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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0614900 |
| Transcript ID | LotjaGi1g1v0614900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sieve element occlusion protein; TAIR: AT3G01680.1 sieve element occlusion amino-terminus protein; Swiss-Prot: sp|Q9SS87|SEOB_ARATH Protein SIEVE ELEMENT OCCLUSION B; TrEMBL-Plants: tr|E2FKI5|E2FKI5_SOYBN Sieve element occlusion m; Found in the gene: LotjaGi1g1v0614900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:116051213..116056213) extracted from Lotus japonicus Gifu genome v1.2.
TCCTATGTGGCAATTTGGGCCCACAAAAATTGAGTTAAGTCTCAAAATAAGTTCCTACCATTGAAGATGCTCTAAGATAA TGATATATGACTTACTCGAATGCTTGTGGAGGATACTTTATTAGACCAAAAAATTTTAGATAATGAGAGTCATGATGAGA AGTAGGTTTCATTGGCCTAAGCCAGTAAAGAATCTAGACTCTGAAGCTTTATTTTGTTTTGTCACTGCTTCATTGACTTG GGACATACTAAAGTGAAGATGTGGGGACAAAGGACAGAAAGAAACTAAGGACTTCCTTCCTCTTAACGTTCCAAGAACTT AATTATGCTGAAAGAAAGGAAGTTGATTCAGCTGGGCTTTATTCCTTTCTCTCTAGTATATGTAGGGGGAGCTATGACAT TGCTTTTAAAATTAGAACTACATCAGCCATCTCTTCTTTGCCCCAGACCTGAAGTTCTTTATCTTCATTTTATTTTCTGC AACTCACCATGAGTAGCATTAGCAAGTTGGGGGCAATGCAACAACTGATGAGAAGTGGAAAAACCATGCCTGCAAATGCA ATTTCTGATGACAGCATTTTGGTGAAGAAAATAGTTTCAGAGCATAATCCTGAGGGAATAGAATATGAAGTCAAGCCACT TCTCCATATTGTTGAGGACATTCTTAAACGTTCCACCTTTGTCTCTGAAGGCGCTCCAACGGTATGATGCAAATAGCTCA AAAACATAGTACATACATAAGCAATTGTAGTTTTGTTTTGATTAAAATGTAGATTTGGCTGAGATTACTATCTTGTGGTT AACATGTACTTTATTTCAGGGTGCTCTTGCACATGTTGACCATGTCGAAGACAGAAATCACTTTCCTGCCCACTCAAGCA TGTTGGAGGCTCTGTCTGTAAAGATTGATCGCATTTCCTGTGAGGTAATAGAAAAATAACATAGAACATAGGTAATCTAG ACCAGAATATTCACATCTTTGCTCTGTCTAATTACAGAAACATTGTGATACTTCATACCTTTGGACCAGCTGATCTTCTC AATCTAATCATTGAAACATTGTGATACCACAACTGATAACATGGCCTGCTATAACTTATAAAAAAGTTAACATATTTAGA GATATCGAGTTCTGAATTTGTAAAAAGGATATCAGAATATCAACTGCATGCTTACTTTTCCATCAATATAACAAATTAAC AATATCAATGCCAACATGAAATTTCAGATTTCGTACAAGACTCTTAGTGGTGTAGATGCACACTCCACATCAGTTGCAAT ATTTGACATGCTTACAATCTACCAGTGGGATGTGAAGTTGGTGCTGGCTTTAGCTTCTTTTGCTCTGACCTACGGTGAAT TCTGGCTGCTTGCCAATATTCACGATACAAACCAACTCGCCAAATCAATGGCAATTTTGAAGCAATTGCCTGGTATCATG GAGCATGTGAGCTCGCTGAAACCACGGTTTGATACCCTTAATGATCTGATTAGTGTGATATTAGATGTGACCAGGTGCGT TGTAGAGTTCAATGATCTGCCAACTAAATACATCACACAAGACATATCAGCCTATACCACTGCCTATAATCATATCCCTA TTGCTGCTTACTGGTGTGTTAGAAGTATTGTGGCTTGCGCTGCTCAGATCACTAGCCTCACTACACTTGGTTATGAGTAT GTTTCTCCAGTCATTTCTCAAAATTTTCATGTTTGTAATTGTAACACACATGCACTAAAGGTCAGAATTTTAAAATTCAT