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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0601800 |
| Transcript ID | LotjaGi1g1v0601800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Scarecrow transcription factor family protein; TAIR: AT4G00150.1 GRAS family transcription factor; Swiss-Prot: sp|O81316|SCL6_ARATH Scarecrow-like protein 6; TrEMBL-Plants: tr|A0A0L9U614|A0A0L9U614_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0601800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:114677860..114681010) extracted from Lotus japonicus Gifu genome v1.2.
GGTGCTCCACAAGCACAAGAGAAAAAGCAAACCCCATTTAAAGCTTTTTTCCCCTTTGCTACTGTGCACATCACAACAAC AAAGATGGGTTTGTGAAGTATCCTAGAGAGAGAGAGAGAACAAAACAACAAGAAGGCAAAGAGGAAGAAGGAAAAACAGT AACATGATGCAGGAGGAGCATGAACCAGGTGAGGTGTGTTTTGTTGTTATTGTTGTTGTTTCAGTTGTAGTTGTTGTTCT TGTTCTTGTTGCTGACATGGGTTTGTTGAACAAAGCTGCATGCATTTGACAACTAGTATGTCTGTAGTATTATGTGTTTG TTTCTGTCACAACTCAGATCTTGTTTTTTTTTGCTATCTCCAGAGGTATTTTGAGGTGTCTGTGCATCATCATCATCTGC TATTTGAGCCCTTTGACTGAAACCCATTTTGGGTTTGAGTTTGAGTTTGAGTTTGCACTTTCTTTCAACTTGCTTGTTGC TGTTGTTGATTTAGATGAAGGCCGTGCCCCTTCCCTTTCAGGAATTTCGAGGGAAAGGGGTCTTAGATTTTGCTGCTTCT GCTGGTGTTGGTGATTCTTTGCAGCAAGAGCAGTTTCTGCAAAGGTGGAACACTCGCAGGGAAAACTGTTGCTATGTGGG CTTTGAGCCCACCACCTACACAAACCCACCCACACCTTGCTCCACACTGTCTTCCTCACACGGCAGCACCGGTGGCGGTG GCTGCGGCTCCACCGATAGCTCCACCGGCGCAGCAAAGGTCTCAGGCGAAAAGGGGAACAGCAACCACAACCCACCCCAA GCAGGGTTAGAAGTTGGCCAGGGAAGATGTGGGATGGGAATGGAGGATTGGGAGAGTGTGCTTTCTGAGTCACCGGGTCA AGATCATTCCATTCTGAAATTGATTATGGGGGACATTGAGGACCCATCTATGGGATTGACCAAGCTTTTGCAGGGGGGAA ATTGTTCTCAGGATGTTGAATTCAATGGGGTTGGCATGGGTTTTAGTTTTGTGGATCAGAGTTCTGTGCTTGACCCTATT TCTGGTGGGAACTTTGGGGGCAGCATTGACCCTTCATCTGGTCCTGGGAATTGTTCTGATTTCAATTTCAATACCCACAA CAATGTTAACTCTAATGTTGCAAGAGCAGGTTCAGGTGTGAATCCAAACCCTGTGTTCCCTGCTTCAGCTAGCAATCTCT CACCGGTTTCCCTCCCTCCGGGTATGTTTCAGCCACAGCAGCAGCATCATCAGCCGATGGAGTCTCTTGATGAGAAGCTG CAGCTTTTCAATCCTCAGTTCATTTTGAATCAAAGCCAAGCACAGTTTATGCCCAACCCAGGCTTGGGCTTTCCTTTGAC ATATTCCCAGCTGCAAGAACATCATCAGCTTCACCCACAGCAGCCTCCGGCGAAACGCCTCAACTCTGGCTCTGCTGGAC TAAATTATCAGGTTCCGAGGACGCCCTTTTTCGATTCTGGCCAAGAGATGTTTCTTGGGAGACAGCAGCAGCAGCAGCAG CAACAGCAGCTCCAACTGCTTCCACACCATCTGCAGCAGAGGCCATCATCCATGGTGGTGGCACCGAAGCAGAAAATGGT GAACACCGGTAACGGCGGCGAAGATGTGGCAACACACCAGCTTCAACAGGCCATTATTGACCAACTCTTCAAGGCTGCTG AACTGTACGACGCCGGTAATCCGGAACTCGCGCACGGGATATTGGCGCGGCTCAATCACCAACTTTCTCCCATTGGGAAG CCTTTTCAAAGGGCTGCTTTTTATTTTAAGGAGGCATTGCAATTACTTCTCCACTCGAATGGCAACAAAAATCTGACCTT