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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0608800 |
| Transcript ID | LotjaGi1g1v0608800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb-related transcription factor, putative; TAIR: AT4G18770.1 myb domain protein 98; Swiss-Prot: sp|Q9S7L2|MYB98_ARATH Transcription factor MYB98; TrEMBL-Plants: tr|A2Q4M1|A2Q4M1_MEDTR Homeodomain-related; Found in the gene: LotjaGi1g1v0608800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:115326200..115330247) extracted from Lotus japonicus Gifu genome v1.2.
AACTTTTCAATTCTCCGATGCTCTCTGTCTCCATTAGACTTCTCTTTCTCTTTACCTCTCTGTGAGTTTGCATGGAGTTA AATCCAAGCTTCCCAGTGATATTTCCCTACCTATCTAGGTCTTTTACAGAAAACCCTTGCCCAAAATTAGAGAGGCCCAG CATGGTTCCCTTGCAAAAAATTTCTACTTTTTCACAACCTCCACCAAGTAACACCAACTTGTACCCAAACAATTCCCACC ATTTTCAACATCATCCCTTTAATGGGGAAAACTATCACCCTGGTTTTGTTGTGGAAGTTCCTTCCTCCATCAACAAAATC TCAATGATCCCAACCCCTCATTCGATTGATTCATACCAGACTGCACTTATCAACGAGCCAATGAAAGACTTTTCCAACAC CTGCTACCCCATTGCATTTGCACAGAATAAAAGCAAAATTGAAGCCATGCATGGTTGCCTTAACAATGGCAAGGGAATCT TGGATTTTCCCCAAAAAATCCCTTTTCAGTCTGGGGAATATTCACAACCTCAGATGGGCCCTTCTCTATCACCATCACTA CTTTCACATGATTCGGCTCATATGAAGCCTAGGCTTCAAACTGAGGATTTAAGCATCATTGGAACTGCAAATTTCCAACA GGATATTGGTCAAAACGTTGTTGCTGGTGGTAGAATGCTACAGAAGAAGAGGCCAAAGAAGAGCAGTGAAATTCAGCACA AGGCAACTCCTAACATAATCAAAGGCCAATGGACTCCAAAGGAGGATGGGTAAGCAAAATCATTTTGGATCTTTCTCCCT CTCTCTTGAAGTTTTATTGTTTTTACTTGGGTCTCATTATTAAATTCTTTGGGGTTTCAAGAGATCTTTACAAAAATCTT CCCTTTGATTCACCTTCTCTCGAATGAGTTTTTTAATGTTCTATCCAATTCTCTCCCTGACATTATTAATACATGATGAT GATGATGATGATGATGATGATGATGAACATCTGATTTGGTTCTTCTGTTTTGGTAGGACTCTTATCGAATTGGTGAAACG CTTTGGGCTTAAGAAATGGTCTGAGATTGCTAAGCTACTGGGTGGCAGAATTGGAAAACAATGCAGAGAGAGATGGTACA ATCATCTCCGAGAAAACATTAAGGTTTCTTTCCTTTCAACTATATTAGTATTATTCTATCTCTGATCTCTCTCTGTCATA ATGTTTGGATTCTCTACATCTCTCTAGCAGAAATTCTTTATGTTTTTAACTATTTTTGAAACATATTTATTAATCTTAAC TATTTATGTTTGGATTAAGATTTTGCAGGAGAGAGATGTACAACTCTAGAAGATCTAAGTTCCTATCTCTCTCTCACACA CAAAAACACACACACACAAATAAAGTGATATAATTTTTGTCAAATTTTGTTTCTTTCTATTTACTTTTGTGACATTTAAA AAAAAAAATTAATTTTTTAACTCGTTTATAATCATATAAATAAAAATAAAAATTGTTAAATACGCTCTAATTCCCCAATT AACATTCAAATTTGGTTTTAGTCCAAACCATCTAAATTTATGGTCCTGGTATCTACTTTCATAGACAACTTTGGCTTCAC TCTCCACTTTATAATTTTATTTTATTCTTCATGAGTGATGTGACTAACAAATGATCGTGCCGCATTTTCCATAGGTCTAG AGTAACCATTTGTGACATATTATGCTTCCAAACTATATCGTATTTTTTATAAGCCAAAATATATTAAGGAAGCATTAGGT GTACTTCCACACTATATCAATGACTACCTCTATTTTATAAAATAAAAATTTACCTATGGAACTTATTATTTTTCCATCTA TAATAATATGTTTAATGAAAAGTTACTTCTATAATATATGTGGACTGGGCGAGGCCCACATCCCCTTTAGGGGGCTCGCC