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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0606300 |
| Transcript ID | LotjaGi1g1v0606300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BURP domain protein RD22; TAIR: AT5G25610.1 BURP domain-containing protein; Swiss-Prot: sp|Q08298|RD22_ARATH BURP domain protein RD22; TrEMBL-Plants: tr|G7I4D4|G7I4D4_MEDTR Dehydration-responsive protein RD22; Found in the gene: LotjaGi1g1v0606300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:115111750..115114933) extracted from Lotus japonicus Gifu genome v1.2.
GTTCTTTTAATTTAAGTCTATTCTGGGGTCTATAAAATGCTGTGTAAGGACACTTTGGGATCTTCATTCTATCTCAGTTA GTTCCTCTTATTCAGTCCCTCTAGTTTCATTAAGCTATTTTCTTGGAGCTTTGGTTTCCAATATGGAGTTTCCTATGCTA TCCATCTTTATGTTACTCAATGTGAGCTTTAATTCTAAACTATATTGAAGCATGTGCCTATTATTTATTTTTTTCACCTT TCTTTAACATATATGATCTTCTCTTACTTATTTGGAAAGTATTGAGTAATGTCTTTGAGAGTTATGCTAATGAAGGTTTC TGTATTTAAACTACAGCTTGCACTGGTTGCTACCCAAGCTTCCTTAACTCCTGAACTTTACTGGAAGTCCAAGCTTCCTA CTACTCCAATGCCAAAAGCCATTACGGATCTTCTGCACTCTGGTGAGTACATTACATACATAGTTGTACTGGCTTAAGCC GAATTTCATATACGAAAATGTTGCTTTCACACTTCATATCATATAGAGAGAGATATTATCAAGTATGATATGATGTGATA GAAAAATAAAAAAGAGATAGGAACAAAAATGACATGGAAACTTGAAATTTTATTTTGACTTTGGGAGACGTAACTCTATC CAAGAATCAAGCTAGCACAAGAGGTATAGGAATTGTCTTTTAATATGTTAAGAGCTATCTTTGTCATATCTCTAGTTAAC ATGATACTTCTCAAGGCACCCCTCACGCCCAAGATTGAACTTTTGGAGTGTGGAATATGCATGAATTAATATTTGCAGTT GGTCATATATATAGGTTGTCACGACTAAACGGATGTAGGATAAGTTCTATTTAATACTATTAGAATTTGTGAGGCTAACT CTACTCAATTGTTAGCTCAAGAGGTGTTGTCTTCTTATATATAAGAGTTTTTGAACATTATTCAAAAAATGGGACAATGA GTTGAGAATGTGTTGTTCTGTATTATATTATAGAGTGAGAGTAGGAATGCCTAGAGAGCTTGTATTGGGCTAAGTGCATG AAATTTTCAATAGTTGAATTGACTTTTTAAAGGTAAAATCAATTCCTGAGTAAAATCATTTTGGTTTCACAATTGATTTT GATAAAAGAAATACTAATACTTAACATATAACTTATTTGAAGTTATTAGAAAAGAGGTGTTACTGGTTAGAAACCACAAT CTTTTCTTATTGAATTTAGTTCATGACTCAGTCTACAATCTTCTTATTACTGCTCTATCTGTTCGTGTTGTTCATCCCCA TCTTTTCAACAACACGTTGAACTGACAATAATTATCTGAATTGGCAGATTGGACAGAAGACAAAAGCACCTCTGTAGCTG TTGGAAAGGGAGGTGTAAATGTTGATGCAGGGAAAACAAAGCCCGGAGGCACTGCAGTTAACGTAGGAAAAGGAGGAGTA CATGTAAATGCAGGTAAAGGAAAACCAGGAGGCACTTCAGTGAACGTTGGAAAAGGAGGAGTAAACGTCCATGCCGGAAA AGGAAAAGGAAAAAGAAAGCCAGTGCATGTTAACGTGGGGCATTCTCCCTTTGATTACAATTACGCCGCCAGTGAGACCC AGTTACATGAAAATCCAAACGTAGCATTGTTCTTCTTAGAAAAGGACTTGCATCAGGGAACAAAATTGAACTTGCAATTC ACCAAGACCTCAAATGATGCTGCAGCCACATTCTTCTTGCCTCGCCAAGTTGCTGATTCGATCCCCTTTTCGTCGAACAA GGTGGATGACGTGCTGAACAAGTTTTCCTTGAAGCCGGGGTCAGAGGAGGCGGAAATTGTGAAGAACACCATCGCCGAGT GCGAAGAGCCTGGTGTAGTAGGAGAAGAAAAGCGCTGCGTGACTTCACTTGAGTCCATGGTTGATTTCACCACTTCCAAG CTCGGGAAAAATGTTGAGGCTGTTTCAACTGATGTGAACAAAGAAAAGGAGCTACAACAATATACCATAGCGCCAGGAGT TAAGAAATTGACAGAGGATAAAGCTGTTGTGTGCCACAAAGAGAATTATCCTTATGCTGTGTTTTTCTGTCACAAAACAA ATGCTGTTAAAGCTTACTTTGTGCCGTTGGAGGGTGTTGATGGAAGCAGAGTGAAAGCAGTAGCTGTGTGCCACACTGAC ACATCGAAATGGAATCCTAAGCATCTAGCCTTCCAAGTCCTCAAAGTAAAGCCTGGAACTGTCTCTGTCTGCCACTTCCT CCCTCAGGATCATGTTGTCTGGGTTCCTAAATAAGAACACCTGAGTTTAGTTTCACCCATATTCCCTGTCCTTCAATAAC ACTAGAACCTGCCTTATAAAGCTAGTCTTAAAATACTTGCATTTATATATGTAGCCACATGGTTCGAGCAAGCTACTACA GTACTGTATGTTTATGCATTATATATATGTACCAAACATGATACTATATACTAGCTATAACGAGACTTCTCTTTGTCCCT