CTCACCTGCTGGCCTATTGCTCAAGATTGGCGCTTACAAATCGTTCTCAGAAATCTCACCGGTCCTGCAGTTTGCCAATT TCACTTGTAACCAAGCACTGCTTGAAGCTGCTGAAGGGTTTGATCGCATTCACATAATAGATTTTGATATTGGGTTTGGT GGGCAGTGGTCTTCTTTCATGCAAGAGTTAGCACTCAGGAATGGTGGTGCACCTGCACTCAAGATCACTGCATTTGTGTT ACCCTCTCACCATGATGAAATGGAGCTCAGTTTCACACAGGATAATTTGAAGCAATATGCTAGTGAAATCAACATGTCTG TTGAGCTTGAGATTCTGACCCTCGAGTCATTGAATTCTGCTTCGTGGCCCCAGCCACTTCGTGATAGCGAAGCTGTTGTG GTTAACTTACCTATTGGCTCTTTCTCAAATTGTCCCTCATATCTTCCTCTGGTTCTTCGCTTTGTGAAGCAGCTCATGCC CAAAATTGTGGTTACATTGGATAGAAGTTGTGATCGAACTGATGTACCATTTCCTCAGCATCTAATTTTTGCACTCCAGT CTTATTCGGGGCTGCTTGAGTCACTTGATTCTGTTAATGTTCACCCAGATGTCCTTCAGATGATTGAAAAGTATTATGTT CAACCAGCAATGGAGAAGCTTGTTTTGGGCCGTCAGCGTTTGCAGGAAACAACACTTCCTTGGAAAAATATGCTCTTGTC ATCTGGTTTCTCGGCCTTGCCATTTAGTAACTTTACAGAGTCCCAAGCAGAGTGTTTGGTGCAGAGGACTCCGGTTAGGG GATTTCATGTGGAGAAGAGGCAGTCTTCCCTTGTTCTGTGCTGGCAAAGGAAGGATCTCATCTCCATTTCAACTTGGAGA TGCTGAGGGGAGCCGTTTAGCGCCTTTGAACTGCCAAACTGTTTTTAATTACAAAGGTGCTACATAACTTACTGCTTCTA TTGGTTTTTCTTGAATTTGCCTTGTCTATGGTTCAATGCTAATTGTCAATGTTTAGGATTTGTGTTATTTCCAGTGAAGG AAGTAAACATATTAATTAGCAACTGAATGGCAATTTATGAGCTCTCTTATGTGTAGTGATTTACTTTCAATGTGTGCATT CTATTTATGCATTTTGTCCCCTTTTCATTGGCTAAATTGTATGGCTTTTCTTGTATACTTGACAAGAAAGTAACACAAGT CACACTGTAAAGTGAAGACTTTGCTTGATCCCTGCCAAAGTTTCTCTCAAACATATTGCTATATGAACAGTATTCGCGTA GTTGGAGATGAAACTTAAATAGGAATTCTTG
CDS sequence (LotjaGi1g1v0601800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGCCGTGCCCCTTCCCTTTCAGGAATTTCGAGGGAAAGGGGTCTTAGATTTTGCTGCTTCTGCTGGTGTTGGTGA TTCTTTGCAGCAAGAGCAGTTTCTGCAAAGGTGGAACACTCGCAGGGAAAACTGTTGCTATGTGGGCTTTGAGCCCACCA CCTACACAAACCCACCCACACCTTGCTCCACACTGTCTTCCTCACACGGCAGCACCGGTGGCGGTGGCTGCGGCTCCACC GATAGCTCCACCGGCGCAGCAAAGGTCTCAGGCGAAAAGGGGAACAGCAACCACAACCCACCCCAAGCAGGGTTAGAAGT TGGCCAGGGAAGATGTGGGATGGGAATGGAGGATTGGGAGAGTGTGCTTTCTGAGTCACCGGGTCAAGATCATTCCATTC TGAAATTGATTATGGGGGACATTGAGGACCCATCTATGGGATTGACCAAGCTTTTGCAGGGGGGAAATTGTTCTCAGGAT GTTGAATTCAATGGGGTTGGCATGGGTTTTAGTTTTGTGGATCAGAGTTCTGTGCTTGACCCTATTTCTGGTGGGAACTT TGGGGGCAGCATTGACCCTTCATCTGGTCCTGGGAATTGTTCTGATTTCAATTTCAATACCCACAACAATGTTAACTCTA ATGTTGCAAGAGCAGGTTCAGGTGTGAATCCAAACCCTGTGTTCCCTGCTTCAGCTAGCAATCTCTCACCGGTTTCCCTC CCTCCGGGTATGTTTCAGCCACAGCAGCAGCATCATCAGCCGATGGAGTCTCTTGATGAGAAGCTGCAGCTTTTCAATCC TCAGTTCATTTTGAATCAAAGCCAAGCACAGTTTATGCCCAACCCAGGCTTGGGCTTTCCTTTGACATATTCCCAGCTGC AAGAACATCATCAGCTTCACCCACAGCAGCCTCCGGCGAAACGCCTCAACTCTGGCTCTGCTGGACTAAATTATCAGGTT CCGAGGACGCCCTTTTTCGATTCTGGCCAAGAGATGTTTCTTGGGAGACAGCAGCAGCAGCAGCAGCAACAGCAGCTCCA