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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0605200 |
| Transcript ID | LotjaGi1g1v0605200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G16210.1 F-box family protein; Swiss-Prot: sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210; TrEMBL-Plants: tr|I3SJH1|I3SJH1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0605200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:115023801..115025655) extracted from Lotus japonicus Gifu genome v1.2.
GGAGGCTGCGTTTAGATTTGGTTTCGCTACTGCTCTGCCGCCGTCCTTTCACGGTGCCTTTCCTCCAGATATCGCCGCGT TCGACGCCTCTGTTCGAGTCGAGGTAAATCAGTTTCACTCTCTCCAATCTCCATTAACTGGTACACATTTTGAATACACA CAACACATCAATCAGAAACTGAAACAAACTTGTCATTCAATATTTATTAGAATTTCTGATTGAATTCATACATAGTGATG ATATACATACGAACATCACAATTTATCTTGATCATAACAAAAACCTTGGGATAATTCTATCTTAGTTAGTTATGTATCTC ACTTCCTGATAAGCCTACAAATTGTTGACTTTCTGTTTCTATATTTCCATATTATGTCTATAGTATTTTCTCAAGCATGG ACACTCAAACCCAGCATCTGCCTCAAGATTTGATAACTGGAATCCTGCTGAGATTGCCGGTCAAGTCTCTTGTACGCTTC AAGGCTGTGTGCAAGTTTTGGCGCTCTCTCATATCCGCTCCCAACTTTGCAATATCACATTTTCAACTTGCTACACCTAG ACTCGTGTTCGATACTGGTTTTGGTATTCAAACCATGGACTTAGATGGATCGCTTCACTCTAATCCTATCTCTCAAGCAA TAAATGTTGACTTTTTGCCTACCCGCTCTCGTACTCAAATTGTAGGTTCGTGTAGAGGCTTTCTGTTATTGGAATCTAAG AAAACACTTTACCTGTGGAATCCATCCACACGTGTCCACAAACCAATACCTTCATGTCCTCTTTACACGGATACTTATTT ATGTGGTTTTGGTTATGATTCATTAGAGGATGACTACTTGGTGGTTATAGTGTCCTTTCATCCAAGATCCTCACATGTGC AATTTTTCTCATTGAGAGCTAATAAGTGGATATTTAGTGAGGGTACTTATTTGCCTCTCTGGAACTACGCTAGTCAGCCA ATACCCGGGTTGCTCTTCAACGAAGCCATTCACTGGTTGGATCCTGATAGCTCAGATGCTATTATTGTCTTTGATTTAAT GGAAAAGAGACTTTTAGAGATACCCGTCCCAGATGATGTTGCCCAAAATCTTTCATCCTGTGATTTGTGGGTGTATGGAA GTTTTTTTGAGTCTATCAGATATGGAGTGTGATCCTAATACACTTGAAATATGGATTATGGAAAAATACAAAGTGCAGTC ATCTTGGACCAAGACTCTTGTTCTATCTATGTGTGACATATTCTACTTTTCCCCATTATATTCTACAAAAAATGGTGATA TATATTGTTATGGATAGTGCAGGAGGACTTGTGAAATATACTGATAAAGGAGAGCAGCTAGAGGAACGCAGTCTTCAACA TTCTCCAGAACACTCGGTGCCCATGTATACAGAATCAATCTTCTCACTCCCTGATGTCAGTGAGCAAAGCTAAGTAAGAT GATGACAATTACAAATGAGAATGGTGCTTAACCACCTTGTGAAATCTTGTGGCATTATCAAGTATTGAACTATCAGAAGT GATAGGTAGAATAATGAAACTACCAGTGAAGATAACAAGAGTCCGTATGAAATTATGTTTGAGGGCTCTGGTTATGATAT GCTTGTAGGAATTAAACGCACGTGAGCTTAGCATATTTTCCTTACTTCATCGTTATCTTTTTAACTTTTTATGTACTCTA TCTGTAATATTTTTTCCTTGTTATTACGAGTAATTCTCCATGATGCTCTTACTTCTTACTATGTTAATGTTGGTGAGTTC ATTGTTCTTTCCATTATTTTAGCTTGAAGAGAGACGGGTATTCATGTAGCACTGAACACTCTACTCATTCGCTAACCATG GACACCCAATACTCA
CDS sequence (LotjaGi1g1v0605200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACACTCAAACCCAGCATCTGCCTCAAGATTTGATAACTGGAATCCTGCTGAGATTGCCGGTCAAGTCTCTTGTACG CTTCAAGGCTGTGTGCAAGTTTTGGCGCTCTCTCATATCCGCTCCCAACTTTGCAATATCACATTTTCAACTTGCTACAC CTAGACTCGTGTTCGATACTGGTTTTGGTATTCAAACCATGGACTTAGATGGATCGCTTCACTCTAATCCTATCTCTCAA GCAATAAATGTTGACTTTTTGCCTACCCGCTCTCGTACTCAAATTGTAGGTTCGTGTAGAGGCTTTCTGTTATTGGAATC TAAGAAAACACTTTACCTGTGGAATCCATCCACACGTGTCCACAAACCAATACCTTCATGTCCTCTTTACACGGATACTT ATTTATGTGGTTTTGGTTATGATTCATTAGAGGATGACTACTTGGTGGTTATAGTGTCCTTTCATCCAAGATCCTCACAT GTGCAATTTTTCTCATTGAGAGCTAATAAGTGGATATTTAGTGAGGGTACTTATTTGCCTCTCTGGAACTACGCTAGTCA GCCAATACCCGGGTTGCTCTTCAACGAAGCCATTCACTGGTTGGATCCTGATAGCTCAGATGCTATTATTGTCTTTGATT TAATGGAAAAGAGACTTTTAGAGATACCCGTCCCAGATGATGTTGCCCAAAATCTTTCATCCTGTGATTTGTGGGTGTAT GGAAGTTTTTTTGAGTCTATCAGATATGGAGTGTGA
Protein sequence (LotjaGi1g1v0605200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDTQTQHLPQDLITGILLRLPVKSLVRFKAVCKFWRSLISAPNFAISHFQLATPRLVFDTGFGIQTMDLDGSLHSNPISQ AINVDFLPTRSRTQIVGSCRGFLLLESKKTLYLWNPSTRVHKPIPSCPLYTDTYLCGFGYDSLEDDYLVVIVSFHPRSSH VQFFSLRANKWIFSEGTYLPLWNYASQPIPGLLFNEAIHWLDPDSSDAIIVFDLMEKRLLEIPVPDDVAQNLSSCDLWVY GSFFESIRYGV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 2 | 49 | 48 | 9.895 | ||
| PANTHER | 3 | 243 | 241 | 7.4E-70 | – | |
| PANTHER | 3 | 243 | 241 | 7.4E-70 | – | |
| Gene3D | 6 | 44 | 39 | 1.2E-8 | – | |
| Pfam | 7 | 44 | 38 | 7.3E-7 | ||
| SUPERFAMILY | 7 | 62 | 56 | 1.03E-12 | ||
| SMART | 8 | 48 | 41 | 4.9E-7 | ||
| TIGRFAM | 97 | 240 | 144 | 2.4E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0605200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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