CGGAGACAGTCAGAAGCGTGGAAGAACGAACGCCTAGGGCAAGAGTGAAAGATTTCTTAAGATTAGGACATTATGTTAAA GTGATCGTCGGAGGGCGGTCACTTCATGTAAGGGAGTTGAGCTGAGTGTCGAGGCCTAGCTATCCCAATTAGCCTAGTAA TTAGGGGTTCCAATGTACTACCCCTATAAAAGGGAACTTTCACATTAATATAAGGGATCTTTTAACATTCATCTAAAAAT TATTAGGTTATTACCTCACCCTTGCTCTGCTAGACTTTGAGACCTATACCCTTTCTGAGTGTTCATGTCAAAACAATATG ACTTGAAACCAAAATAGGTTTTATGAGGTTACTCTGGATGTGGCCATGATGACATGGACCTTTGTTTGGCACATCACCCG TTAACAATGAGACATTGTAGAACGGGAACTGAAACTAAAATTATTTGAAAAATTAGGGACCAAAACCATCAATATTAGAT AGTTGGAACCAACACCAAATTTGTGTGTAAAATGAGAGACTAAAAACTTATTTAAGCTTATAAAAATCATGAATATATGT CAATTTAAATATATAATTAAAATCAAATTATCATATTTATATGAATTATACCAACAACAAAACATTACCGTTGACATTTA TTTCCCTTAGACACTTCATAAAGTTCCCGCAATACGACATGGTGTTTTTATCCCCTTCCCGTTTCTTTCACGAATTTTAA GAAATTCTTCATCATTGGAGTTTAAAGTATTTGAAACGTGTGTAAATGTTTTTTTCTACTTTTCGAATGCATCCTTAACT ATTTACTAATATTTGTTGGTTTCAAGAATTACTAAACCTACTTAATATATATATATATATATCTACATGTGGTACAATTC CACATCTATATTTTCATATGATGAGCAAGCATTTTTTTAAAGAAATTTGTTTGTACATTTGTCTCATGTATAGAAGCGAT GTATGATTCTTTTTATATTTCTTGCACAATGTCACCATCAATTATTATTAGTTTAAGAAATGTCCATGAAGGTTAATTCA AATGAACTCATGCTAAACCATATACATAGGAACATAGCATGTCTATTTAGTTAGTTAAGAAATACATTTTGAACGAGGAT ATGTTTATTTCTCAAGATTTTAAATATTGATTGTGAACAAAATTGATTTGGATTTTAAATTCACAAAAATACAGTTGATG TTGGCATATGCAATTACAAGATCAACTGCAATTGAGTTGCACATTGCAATTTAAAAGTTGGCCAGCCCAGTATCAATAAA TTGAAGATGAAAGTTTTCCTTTCATTTATGTCATTGATGGCGCACATATATGTGTGTGTAAATATATATATTGTAATATT TTCTGCATGCCAATGTAGAAAGACTCATGGAATGAAGAGGAAGACAAAATACTCATTGATGCTCACAAGGAAGTTGGGAA CAAGTGGGCAGAAATTGCAAGGAGATTGCCGGGGAGGACTGAGAACACTATCAAGAACCATTGGAATTCGACAAAGCGGC GTCTAAATGGCAAGAGACAAAAGAATAGGCGCAATGGTGGTGCTAAGGGAACATTGCTTCAGGACTATATTAAGGAACTC GTTGCAGCTGGACATGCTAAATTAAAGGAATCGAAGAAGTCCATGAAACAGGTGAATATGAGGAATGATTACAATAATCA TGACAGTGGTCACATTCATATTCATTATGAGAATTCAGAGGGTGACTTTAGCTTTGAAGATGTGGCTACTCAAGATGAAG CTGGTGGGTATGTGCCAATGATGTTCAATGCTGATGAAATAGCAAGGGGGTCTGCAGTGGAACATATCACAATGGATTAT GATGTTGCAACAGAGTTTGTGCCAGAGGTCCCAATGAAGAAGGAAATGGATATGATTGAGATGATCTATGGAAATCCTTA TAGTGGTTACATGGATTGACCCATGATTAGATGTGATTTTGTGCTGATCTATTCTCTTTCGTTGAACTGTGTTGTGTTTT CATCATGAACTTATTGTAATTTTATTTAGGTACATCGTGGTTGTTATTGGTTTGTATTGTGATGTTTGACTATATTTTAG CCATATGGTGTGGCTAAACTTATGTTTATCTTGCTTTTTATATTGGCC