GAATAAGTTACAGAGTATCATTACACCTAGCTGGTAAATGGCAGGGATTAATGTGGCACACAAATAATATATCAACCTTG TTTCAGGATCTTCACGTCCACTGATGCATGGGAGCTTTCCACGTTGGCTTTCAAGCTCAGAAACATAGTAGATCATCTCA GGAAACTACTGGGAAGCTGCCACAAACACATTGGTAAGCCACTTAAATATATATTCAAATGGAATATATGTATGTGTATG TGCACCTATGTATGTAATGTGAATATTAGTAGAGCTAGAGAGGTAAGATGAACTGATCTTGACCATTTAATTATATATTG ATAGTCAAGATTGATTTAATCAAATATGATATTGATTATTCATTTATGCTGTATAGTCACGATTAATGCCACTCATGAGA GAATGTTCATGCTCTTACCAGTTATGCTTTCTAAATATATTGACACAGAGATAGATAGATATACTGAAATGCTCTGAATA ATTTAAGATCACCATTCAATGTAGAGAAAAGGATGGATGTTGAAGCTTACGATATGCTACGTGATTTATTTTCGAGAGCC CACGTTGACAACATGAAGGTTCTCAAGGCTCTGATTTATGCACAGGAAGATATTCTGCCTCTATATGATGGTGTTTCCAA GAAAAGGGTTTGATTTTCTGACATAGTAAACCTACATGATGTATTACTATTATTATAAGTTAGTGATGCTAATGCTGATA CAATTCATGCAAACAAACAGGCTAGCCTGGAGCCGCTGAGAAGGAAGAATGTTTTACTTCTATTTTCAGGCCTGGAGTTC TCCACTGATGAGTTTCTGATTCTTGAACAAATCTACAATGAATCAAAAGTTCATACACCAAGAATGGAGAGTAGATATGA GTTAGTTTGGATCCCAATTGTGGATCCAAACTCTGAATGGACAGCACAAAAGGAAAGTCAGTTTGAGGGCCTGCGAGTGA CCTCGCCATGGTACTCTGTGCATCATCCTTCATTGATAAGCAAGGCTGTCATCTGGTTTGTCCAGAGTGAATGGAAGTAC AAGAATAAGCCTATTATTGTGGTTTTGGACCCTCAAGGGAGGGTTTCTTGCCCTAATGCTATTCACATGATGTGGATTTG GGGAAGCGCTGCCTTTCCGTTTACAAGTGCTAGAGAAGAAGCTCTGTGGAAGGAAGAGACCTGGAGACTTGAATTGTTAG TGAATGGCATTGACTCAGAAATATTGAACTGGGTAATCATCTCATCTGTTCTAGCAATCAAAGACTTACTTAATTATGTA TTTCAGTATGCTCTAACCACTATTTAGTTACCATATTTAGACTAGCCTCAACCCAAAAGCACAGTGCAGCTATTTTAGAT AATTGTGCAGTTAAAACCATCACATATGGACCATTTAGTTCACATGACTAGATAGGATACCTCAAATTACATAATAGAAT GACACACAATAGATCTTCAAGAGTCTGCATTTCCTTAAGCCCAACCCCCACCCCCCCATTTCCATTTAAAATGAGTAGAT ACCTCTCCCTCTCAATCTCTCCTTCTATTGATAGGTAACATGCCTGATTTCTAATAGGCACCTAACATATTCACATCTGT CCCAGTTTTCCACAATACAAAGAATCACTGTGATGTAATTACATCTTGGACTGCAGCCACATGATTAAGGATATTAACCT CGCACTTTATTAGATACATATCAAAATACATAGGATTTGCACCTCCATATGCCCATAGGTCCTAGTTTCTCTCAAGATGA CTAGATACCTCTCTCACTCAATTTCTTCTATATATAGGCAACAAGTCTTTTTCTTCTAAATAGCCAAGCAGACCAAACTA ACTATCTCACTACCAGACACCTAATTAACAGACACTCCCCCATTCACATTTGTCCACAAATTTTCAAAATTTAAAGAATC ATCACTTTATCACAATCGTGCCAGCAACCATAATTTAAAAGCAGAGGCAATTTCACATGCCCAAGGTTTTAAATTACCGT GATTGCAGCCATTGATCCACAACATCGTGATTTTGTAGCATGTTTGGATCGACTTCTCTTACACGAGAATTGATATCAAT TCTGAAACTCAGAAGCTACCGTCTTCGGAATCAACCGTATAAGGGTTTCCAAGTAATCTCTACAGCTGCAATTGTGGTCA AATCAATCCCAATTGTCCATAATTCCCCCCAATGTATCATAATCACCACCATCAACTGCAAATTTAAAAAGTTGTTCATT CCATTTTGCAAACTAATCAATTCTAAAATTTCAATTTCATGAACAGATCAAGGAAGGAAAGTACATTTTCCTATACGGCG