ACTGCTTCCACACCATCTGCAGCAGAGGCCATCATCCATGGTGGTGGCACCGAAGCAGAAAATGGTGAACACCGGTAACG GCGGCGAAGATGTGGCAACACACCAGCTTCAACAGGCCATTATTGACCAACTCTTCAAGGCTGCTGAACTGTACGACGCC GGTAATCCGGAACTCGCGCACGGGATATTGGCGCGGCTCAATCACCAACTTTCTCCCATTGGGAAGCCTTTTCAAAGGGC TGCTTTTTATTTTAAGGAGGCATTGCAATTACTTCTCCACTCGAATGGCAACAAAAATCTGACCTTCTCACCTGCTGGCC TATTGCTCAAGATTGGCGCTTACAAATCGTTCTCAGAAATCTCACCGGTCCTGCAGTTTGCCAATTTCACTTGTAACCAA GCACTGCTTGAAGCTGCTGAAGGGTTTGATCGCATTCACATAATAGATTTTGATATTGGGTTTGGTGGGCAGTGGTCTTC TTTCATGCAAGAGTTAGCACTCAGGAATGGTGGTGCACCTGCACTCAAGATCACTGCATTTGTGTTACCCTCTCACCATG ATGAAATGGAGCTCAGTTTCACACAGGATAATTTGAAGCAATATGCTAGTGAAATCAACATGTCTGTTGAGCTTGAGATT CTGACCCTCGAGTCATTGAATTCTGCTTCGTGGCCCCAGCCACTTCGTGATAGCGAAGCTGTTGTGGTTAACTTACCTAT TGGCTCTTTCTCAAATTGTCCCTCATATCTTCCTCTGGTTCTTCGCTTTGTGAAGCAGCTCATGCCCAAAATTGTGGTTA CATTGGATAGAAGTTGTGATCGAACTGATGTACCATTTCCTCAGCATCTAATTTTTGCACTCCAGTCTTATTCGGGGCTG CTTGAGTCACTTGATTCTGTTAATGTTCACCCAGATGTCCTTCAGATGATTGAAAAGTATTATGTTCAACCAGCAATGGA GAAGCTTGTTTTGGGCCGTCAGCGTTTGCAGGAAACAACACTTCCTTGGAAAAATATGCTCTTGTCATCTGGTTTCTCGG CCTTGCCATTTAGTAACTTTACAGAGTCCCAAGCAGAGTGTTTGGTGCAGAGGACTCCGGTTAGGGGATTTCATGTGGAG AAGAGGCAGTCTTCCCTTGTTCTGTGCTGGCAAAGGAAGGATCTCATCTCCATTTCAACTTGGAGATGCTGA
Protein sequence (LotjaGi1g1v0601800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKAVPLPFQEFRGKGVLDFAASAGVGDSLQQEQFLQRWNTRRENCCYVGFEPTTYTNPPTPCSTLSSSHGSTGGGGCGST DSSTGAAKVSGEKGNSNHNPPQAGLEVGQGRCGMGMEDWESVLSESPGQDHSILKLIMGDIEDPSMGLTKLLQGGNCSQD VEFNGVGMGFSFVDQSSVLDPISGGNFGGSIDPSSGPGNCSDFNFNTHNNVNSNVARAGSGVNPNPVFPASASNLSPVSL PPGMFQPQQQHHQPMESLDEKLQLFNPQFILNQSQAQFMPNPGLGFPLTYSQLQEHHQLHPQQPPAKRLNSGSAGLNYQV PRTPFFDSGQEMFLGRQQQQQQQQQLQLLPHHLQQRPSSMVVAPKQKMVNTGNGGEDVATHQLQQAIIDQLFKAAELYDA GNPELAHGILARLNHQLSPIGKPFQRAAFYFKEALQLLLHSNGNKNLTFSPAGLLLKIGAYKSFSEISPVLQFANFTCNQ ALLEAAEGFDRIHIIDFDIGFGGQWSSFMQELALRNGGAPALKITAFVLPSHHDEMELSFTQDNLKQYASEINMSVELEI LTLESLNSASWPQPLRDSEAVVVNLPIGSFSNCPSYLPLVLRFVKQLMPKIVVTLDRSCDRTDVPFPQHLIFALQSYSGL LESLDSVNVHPDVLQMIEKYYVQPAMEKLVLGRQRLQETTLPWKNMLLSSGFSALPFSNFTESQAECLVQRTPVRGFHVE KRQSSLVLCWQRKDLISISTWRC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 742 | 740 | 6.0E-218 | – | |
| PANTHER | 3 | 742 | 740 | 6.0E-218 | – | |
| MobiDBLite | 57 | 106 | 50 | - | – | |
| MobiDBLite | 57 | 103 | 47 | - | – | |
| ProSiteProfiles | 378 | 742 | 365 | 57.595 | ||
| Pfam | 388 | 742 | 355 | 2.8E-88 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0601800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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