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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0604100 |
| Transcript ID | LotjaGi1g1v0604100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sister chromatid cohesion protein DCC1; TAIR: AT2G44580.1 zinc ion binding protein; Swiss-Prot: sp|Q66I84|DCC1_DANRE Sister chromatid cohesion protein DCC1; TrEMBL-Plants: tr|I1KFJ4|I1KFJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0604100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:114888038..114891588) extracted from Lotus japonicus Gifu genome v1.2.
AAAAGACTTAATTAAATTAATATAAGCTATTTATATTTTATGGAAATAAAGAGAAGAAGAAAAAAACTGAGGCAGTCGAA ATGACAATCAATTTAGGCGCGAGAAGTGTTATCGCTGTTTCCCTATTTTAGTTTTACCGCCTCTCTCTCTTCACCGTCAG ATTCGAAATCGACGCAGCCAACGAAGAAACCCAAGAGCGAATCGTGTTCCGTAGCGTCACCGATATTCCAAGGTGAGTTC TCACTCATTTGATTTCAGGTCCCATTTTCATCAAACATATATCTTTGCTCAATTTCAGTTTGCAAATTTCATTCTCCCAT TTTTATCCCACTAAACAGGTCCTTTAGGGTTTGAGTGAAATTTGTCTAGGTCACTGATAAGTAAAATGAGTTTTCTGCAG AAAGTTGGGTGTCAAAATGAAAGCTAGTCGTACATTAAAGAAAAAGTATGCATTCACGCCCTAATTTAACCCACATCATG TGAGAGATTGGATAGTCAGTGTGATAGGAAAAAAAAGATATGAAGAAAAATGAAAATGAGATGAAAGGTAAAGTGGTTGT GAATGTATCAAAAAACCTTACATTGAATTCTACTAATACTATTCTTCTGAGTCAAACTGTAATTTGTCCTTTATTTTAGT TAAGCTGTATTTCTGTGACAATGACTTGAACTGTTCAGGTTGCATTTAGGAAAACAACTTAATTCTTATTCATGAGCTAT TTTTAGAAATTTATTGAAATAAGTTATGAATAAGCATAAGCTCTTTTTGATGAGCTATTATGAACAGCTTATGAAAACAA GTTCTAAACAAGTTATAGGTAGGCCATAAGATATTTACATAAGCTCTCCCAAACACTTGCATAAGCGCTTATGCTATAAG ATAAGCTCTTCCAAACGGGCCTTAGTAGTGGAGGAATTAAGAAGATGCAAACTTGTGTTCTTTCTTTCCATGACTTCTGG CATTATTTAGTCTGTGAGGAAGTCTTTTTTCTTTTTTTACTTTTTTTCTCTAATGCTTTATACTTAGTGAGGAGAAGAAA TGGAACCACCACTTCGAGCTTCAGGAGGAGCTGAAGTACTTAAAAATATGTCTCCTGGATCATCAATTTCTGTTGCATAT CACCCTCTTTTTGGACCTCATGATGATCTCATCTTTCTAGAGCTTGACGAGAAACTTCTCCCAGATCTTCTGCATGAAAG GTATGTAGTGATCAACATTCAGTTATTTGTAACGCTTTCCCTACCCTCTCCCTCCCCAACTTTTAACATGGTTTCTATTC CATTTTAGGGTGGTCTTAAGAGGACAGCCTGAAGAGGATGCATTTCTTTGTACTCCATCCAAAACATATGCTATGAAGTT TGTTGGAACTTCCAATTCTGTTTTGCTTGTACCACCAGCTAATCAATCAGAATATTGTGACAATCTACAAAAGAATGATA GTAATAGTTATGAGGAGAAAGTTGTTGCACCTGTAATCAAAGTTGTCCCTGGCAGTATGGAGCTTGTTGAGGTTGCGCCA AGACTTGATAAACTTAAATTGCTTCTTTCAGAGAACCCTTACAGGTTGGAGGAGAATGACATGGAAAATTTAGAAGAGAA TGAAGCACCTATAACTGGATTATATAGCTGGAATGATCTCATAGACAATATTCAAGCTAGTGATGAGGAATTAAGGTCTG