGAGTTTGTACTCTAGTGGAACATCAGAAGCCATGTGACCTCGTGCTCTTTATGTCTAA ACTTGAGTCTCGTCACTTAGTTTTAGTTCATAGTCTTTTGTTTTTCATTAAGCTCATTCTCTTATTTTTAGACTTATTTT TGGGATCATGGGTCGTTAAGTCATTTCGATTCTGATACTACTTGTTGGACTTGGAAGCATGAGACCAAAGTATTCTTGTA GGATGAGGTGAGTGTATTAGGGTGTTTTTGGTTCAACTAAGAGGAGAGGAGGGGAGGGAAGGGGAAGGGGAAGGGAGATT TTGTATCTTATCATATTTGCTTAAGAGGAGGGGAGGGGAAGGATTTTAAAACAACTTTATTTTTGTTACCCTTACTTATC TTGAGAACCTAAATTTGAGGAAGGCAATTTCTGTCTAACAAAATATTTTCCTTTCAAACCTCCGCACTTCTGGAGAGAGA CGAATTGAGTTAGGAGGGGGTTTGGCCCCCTACATTCCCCTCCCCACCCCTCCTAAAAATTGAACCAAATAAGATAAGTT TAAAAGAACCTCTCACCACCCCTTCAGGCAAATATTATGTGGATCCAAATCCTATGTCGCCATTTAGTGTCCCCTTATGG TTGGTCATAATTCATCTACTGTGCATGTAATTCGAAGATACATTTTTTCAATTCCATAACTAATAAATTGTGTAAATGGA AGAGCCATACATAATTTAAAAGGTCTTCGTTAGAACATATGTTATATTTGCATTCAAAGGTCAACTACATATTTTGCAAG GTTGCATTTGCAGTCTTATTATTGATGTGTTCTTCCTGCATTTTAACCTTCCTGCATATTTCATTTTTATCTAGCAGTAA AACAATTACAAGTGATGTTGTGTGTATGTGTGTGTATTCAAAAATAAATAAATAGTACTTAGAATTAAATTGACAAAAGT AATCTCAGCATGCAATTTTCTTGTTCATAGACAATATGCTGATAACTGATCTTCCGTACTTATTATCAGGAGAATGTGCT CTCTCTCTTCTGTCAACTAAGAGAGATTCTTGGCTTTCCCCTGCTGATCTCCCCACAAGATGCAGTGCTGCATTACGTGA ATTGATCGCTGAAAACCGGGCAGCCAGCATGGCTAGGCAGTTTGTTTCAGACAGGGACTGGAATCTGCACCATCATGCAG TGGAAGACTTCAGGGAAATCCAACCTGAGTCCAATTATTTCCCACACCAGATGTTTCCTCAAACACAGTAATGGAGGTGC TTGGCCTAAAGTTTAGGGGAACAATAATGCATAAAGGGAGGTCTCTTTTCTAAAGTTTTCAATTCTTTATTTTGCTAAGA AATAGCAATGTTGAACTTTTTTCTAGGGCCATGATGCTAGCTAGACTAGTTAGGGTAATAAATTGTAGGATTGTATTTGC TTCTCTAATCATTGCTAAATATTTGCAAGGTTATATTTTTAATAAATTGAGTTTGCTTATATGTTTTGCATTATAGCTCA CTCAGAATTTATGGAGGAGAATGCAGAATTAGCTTTTGCTTTTGAACTTCAC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0600600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACTTTGGAGGGAACATGTTCTGTCTTAACGGTAACAGTAACGGTTTTGCTTGGGGGGACAATTCATGGGAAACCGC CACTACTTGCAACAACAGTTCAAGGCTATTCCACAACACTGGGGAGAGCTCCACCGTTAACCTCCATCAAGCTGACGGTG GTTTACGGCAGCAGCAGTTTCCCTACGGCGGAGATGGGTCCCACTCCCATGTGTACGCGGACCCGCATCTCACTTGCTTG AAGCTTGGGAAGAGGCAATACTTTGAGGATGCGAGTGGTGGTGGTGGAGATAAGAGGGGCAGAGGGTGCAACGGTGGTGG TGGGGTGAAGGCGGCGGCGAGGTGTCAGGTGGAGGGGTGCCACGTGGCGCTGGTGAACGCGAAGGAGTACCACAGGAGGC ACAAGGTTTGTGAGATACATTCCAAGGCACCAAAAGTTGTGGTGATGGGGATGGAGCAGAGGTTCTGTCAGCAGTGTAGC AGGTTTCACGTGGTGTCAGAATTTGATGATTCAAAGAGGAGTTGTAGGAGGAGACTGGCAGGTCACAATGAGCGAAGAAG AAAGAGCTCACATGATTCTGTTGCAAGGAATTCTCCACAAGGAGAATGTGCTCTCTCTCTTCTGTCAACTAAGAGAGATT CTTGGCTTTCCCCTGCTGATCTCCCCACAAGATGCAGTGCTGCATTACGTGAATTGATCGCTGAAAACCGGGCAGCCAGC ATGGCTAGGCAGTTTGTTTCAGACAGGGACTGGAATCTGCACCATCATGCAGTGGAAGACTTCAGGGAAATCCAACCTGA GTCCAATTATTTCCCACACCAGATGTTTCCTCAAACACAGTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0600600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDFGGNMFCLNGNSNGFAWGDNSWETATTCNNSSRLFHNTGESSTVNLHQADGGLRQQQFPYGGDGSHSHVYADPHLTCL KLGKRQYFEDASGGGGDKRGRGCNGGGGVKAAARCQVEGCHVALVNAKEYHRRHKVCEIHSKAPKVVVMGMEQRFCQQCS RFHVVSEFDDSKRSCRRRLAGHNERRRKSSHDSVARNSPQGECALSLLSTKRDSWLSPADLPTRCSAALRELIAENRAAS MARQFVSDRDWNLHHHAVEDFREIQPESNYFPHQMFPQTQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31251:SF109
69 274 206 4.1E-89 –
PANTHER
PTHR31251
69 274 206 4.1E-89 –
Gene3D
G3DSA:4.10.1100.10
105 176 72 2.1E-34
IPR036893
ProSiteProfiles
PS51141
112 189 78 32.317
IPR004333
SUPERFAMILY
SSF103612
113 194 82 2.35E-38
IPR036893
Pfam
PF03110
115 188 74 6.6E-32
IPR004333
MobiDBLite
mobidb-lite
179 198 20 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0600600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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