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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0611000 |
| Transcript ID | LotjaGi1g1v0611000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/LRR-repeat protein, putative; TAIR: AT5G40470.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9C5D2|FBL4_ARATH F-box/LRR-repeat protein 4; TrEMBL-Plants: tr|A0A072TZ55|A0A072TZ55_MEDTR F-box/LRR protein; Found in the gene: LotjaGi1g1v0611000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:115587358..115589594) extracted from Lotus japonicus Gifu genome v1.2.
CATTACTAATTGCTTAATCAAGAACCATCCCCATATTGCAATTTGCAACACAAATCAAATCCCAAACAATGGACGTGGCT TACACGTCCATGACACCTGCGACTGAGACTCCAAGTCTCCAATCAAGCAAGGTGCTCCTTTCAAACTCACTTTCTCTTCT CACCTAACCACCTTCCTCTCTCCTCAACAAAAACCCAACACACACACACACACACACACAGAATCATCATCATCATCAGC AACAACAGAACCACAACCTTAAACAAAACATGGACAACGTTCTCTGTGATGAACTCTTACAAGAAATTTTCCAAAAACTC CCTTCATCATCATCATCATCCTCATCCCTTGTTTCCAAGCGGTGGCTCCACCTCTTCCGTTCCTCCAGAACCACCCTCTC TCTCCGTATCACCCCTCACCTCTCTCTCACTCTCATCTCTTCCCTCACCTCTTTCCTCACCCACCACACTTCTCTCTCTT CCCTCTCTCTCACCCTCTCCCCTGACCCCACCACCACCACCACCTTCACCCTCTCACCTCTTCTCCTCTCCGCTGTTTCC TCTTGCTGTTCCCAGCTTCGTGCTCTCAGATTCTTAACCGGCCCTGTTTCTCTTCGTTCCATCAATTCGCTTGCCAATTC TTGTACCCATTTGAGCTCTCTGTGTATTAGTCTCTCCAGGCCAATTTTTCTCAGGTGGGTGTTGGAATTTCCCTGCTTGA AAGATTTGTCAATTGTTCTCTGCTCCGGTGATGAAAATGGAAGCTCCCATGAAGATGAGGTGAATGGGCAATTTGGGGTG TGGGAGAGTGATGATGTTGATGCTGAATTGGGGTTGGAGAGTCTCTGCTTTGTGGGTATCCGTGGTGATGATTGGGGTTT GGGTTGGTTGTGGAAAAGTTGCAGGAAGCTGAAGAAATTGAGGCTTCAAAGTTGTCAAGGGATTGGTGGGTCTTACTCTT GTTTTGTTCAGTGCCTGCAAGGTGTTCGAGAAATTGAGCTCAGAACTTGCAGGAGTGTGGTTGATGGGGTTCTGTTGAAA CTTGCAGAAAACTCTCACTCTTTGAATTCTCTGTTGGTTCATGATGGAGGTAGCAGGGAGGGTTTGCTTCACTTTTTTTC TCAGTGCAGGTCTAATCTGCAGAGGCTTGATCTTCGTTTACCTTTGGACCTTGATAACAATCATCTTTCGGCTGTGGCGG TTAATTTTAGAAACCTCTCGAGTCTCAGGCTTCAGAGTTGTTGTCTTGTCACTGGGGAAGGCTTGAAGGCGATAGCGATA GCGACGAGTAACGGGCTTGAAGAATTGGCGCTGATAAACTGCGATGTGGTTGAAAGAGAACCTGGATTGCTTGCCACTTT GGGGCAGCATTTGAGGCAATTGAGGAAACTAGACTTGTCACACAATGAAATGTTGCTTGATAAAGAGCTCATTTCGATGT TGGTTTCTTGCGTGAATTTGATTGATTTGAGGCTAAGAGGGTGTAAAGGAATCACTAGTGCTGCCATGGTTTCTATGCTC AGGAGCTGCAAACGCTTGGAAAATGTAGATATGATGCAGTGTTTGGGCATAGAATCTGAGGCTATTGAACTGTTTGTTAA GAACTCTTCTCGTTTGAGAAGGATGGAGGTTGAGGAAAGCAAGCTTTCTGATGCTGCAAAAATGTGGGCATCAAATAAAT TCATTGAAGTTGTTGTTTAATTGGCTTGATGGCTGTTGAAATAAGCAAGTGTACATTTTTAAAGTGACAAATAAACAGGT ATACATACATCACACTCCTGAATCGGTGAATTCTGATCACCGTATTTATTGTATTCATGTTTCTGTAATTTATGTTGGGG ATATGAATTTCTTCACTTCTCAGTGCATGTTCATATCAATTGTGTAACTTTTAATCCCATTTTCTGGTTTCAAATAAAGC ATGTGTCTTTATTGACCAAACTGAGATAATTCAACATAGACTCTACATGCCCATTCTGAGTTGCTTTTGTATGTGGTTCA ATATTGTGACAATTTGACAAGTATGTGTGCATACAATTGAACTATGATATGCTTCATTTAGGTGTACCACAAAAGGTTGA GGGATTGTGTGGTCCACCAAAATGTCTCAAAAAATGATTGTTGGACCCCACAAAATGTGGCGACACTAGTAATTTGTGGC AAGACACTTAGAATTTGCGGCGGTTTCTAACTGTCACAAACTGCAGTGTTATCTTTTTTCAAAAATATAAAGTGTCG
