Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi1g1v0601700 |
Transcript ID | LotjaGi1g1v0601700.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Pectin lyase-like superfamily protein; TAIR: AT2G43890.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|P48979|PGLR_PRUPE Polygalacturonase; TrEMBL-Plants: tr|I1J6I6|I1J6I6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0601700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:114666051..114668572) extracted from Lotus japonicus Gifu genome v1.2.
TATACACATTGTTTACTTTCGAAATTAGTTATTATTTTTGGAACATATATACCTAGAAGCCAGAATAATGACTTGTGTTA ATGTTGGAACTATCATCTGGGTATTGTTATGCAACACCTTGCTAGGGTCTTCACTTGGAGCTCCAACCTCTAAATACATT AATGTTGTTAATTTTGGGGCAAAAGCAGGTGGAAAAATTGACTCCACTGAACCATTTATAAAGGCTTGGCAATCAGCATG TACTAGCCTTAGTCCTGCCATTGTTTATGTGCCAAAAGGGAGGTATTTGCTGAGAGCTGCAAATTTCCGAGGTCCATGCA AGAGGAATGTCACATTCCTCATTGATGGAACTCTTGTGGCTCCTGAAGATTACCGGGAAATTGGAAACTCGGGATCTTGG ATTTTGTTCAATCATGTGGAGAATCTCACTATTTCTGGTGGGAACTTGGATGCTAAAGGTGCTGCCTTTTGGAATTGTAG GAGGTCCGGGAAGACCTGCCCGGTTGGAGCAAGGGTATGTTTGATTATATGAGTTTGCATTTCCACACTTTATGGGCAAT TGGATCACATTAAAAACTGATCCGCCATAAAACACGTTTTTACCAATAACATTTAGTAAATGTTATTTATAATATAGTAA TATACTCCTTATGTACTAAAATTAGTGAAGTCTATTTGACTTTTGAACCAAATTTTTCTTGGTGCACAACAAACAAAGTC ATATGCATGAGGGAATTCTACTGTGGGTCATGTTAACAACTAGTCCGCTCGTGAACATGTTTTTACTACTAGCATTTAGT ATATAAGATATTTTCAATGGTTAGAAGTTCTTTTAATTTGTGAATTAGATTTTTATTTGCCACTGAATACATGTGGATAA TTGCAGACAATGACATTCAACTGGGTGAACAACCTGGTGGTTAGTGGCATTAAATCAATCAACAGCCAGCTAAGTCATCT TGTGATCAACACCTGCAACAATGTTCTTGTGAAAAATGTGAGGCTTATTGCACCAGACCAGAGCCCTAACACTGATGGCA TTCATGTTGAACGCTCAACAGGGGTTACCATTAACGGTTGTACCATGAAAACTGGCGATGACTGCATATCCATTGGTGAT GGCACCTACAATCTATTCATGTCCAACATAAAATGTGGCCCCGGCCATGGCGTAAGGTTAGCACCACATGACTAATCTTT TAAAGCTACGTTTATTTAACATGGAGAAATAAACACAAGTACTCCAAATACATATTTGGCTATGAGGTTTTTACATAAAC AGTTACATATGTTTTTAGTACATAAAAAATGGAGTTGAGTTGAGTTTAGTACCAAATCCAATCGTTCATTTGGAAGTACC AAATCCAATTGCTCATATTTTACATGAATTAAAAACACTTAACCCAACAATTTTTCATAAAGTTGAAAACTGATTTTGAA ACCAGAACACCAATAGAAGAGTTTGCTTATTTCAACTTTTCTACAGAAAAAAAAAATCACTTTTATTTAAAAAAAACCTG TACTGTGTTTAATTATTTATGTTATTGAAGAAATCAGAATAAGAAAAAAATAAAAAATAAAAACGTAAAAAGCTTTGAAA TGGTCTTAAAATGGAGATCAATGTATTGTGTATCCCAAAGTAGAAAAATGACAGGTAACAATCTAAAAATGTTTGTCACA CATACAGCATTGGAAGTTTGGGAAAAGAAATTGATGAAAAAGGTGTTAGAAATGTGACTCTAGTGAATTCCATTTTCTTT GGATCGGACAATGGGGTGAGGATAAAGGCTTGGGCTAGACCAAGCAACGGGTTCGTTAGTAACGTTCTCTTCCAAAACAT CTCCATGAACAACGTTGAAAATCCCATCATCATTGATCAGAATTACTGCCCCAATAATCAAGGTTGTCCTCACCAGGTAA