GACTGCAGGCTATTTCAGCTGTGGAGATTAATGGGTTTTGGAGATTAGTAGATGAGAGTTACATGGACATGATTCTGGGA ATACTTTTGAGAAATTCAGTGTTGAATGACTGGTCATTTGATGCTCTTAATGAAGATGAAGTTATGACAACGCTGGAATC CGATGGATTTCCTAGAGTACTTGCAAGGCATTGTTTGCGTGTATATGGTGAGAAGGTAAATGATTTCATAAACAGCTGTG TCTGGAAGTTGGATGAGAAGAAGGTATGCATACATTATGCTAAAAAAATCCTTAAAGGAGGTAAGAGGAAGTTAGAGAGT TTTATGGATGAATGGAGGCAGATAACTCCAGATGGAATGCAGCCCACGTTTGATCTAGTGAAAGGAGAGGTATTGACAGA GAAAGTTGGAGTTGACACATGGGTTCACGCCTTCAGTGTCTCTTCGCTGCCTTCCACTCCAGCTGAACGTTTCTCCATTC TTTTCAGAGAGCGGCCGAAATGGGAATGGAAAGATCTGCAGCCATATATCAGGTTTAGGTCTCATAATTTTTGTACCTTA AATTGCTTCAATCTCTTCTGACATTTGAACTGATTCCTCTTTTTAAATGTTTCAGTGATCTAAGTGTACCGGGTCTTTCT TCAGAAGGTTTGCTACTCAAATACACTCGAAAGACACAGCCATCGCCTGATATGGAACCAGTTTTCAGTGCAAGATAGTA TGTACTTGCGCATCTCTCAGTCACTATTGCTTTACCCTCATTTGGACTGGCCACGTCCATAGTACTCGCATATATAAATT TTGAATTACCTTGTATTTCAACCTTTTCCAGTTATTTTCATGCACATTTCATTTAGATATCCATACTGGATAGCATAGTT TACAATTTAGGACAAGCAAAGCAGAAAGAACTGCTAGAATGATGAGCTTCGTGTCTTCCCTTGCATATTTGGAAATTACT GATGGCTTCTAAAATGTAGATCTACCCAAATATTGAGACTTGAAAGAAATTTATATGTGGTTAAGCTATTTGCTTTTGTA ACAGAACTGGATTGCCTAGTTCACTGCATCATAAATAGATAGTGCGTAATTGAGTAACTTATTTTGAATAGAATTTTTAT TTTCTAAAACATTAATCTGCATCAAAGATTGTTTTCACTTGTGGCGAGCTGCTTGTATTGGATTTTAAAAACAACCTAAA AAACAGAAAGAACTCTTGAGTTCAGTGCAGTAAACATGTATCTGACATGCCAATCTTTAAGCTGAGATGTATCTTCTGTT TGTAAATGTATGAGCTTTCTCTAAAAGAGATTGGTACAGCCTTGGATTGTGTTTGTTTGGATTTCAGTTTATTTTTCTTG CTGCACTTGTAAGTTGATTCTTTACACTTGTTATTTTTTGTGTGCTCATCCTACAGATAAAACCGTGAATTCCTGTTCTC TTTCGAGCTTACCTGGGAACAGCAGTACATTGGAATTCCCAGAAGTTAGTGTTGCTTATCTTTCTTGGATAGCTGATCAA TGTATGATATGTTTTTTGTCCAAAGGGAAGGGAACACTGCTAATGAATACTTATTCACTTGTCAAAATTGAAGAATTGTT TCATGCAGATTTAGTTACTTACACTAGAGATGTATTAGTATCTTTTCATGTCATATGACAGTTATGTGAAAATGTGTATC TCACTTTTCATAAGTATTTAGATAGTTCTACTTGTGTAATGTGTGATATGCATGTTTCAGGGATTTTATTTTTTAGGGTT AATTGTGTTTTATGATTTAACCTTAATGTTCAGTTGGCCCCAGTCTCACTTGGCAATTACATGACATCCACTTGGAGGTA CATGTCATCAAATGAAGGTCACCTAAGCCAA
CDS sequence (LotjaGi1g1v0604100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACCACCACTTCGAGCTTCAGGAGGAGCTGAAGTACTTAAAAATATGTCTCCTGGATCATCAATTTCTGTTGCATA TCACCCTCTTTTTGGACCTCATGATGATCTCATCTTTCTAGAGCTTGACGAGAAACTTCTCCCAGATCTTCTGCATGAAA GGGTGGTCTTAAGAGGACAGCCTGAAGAGGATGCATTTCTTTGTACTCCATCCAAAACATATGCTATGAAGTTTGTTGGA ACTTCCAATTCTGTTTTGCTTGTACCACCAGCTAATCAATCAGAATATTGTGACAATCTACAAAAGAATGATAGTAATAG TTATGAGGAGAAAGTTGTTGCACCTGTAATCAAAGTTGTCCCTGGCAGTATGGAGCTTGTTGAGGTTGCGCCAAGACTTG