CDS sequence (LotjaGi1g1v0611000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAACGTTCTCTGTGATGAACTCTTACAAGAAATTTTCCAAAAACTCCCTTCATCATCATCATCATCCTCATCCCT TGTTTCCAAGCGGTGGCTCCACCTCTTCCGTTCCTCCAGAACCACCCTCTCTCTCCGTATCACCCCTCACCTCTCTCTCA CTCTCATCTCTTCCCTCACCTCTTTCCTCACCCACCACACTTCTCTCTCTTCCCTCTCTCTCACCCTCTCCCCTGACCCC ACCACCACCACCACCTTCACCCTCTCACCTCTTCTCCTCTCCGCTGTTTCCTCTTGCTGTTCCCAGCTTCGTGCTCTCAG ATTCTTAACCGGCCCTGTTTCTCTTCGTTCCATCAATTCGCTTGCCAATTCTTGTACCCATTTGAGCTCTCTGTGTATTA GTCTCTCCAGGCCAATTTTTCTCAGGTGGGTGTTGGAATTTCCCTGCTTGAAAGATTTGTCAATTGTTCTCTGCTCCGGT GATGAAAATGGAAGCTCCCATGAAGATGAGGTGAATGGGCAATTTGGGGTGTGGGAGAGTGATGATGTTGATGCTGAATT GGGGTTGGAGAGTCTCTGCTTTGTGGGTATCCGTGGTGATGATTGGGGTTTGGGTTGGTTGTGGAAAAGTTGCAGGAAGC TGAAGAAATTGAGGCTTCAAAGTTGTCAAGGGATTGGTGGGTCTTACTCTTGTTTTGTTCAGTGCCTGCAAGGTGTTCGA GAAATTGAGCTCAGAACTTGCAGGAGTGTGGTTGATGGGGTTCTGTTGAAACTTGCAGAAAACTCTCACTCTTTGAATTC TCTGTTGGTTCATGATGGAGGTAGCAGGGAGGGTTTGCTTCACTTTTTTTCTCAGTGCAGGTCTAATCTGCAGAGGCTTG ATCTTCGTTTACCTTTGGACCTTGATAACAATCATCTTTCGGCTGTGGCGGTTAATTTTAGAAACCTCTCGAGTCTCAGG CTTCAGAGTTGTTGTCTTGTCACTGGGGAAGGCTTGAAGGCGATAGCGATAGCGACGAGTAACGGGCTTGAAGAATTGGC GCTGATAAACTGCGATGTGGTTGAAAGAGAACCTGGATTGCTTGCCACTTTGGGGCAGCATTTGAGGCAATTGAGGAAAC TAGACTTGTCACACAATGAAATGTTGCTTGATAAAGAGCTCATTTCGATGTTGGTTTCTTGCGTGAATTTGATTGATTTG AGGCTAAGAGGGTGTAAAGGAATCACTAGTGCTGCCATGGTTTCTATGCTCAGGAGCTGCAAACGCTTGGAAAATGTAGA TATGATGCAGTGTTTGGGCATAGAATCTGAGGCTATTGAACTGTTTGTTAAGAACTCTTCTCGTTTGAGAAGGATGGAGG TTGAGGAAAGCAAGCTTTCTGATGCTGCAAAAATGTGGGCATCAAATAAATTCATTGAAGTTGTTGTTTAA
Protein sequence (LotjaGi1g1v0611000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDNVLCDELLQEIFQKLPSSSSSSSSLVSKRWLHLFRSSRTTLSLRITPHLSLTLISSLTSFLTHHTSLSSLSLTLSPDP TTTTTFTLSPLLLSAVSSCCSQLRALRFLTGPVSLRSINSLANSCTHLSSLCISLSRPIFLRWVLEFPCLKDLSIVLCSG DENGSSHEDEVNGQFGVWESDDVDAELGLESLCFVGIRGDDWGLGWLWKSCRKLKKLRLQSCQGIGGSYSCFVQCLQGVR EIELRTCRSVVDGVLLKLAENSHSLNSLLVHDGGSREGLLHFFSQCRSNLQRLDLRLPLDLDNNHLSAVAVNFRNLSSLR LQSCCLVTGEGLKAIAIATSNGLEELALINCDVVEREPGLLATLGQHLRQLRKLDLSHNEMLLDKELISMLVSCVNLIDL RLRGCKGITSAAMVSMLRSCKRLENVDMMQCLGIESEAIELFVKNSSRLRRMEVEESKLSDAAKMWASNKFIEVVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 3 | 162 | 160 | 1.3E-6 | ||
| PANTHER | 3 | 475 | 473 | 1.0E-187 | – | |
| PANTHER | 3 | 475 | 473 | 1.0E-187 | – | |
| Pfam | 5 | 40 | 36 | 1.1E-4 | ||
| SMART | 5 | 45 | 41 | 0.0044 | ||
| SMART | 100 | 124 | 25 | 570.0 | ||
| Gene3D | 178 | 356 | 179 | 4.5E-17 | ||
| SUPERFAMILY | 204 | 461 | 258 | 1.88E-22 | – | |
| SMART | 313 | 338 | 26 | 47.0 | ||
| Gene3D | 357 | 469 | 113 | 5.2E-15 | ||
| SMART | 368 | 393 | 26 | 280.0 | ||
| SMART | 394 | 419 | 26 | 2.0 | ||
| SMART | 420 | 445 | 26 | 33.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0611000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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