TATAATCATAATGAACTAATCAATTATAATTAGATATTGACTATAACTATATTCTGCTCTTTATGATCTACATATTTTTT AAATAACAAATATATTTCATTATTAATGTTTAACAGACTTCAGGAATCAAGATTAGCCAAGTTACTTATAAGAACATAAC TGGAAGTTCAGCAACAGCAGAGGCAGTAACATTTGATTGCAGCCCAAGTAATCCATGCCAAGGGATCACATTGGAGGATA TAAACCTAACCTACAGCAAAAAAACTGTAACATCATCGTGTCACAACGTTGGGGGTACAAGTAGTGGAACATTGGTACCA GAAAGTTGTTTGTAAATGAATAGAGTAAATACATTTATTAATATCTTAACATAAGACACATTTAATTAATATAATTTTCA TGTATTAAAGAGGACTATTACTCTATTAGGAAATTATTCAAAAGGAAATGTTTCAGCTCAATCTTGAAATACAGTTTACG GTTCCCATGGGCCATGAATTCAGTCTATCCCAGTAACCATGTAACATAAAACAGTAACATTTTAGAAAGACAGTTGTTAT TCTGTTTTTTGCTGCAGAACGTAATTATAAAAAGTAATGAGG
CDS sequence (LotjaGi1g1v0601700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTTGTGTTAATGTTGGAACTATCATCTGGGTATTGTTATGCAACACCTTGCTAGGGTCTTCACTTGGAGCTCCAAC CTCTAAATACATTAATGTTGTTAATTTTGGGGCAAAAGCAGGTGGAAAAATTGACTCCACTGAACCATTTATAAAGGCTT GGCAATCAGCATGTACTAGCCTTAGTCCTGCCATTGTTTATGTGCCAAAAGGGAGGTATTTGCTGAGAGCTGCAAATTTC CGAGGTCCATGCAAGAGGAATGTCACATTCCTCATTGATGGAACTCTTGTGGCTCCTGAAGATTACCGGGAAATTGGAAA CTCGGGATCTTGGATTTTGTTCAATCATGTGGAGAATCTCACTATTTCTGGTGGGAACTTGGATGCTAAAGGTGCTGCCT TTTGGAATTGTAGGAGGTCCGGGAAGACCTGCCCGGTTGGAGCAAGGACAATGACATTCAACTGGGTGAACAACCTGGTG GTTAGTGGCATTAAATCAATCAACAGCCAGCTAAGTCATCTTGTGATCAACACCTGCAACAATGTTCTTGTGAAAAATGT GAGGCTTATTGCACCAGACCAGAGCCCTAACACTGATGGCATTCATGTTGAACGCTCAACAGGGGTTACCATTAACGGTT GTACCATGAAAACTGGCGATGACTGCATATCCATTGGTGATGGCACCTACAATCTATTCATGTCCAACATAAAATGTGGC CCCGGCCATGGCGTAAGGTTAGCACCACATGACTAA
Protein sequence (LotjaGi1g1v0601700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTCVNVGTIIWVLLCNTLLGSSLGAPTSKYINVVNFGAKAGGKIDSTEPFIKAWQSACTSLSPAIVYVPKGRYLLRAANF RGPCKRNVTFLIDGTLVAPEDYREIGNSGSWILFNHVENLTISGGNLDAKGAAFWNCRRSGKTCPVGARTMTFNWVNNLV VSGIKSINSQLSHLVINTCNNVLVKNVRLIAPDQSPNTDGIHVERSTGVTINGCTMKTGDDCISIGDGTYNLFMSNIKCG PGHGVRLAPHD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 24 | 24 | - | – | |
SignalP_EUK | 1 | 24 | 24 | - | – | |
Phobius | 1 | 7 | 7 | - | – | |
Phobius | 8 | 19 | 12 | - | – | |
PANTHER | 13 | 246 | 234 | 1.1E-116 | – | |
PANTHER | 13 | 246 | 234 | 1.1E-116 | – | |
Phobius | 20 | 24 | 5 | - | – | |
Gene3D | 21 | 248 | 228 | 3.6E-62 | ||
SUPERFAMILY | 23 | 246 | 224 | 1.8E-65 | ||
Phobius | 25 | 251 | 227 | - | – | |
Pfam | 58 | 245 | 188 | 5.9E-46 | ||
SMART | 179 | 205 | 27 | 76.0 | ||
SMART | 206 | 227 | 22 | 15.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0601700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…