ATAAACTTAAATTGCTTCTTTCAGAGAACCCTTACAGGTTGGAGGAGAATGACATGGAAAATTTAGAAGAGAATGAAGCA CCTATAACTGGATTATATAGCTGGAATGATCTCATAGACAATATTCAAGCTAGTGATGAGGAATTAAGGTCTGGACTGCA GGCTATTTCAGCTGTGGAGATTAATGGGTTTTGGAGATTAGTAGATGAGAGTTACATGGACATGATTCTGGGAATACTTT TGAGAAATTCAGTGTTGAATGACTGGTCATTTGATGCTCTTAATGAAGATGAAGTTATGACAACGCTGGAATCCGATGGA TTTCCTAGAGTACTTGCAAGGCATTGTTTGCGTGTATATGGTGAGAAGGTAAATGATTTCATAAACAGCTGTGTCTGGAA GTTGGATGAGAAGAAGGTATGCATACATTATGCTAAAAAAATCCTTAAAGGAGGTAAGAGGAAGTTAGAGAGTTTTATGG ATGAATGGAGGCAGATAACTCCAGATGGAATGCAGCCCACGTTTGATCTAGTGAAAGGAGAGGTATTGACAGAGAAAGTT GGAGTTGACACATGGGTTCACGCCTTCAGTGTCTCTTCGCTGCCTTCCACTCCAGCTGAACGTTTCTCCATTCTTTTCAG AGAGCGGCCGAAATGGGAATGGAAAGATCTGCAGCCATATATCAGTGATCTAAGTGTACCGGGTCTTTCTTCAGAAGGTT TGCTACTCAAATACACTCGAAAGACACAGCCATCGCCTGATATGGAACCAGTTTTCAGTGCAAGATAA
Protein sequence (LotjaGi1g1v0604100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEPPLRASGGAEVLKNMSPGSSISVAYHPLFGPHDDLIFLELDEKLLPDLLHERVVLRGQPEEDAFLCTPSKTYAMKFVG TSNSVLLVPPANQSEYCDNLQKNDSNSYEEKVVAPVIKVVPGSMELVEVAPRLDKLKLLLSENPYRLEENDMENLEENEA PITGLYSWNDLIDNIQASDEELRSGLQAISAVEINGFWRLVDESYMDMILGILLRNSVLNDWSFDALNEDEVMTTLESDG FPRVLARHCLRVYGEKVNDFINSCVWKLDEKKVCIHYAKKILKGGKRKLESFMDEWRQITPDGMQPTFDLVKGEVLTEKV GVDTWVHAFSVSSLPSTPAERFSILFRERPKWEWKDLQPYISDLSVPGLSSEGLLLKYTRKTQPSPDMEPVFSAR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 395 | 386 | 9.5E-122 | ||
| Pfam | 39 | 361 | 323 | 1.1E-91 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Mitotic sister chromatid cohesion | The cell cycle process in which the sister chromatids of a replicated chromosome are joined along the entire length of the chromosome, from their formation in S phase through metaphase during a mitotic cell cycle. This cohesion cycle is critical for high fidelity chromosome transmission. | ||
| Cellular component | Ctf18 RFC-like complex | A heptameric complex related to replication factor C, which loads the DNA polymerase processivity factor proliferating cell nuclear antigen (PCNA) onto DNA and plays a vital role in chromosome cohesion. In Saccharomyces the subunits are known as Ctf18p, Rfc2p, Rfc3p, Rfc4p, Rfc5p, Dcc1p, and Ctf8p. |
Expression pattern of LotjaGi1g1v0604100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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