CTAATTTGATAACTATTAGTTTCCAGTTGAATGAGATGTCTAAGATTAAACTTTTTGAGTTTTCCACTACCATTTATAAG CACTTTATTGACCACATCTCTAACCACTGACCAATGTGAGACTCTAACGAGATATAATGACCACGTGTGGGTGCTGGGCG TGGGATTTCAATTTGAGAAGACAACTGTACTAGCTGACAAGTGATTTTTTTTTAAAAAGGACTATATACCTATTTTGTTC CTCTTTCACTGAAACCACTGCAATTTTAGAGAAGAAAGTCCTTTGATTGATTGAGTGAAAATGTGATCGCATCTTCTGGT GGGATCCATCTCCGTCGCAAAATATGGAGGCGCCACTTATTCAAATCCCTTCTTCTGTGTCGCGCCAGCGGCCCTCACTC ATCACAGCAGCCTCCTCCTCTTCTTCCCTGCTATAATCAATGGCATCCTCAATCACTATGTCGTGTTTTGTGTTGCCCAC ACTGCCACAACCGTCGAGATCAAACTTGCTTATGGCCTTCCCCTGAAGGTATTCAAAATCAGCTCCCTCATTTTGATTTT CAATGGTGTGGCTTTGATAAGGGTTTCTGGCTCTTAACGAAAATTGTGAGTGCTTGATATTTCTTGCTCGATGGCATTTG TATGCTGTGAACTGTAACGTGTTATTCACCTGTGTGATTCCAAATTTAAAAAATTAGAAATTTT
CDS sequence (LotjaGi1g1v0606300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTTCCTATGCTATCCATCTTTATGTTACTCAATCTTGCACTGGTTGCTACCCAAGCTTCCTTAACTCCTGAACT TTACTGGAAGTCCAAGCTTCCTACTACTCCAATGCCAAAAGCCATTACGGATCTTCTGCACTCTGATTGGACAGAAGACA AAAGCACCTCTGTAGCTGTTGGAAAGGGAGGTGTAAATGTTGATGCAGGGAAAACAAAGCCCGGAGGCACTGCAGTTAAC GTAGGAAAAGGAGGAGTACATGTAAATGCAGGTAAAGGAAAACCAGGAGGCACTTCAGTGAACGTTGGAAAAGGAGGAGT AAACGTCCATGCCGGAAAAGGAAAAGGAAAAAGAAAGCCAGTGCATGTTAACGTGGGGCATTCTCCCTTTGATTACAATT ACGCCGCCAGTGAGACCCAGTTACATGAAAATCCAAACGTAGCATTGTTCTTCTTAGAAAAGGACTTGCATCAGGGAACA AAATTGAACTTGCAATTCACCAAGACCTCAAATGATGCTGCAGCCACATTCTTCTTGCCTCGCCAAGTTGCTGATTCGAT CCCCTTTTCGTCGAACAAGGTGGATGACGTGCTGAACAAGTTTTCCTTGAAGCCGGGGTCAGAGGAGGCGGAAATTGTGA AGAACACCATCGCCGAGTGCGAAGAGCCTGGTGTAGTAGGAGAAGAAAAGCGCTGCGTGACTTCACTTGAGTCCATGGTT GATTTCACCACTTCCAAGCTCGGGAAAAATGTTGAGGCTGTTTCAACTGATGTGAACAAAGAAAAGGAGCTACAACAATA TACCATAGCGCCAGGAGTTAAGAAATTGACAGAGGATAAAGCTGTTGTGTGCCACAAAGAGAATTATCCTTATGCTGTGT TTTTCTGTCACAAAACAAATGCTGTTAAAGCTTACTTTGTGCCGTTGGAGGGTGTTGATGGAAGCAGAGTGAAAGCAGTA GCTGTGTGCCACACTGACACATCGAAATGGAATCCTAAGCATCTAGCCTTCCAAGTCCTCAAAGTAAAGCCTGGAACTGT CTCTGTCTGCCACTTCCTCCCTCAGGATCATGTTGTCTGGGTTCCTAAATAA
Protein sequence (LotjaGi1g1v0606300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEFPMLSIFMLLNLALVATQASLTPELYWKSKLPTTPMPKAITDLLHSDWTEDKSTSVAVGKGGVNVDAGKTKPGGTAVN VGKGGVHVNAGKGKPGGTSVNVGKGGVNVHAGKGKGKRKPVHVNVGHSPFDYNYAASETQLHENPNVALFFLEKDLHQGT KLNLQFTKTSNDAAATFFLPRQVADSIPFSSNKVDDVLNKFSLKPGSEEAEIVKNTIAECEEPGVVGEEKRCVTSLESMV DFTTSKLGKNVEAVSTDVNKEKELQQYTIAPGVKKLTEDKAVVCHKENYPYAVFFCHKTNAVKAYFVPLEGVDGSRVKAV AVCHTDTSKWNPKHLAFQVLKVKPGTVSVCHFLPQDHVVWVPK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 21 | 21 | - | – | |
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| PANTHER | 2 | 362 | 361 | 9.6E-147 | – | |
| PANTHER | 2 | 362 | 361 | 9.6E-147 | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| Phobius | 18 | 21 | 4 | - | – | |
| Phobius | 22 | 363 | 342 | - | – | |
| MobiDBLite | 76 | 122 | 47 | - | – | |
| SMART | 148 | 363 | 216 | 7.7E-101 | ||
| Pfam | 149 | 362 | 214 | 1.0E-87 | ||
| ProSiteProfiles | 150 | 363 | 214 | 92.154 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0606300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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