CDS sequence (LotjaGi1g1v0608800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTAAATCCAAGCTTCCCAGTGATATTTCCCTACCTATCTAGGTCTTTTACAGAAAACCCTTGCCCAAAATTAGA GAGGCCCAGCATGGTTCCCTTGCAAAAAATTTCTACTTTTTCACAACCTCCACCAAGTAACACCAACTTGTACCCAAACA ATTCCCACCATTTTCAACATCATCCCTTTAATGGGGAAAACTATCACCCTGGTTTTGTTGTGGAAGTTCCTTCCTCCATC AACAAAATCTCAATGATCCCAACCCCTCATTCGATTGATTCATACCAGACTGCACTTATCAACGAGCCAATGAAAGACTT TTCCAACACCTGCTACCCCATTGCATTTGCACAGAATAAAAGCAAAATTGAAGCCATGCATGGTTGCCTTAACAATGGCA AGGGAATCTTGGATTTTCCCCAAAAAATCCCTTTTCAGTCTGGGGAATATTCACAACCTCAGATGGGCCCTTCTCTATCA CCATCACTACTTTCACATGATTCGGCTCATATGAAGCCTAGGCTTCAAACTGAGGATTTAAGCATCATTGGAACTGCAAA TTTCCAACAGGATATTGGTCAAAACGTTGTTGCTGGTGGTAGAATGCTACAGAAGAAGAGGCCAAAGAAGAGCAGTGAAA TTCAGCACAAGGCAACTCCTAACATAATCAAAGGCCAATGGACTCCAAAGGAGGATGGGACTCTTATCGAATTGGTGAAA CGCTTTGGGCTTAAGAAATGGTCTGAGATTGCTAAGCTACTGGGTGGCAGAATTGGAAAACAATGCAGAGAGAGATGGTA CAATCATCTCCGAGAAAACATTAAGAAAGACTCATGGAATGAAGAGGAAGACAAAATACTCATTGATGCTCACAAGGAAG TTGGGAACAAGTGGGCAGAAATTGCAAGGAGATTGCCGGGGAGGACTGAGAACACTATCAAGAACCATTGGAATTCGACA AAGCGGCGTCTAAATGGCAAGAGACAAAAGAATAGGCGCAATGGTGGTGCTAAGGGAACATTGCTTCAGGACTATATTAA GGAACTCGTTGCAGCTGGACATGCTAAATTAAAGGAATCGAAGAAGTCCATGAAACAGGTGAATATGAGGAATGATTACA ATAATCATGACAGTGGTCACATTCATATTCATTATGAGAATTCAGAGGGTGACTTTAGCTTTGAAGATGTGGCTACTCAA GATGAAGCTGGTGGGTATGTGCCAATGATGTTCAATGCTGATGAAATAGCAAGGGGGTCTGCAGTGGAACATATCACAAT GGATTATGATGTTGCAACAGAGTTTGTGCCAGAGGTCCCAATGAAGAAGGAAATGGATATGATTGAGATGATCTATGGAA ATCCTTATAGTGGTTACATGGATTGA
Protein sequence (LotjaGi1g1v0608800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELNPSFPVIFPYLSRSFTENPCPKLERPSMVPLQKISTFSQPPPSNTNLYPNNSHHFQHHPFNGENYHPGFVVEVPSSI NKISMIPTPHSIDSYQTALINEPMKDFSNTCYPIAFAQNKSKIEAMHGCLNNGKGILDFPQKIPFQSGEYSQPQMGPSLS PSLLSHDSAHMKPRLQTEDLSIIGTANFQQDIGQNVVAGGRMLQKKRPKKSSEIQHKATPNIIKGQWTPKEDGTLIELVK RFGLKKWSEIAKLLGGRIGKQCRERWYNHLRENIKKDSWNEEEDKILIDAHKEVGNKWAEIARRLPGRTENTIKNHWNST KRRLNGKRQKNRRNGGAKGTLLQDYIKELVAAGHAKLKESKKSMKQVNMRNDYNNHDSGHIHIHYENSEGDFSFEDVATQ DEAGGYVPMMFNADEIARGSAVEHITMDYDVATEFVPEVPMKKEMDMIEMIYGNPYSGYMD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 190 | 452 | 263 | 1.6E-85 | ||
| PANTHER | 190 | 452 | 263 | 1.6E-85 | – | |
| ProSiteProfiles | 219 | 274 | 56 | 26.169 | ||
| Gene3D | 221 | 276 | 56 | 2.2E-22 | – | |
| SUPERFAMILY | 221 | 317 | 97 | 1.91E-29 | ||
| SMART | 223 | 272 | 50 | 2.2E-14 | ||
| Pfam | 224 | 270 | 47 | 1.8E-16 | ||
| CDD | 227 | 270 | 44 | 4.33345E-15 | ||
| ProSiteProfiles | 275 | 325 | 51 | 20.115 | ||
| SMART | 275 | 323 | 49 | 1.5E-16 | ||
| Pfam | 276 | 319 | 44 | 3.8E-16 | ||
| Gene3D | 277 | 337 | 61 | 4.0E-18 | – | |
| CDD | 278 | 321 | 44 | 7.74795E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0608800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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