GCGACGACGCCGAATGGGTGAAAAAATTCGTGAAAGAAGCCCGGAGAGTAGCACAGGCAACCCAAATCCCCTTAGAAATG GTCTACGTCGGAAAAAGCAACAAACGGGAACAAGTCCAGAAGGTGATCGAAACCATCGCCCGCGAGAAGCTCAACACACA CTGCTGGTCAGAACAAAGCATGATCTGGTTCTTCTGGACCCGTCTCCAAAGCATGCTGTTCTCCAAGATCCAGCTGAAGC AATCAGACACAACGCAACACGACCACGTGATGCAGGAGATCAAGAAGCTTCTCAGCTACGACAAGCTCGGAGGGTGGATC GTGCTGGCGAGAGGGTCGCAGATTGTGGTGAACGGGCACGCGTCTACGGGGTTGCAGACGCTGGTGGAGTATGACTTGAT GTGGAAGGATCCGGCGGAGAAGGAGGGGTTTGAGGCGGCGTTTAAGGACCATTATGGGAAGCTGCACACGGTGGCGAACC CGTGTTGTAGATTTGAATTCTCGCATTCGATGGGGAGGATACCGGAGAGGCTCACGTGCCCGGAGTGCCACCGCCATATG CATGTGTTGACGACGTTTCAGTGCTGCCATGATGAGGATATTGAGCAGGATTTTTTTGTTAGCAGTGTTGCTCCTCCTAC TTCCACCATTTGAGTTGGGTTGCTCCTTTTCTATGCTGCTGCTTCCACCCTGCAATTGTGTTTTTCTTATCATAATAAAA TGTTGAAGAGGTTGGTTGAATTATCATGTAACTTGTTTTTCTGTATTTGGCTCTTGTCTATGAAAGCTATTGGCATTAAG ATTGTGGATATGCCTAGTCTTTTGAATCATCATCAATAAAGATTTTTTTTTTTTTGAAAATATCAATTAAAGTTACACCT AATACAAAATTGAGTTAAAGTTTTTAATCTCCATGGGTGAG
CDS sequence (LotjaGi1g1v0614900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTAGCATTAGCAAGTTGGGGGCAATGCAACAACTGATGAGAAGTGGAAAAACCATGCCTGCAAATGCAATTTCTGA TGACAGCATTTTGGTGAAGAAAATAGTTTCAGAGCATAATCCTGAGGGAATAGAATATGAAGTCAAGCCACTTCTCCATA TTGTTGAGGACATTCTTAAACGTTCCACCTTTGTCTCTGAAGGCGCTCCAACGGGTGCTCTTGCACATGTTGACCATGTC GAAGACAGAAATCACTTTCCTGCCCACTCAAGCATGTTGGAGGCTCTGTCTGTAAAGATTGATCGCATTTCCTGTGAGAT TTCGTACAAGACTCTTAGTGGTGTAGATGCACACTCCACATCAGTTGCAATATTTGACATGCTTACAATCTACCAGTGGG ATGTGAAGTTGGTGCTGGCTTTAGCTTCTTTTGCTCTGACCTACGGTGAATTCTGGCTGCTTGCCAATATTCACGATACA AACCAACTCGCCAAATCAATGGCAATTTTGAAGCAATTGCCTGGTATCATGGAGCATGTGAGCTCGCTGAAACCACGGTT TGATACCCTTAATGATCTGATTAGTGTGATATTAGATGTGACCAGGTGCGTTGTAGAGTTCAATGATCTGCCAACTAAAT ACATCACACAAGACATATCAGCCTATACCACTGCCTATAATCATATCCCTATTGCTGCTTACTGGTGTGTTAGAAGTATT GTGGCTTGCGCTGCTCAGATCACTAGCCTCACTACACTTGGTTATGAGATCTTCACGTCCACTGATGCATGGGAGCTTTC CACGTTGGCTTTCAAGCTCAGAAACATAGTAGATCATCTCAGGAAACTACTGGGAAGCTGCCACAAACACATTGAGAAAA GGATGGATGTTGAAGCTTACGATATGCTACGTGATTTATTTTCGAGAGCCCACGTTGACAACATGAAGGTTCTCAAGGCT CTGATTTATGCACAGGAAGATATTCTGCCTCTATATGATGGTGTTTCCAAGAAAAGGGCTAGCCTGGAGCCGCTGAGAAG GAAGAATGTTTTACTTCTATTTTCAGGCCTGGAGTTCTCCACTGATGAGTTTCTGATTCTTGAACAAATCTACAATGAAT CAAAAGTTCATACACCAAGAATGGAGAGTAGATATGAGTTAGTTTGGATCCCAATTGTGGATCCAAACTCTGAATGGACA GCACAAAAGGAAAGTCAGTTTGAGGGCCTGCGAGTGACCTCGCCATGGTACTCTGTGCATCATCCTTCATTGATAAGCAA GGCTGTCATCTGGTTTGTCCAGAGTGAATGGAAGTACAAGAATAAGCCTATTATTGTGGTTTTGGACCCTCAAGGGAGGG TTTCTTGCCCTAATGCTATTCACATGATGTGGATTTGGGGAAGCGCTGCCTTTCCGTTTACAAGTGCTAGAGAAGAAGCT CTGTGGAAGGAAGAGACCTGGAGACTTGAATTGTTAGTGAATGGCATTGACTCAGAAATATTGAACTGGATCAAGGAAGG AAAGTACATTTTCCTATACGGCGGCGACGACGCCGAATGGGTGAAAAAATTCGTGAAAGAAGCCCGGAGAGTAGCACAGG CAACCCAAATCCCCTTAGAAATGGTCTACGTCGGAAAAAGCAACAAACGGGAACAAGTCCAGAAGGTGATCGAAACCATC GCCCGCGAGAAGCTCAACACACACTGCTGGTCAGAACAAAGCATGATCTGGTTCTTCTGGACCCGTCTCCAAAGCATGCT GTTCTCCAAGATCCAGCTGAAGCAATCAGACACAACGCAACACGACCACGTGATGCAGGAGATCAAGAAGCTTCTCAGCT ACGACAAGCTCGGAGGGTGGATCGTGCTGGCGAGAGGGTCGCAGATTGTGGTGAACGGGCACGCGTCTACGGGGTTGCAG ACGCTGGTGGAGTATGACTTGATGTGGAAGGATCCGGCGGAGAAGGAGGGGTTTGAGGCGGCGTTTAAGGACCATTATGG GAAGCTGCACACGGTGGCGAACCCGTGTTGTAGATTTGAATTCTCGCATTCGATGGGGAGGATACCGGAGAGGCTCACGT GCCCGGAGTGCCACCGCCATATGCATGTGTTGACGACGTTTCAGTGCTGCCATGATGAGGATATTGAGCAGGATTTTTTT GTTAGCAGTGTTGCTCCTCCTACTTCCACCATTTGA
Protein sequence (LotjaGi1g1v0614900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSISKLGAMQQLMRSGKTMPANAISDDSILVKKIVSEHNPEGIEYEVKPLLHIVEDILKRSTFVSEGAPTGALAHVDHV EDRNHFPAHSSMLEALSVKIDRISCEISYKTLSGVDAHSTSVAIFDMLTIYQWDVKLVLALASFALTYGEFWLLANIHDT NQLAKSMAILKQLPGIMEHVSSLKPRFDTLNDLISVILDVTRCVVEFNDLPTKYITQDISAYTTAYNHIPIAAYWCVRSI VACAAQITSLTTLGYEIFTSTDAWELSTLAFKLRNIVDHLRKLLGSCHKHIEKRMDVEAYDMLRDLFSRAHVDNMKVLKA LIYAQEDILPLYDGVSKKRASLEPLRRKNVLLLFSGLEFSTDEFLILEQIYNESKVHTPRMESRYELVWIPIVDPNSEWT AQKESQFEGLRVTSPWYSVHHPSLISKAVIWFVQSEWKYKNKPIIVVLDPQGRVSCPNAIHMMWIWGSAAFPFTSAREEA LWKEETWRLELLVNGIDSEILNWIKEGKYIFLYGGDDAEWVKKFVKEARRVAQATQIPLEMVYVGKSNKREQVQKVIETI AREKLNTHCWSEQSMIWFFWTRLQSMLFSKIQLKQSDTTQHDHVMQEIKKLLSYDKLGGWIVLARGSQIVVNGHASTGLQ TLVEYDLMWKDPAEKEGFEAAFKDHYGKLHTVANPCCRFEFSHSMGRIPERLTCPECHRHMHVLTTFQCCHDEDIEQDFF VSSVAPPTSTI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 136 | 136 | - | – | |
| PANTHER | 5 | 711 | 707 | 0.0 | – | |
| PANTHER | 5 | 711 | 707 | 0.0 | ||
| Pfam | 26 | 311 | 286 | 3.4E-112 | ||
| Phobius | 137 | 155 | 19 | - | – | |
| Phobius | 156 | 731 | 576 | - | – | |
| Pfam | 477 | 711 | 235 | 6.9E-94 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Phloem development | The formation of the principal food-conducting tissue of a vascular plant. |
Expression pattern of LotjaGi1g1v0614900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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