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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0616200 |
| Transcript ID | LotjaGi1g1v0616200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar-processing enzyme; TAIR: AT4G32940.1 gamma vacuolar processing enzyme; Swiss-Prot: sp|P49044|VPE_VICSA Vacuolar-processing enzyme; TrEMBL-Plants: tr|A0A151S655|A0A151S655_CAJCA Vacuolar-processing enzyme; Found in the gene: LotjaGi1g1v0616200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:116293195..116297343) extracted from Lotus japonicus Gifu genome v1.2.
ATTGCAATAGCAATTTAATTAGCAAAACAAAACAAAAATCACACGTCACGTCCTATGAGCTACTATATATACACTGCATG CTGAGTCGATTATGTACACTGAGAGCTCTTGAAAACATTTATCACTCTAAGTATTAGTATTGTTTCATCTACTAATTGTT CACTCTTCTCCCACAAATCACACACACACACACACACAAAATGAATCGCTGGATCAGCTTCTTGATCCCAGTGATAGCAT TACTCTGGATGAGTATGGCAGTGACTGGTGATCACCAGTCATCAACAGAGGGAAAGAGATGGGCTTTGCTGGTTGCTGGT TCTTATGGGTACGGCAACTACAGGCACCAAGCTGATGTTTGCCATGCCTACCAGATTCTGAAGAAAGGTGGTCTTCCAGA TGAAAACATCATTGTTTTCATGTATGATGACATTGCCAACAATAAAGAAAACAAATGGCCTGGCAAAATATTTAACAAAC GAAATGGTCCAAATGTTTATGAAGGGGTTCCCAAGGTATATTATCCACATATACATACATATTTTGCTGGTTGCTGGTTC TAATGGGCACTATTTTATGTATATGTATGATATAACCTAACCAAGGACAAAATAAAATTTGTTTAGGATTATACTGGAGA CGCGGTGAGTGTAAAAAACTTCTTCGCTGTGCTTAGTGGCAACAAAAGTGCTACCACCGGAGGTAGTGGGAAGGTTTTGG ACAGTGGTCCAGACGACATCGTTTTCATTTACTACACGGACCACGGCAATACCGGCATAATAGGTAAGAAACTCATAGCC GTGCGATTTTGCATTTCGCGTTAAGAACAAAATAATTAAGTCTTTTGATTATATAAACCTTTATTTTATATTTTTTAATA CTTTTTCCCTCTATAATTATTTGAGCAGGCATGCTAGATGATATGATTACAGCCGACGAGCTTGTAGATGCGTTGAAGAA GAAACATGCCGCAAATTCATATAAAAAGATGGTGAGTACGTAGATGTATTTTATATATTTATGTTATAATTTATTAAATT AATGTCAAGTTATTTTCTTTACTTTTCATTTTTAATAAATAATGATATTTCATGAAATTAATTATATATATTTGAAGGTG ATATACTTGGAAGCGTGTGAATCTGGGAGCATGTTTGAAGGACTTCTTCCAGATGACATAAACATCTATGCAACCACTGC TGCAAATGCAGAGGAAGATAGTTGGGCATGTTACTGCTATGAAGATTATAACGCTTGTTTGGGAGACCTCTACAGCGTTT CATGGATGGAAGACAGGTATATATAAATATATATATATATATATATATATCCATCTGTATTATATTGTATATGGTTTAAT TTAATCATCGTTATCTTAATTTTTTTTATTAGAGACATGCAATTAATATTAATTGTCTTGATTGTGGAACAGTGACAAGC ATGATTCGACGAAAGAAACTCTGGAAAAACAATATGAACATGTAAGTCAAAACTTAATTAATTACTTCATCGATCTGGTA TGTATAGATAATAACCTTGACTGAACATATATAATGAAAATTGTATATATAGGTTCGCAAGAGAACAATTAAGCCTCCAA AAATGCATTCTCACGTGATGCAATATGGAGACATGAGGATGAGAAGTGATTATCTTGCGACATACCTTGGTTCAAACCGT GATGAAGTTTATCAAAACTTCAATCTCACCACCAACAATAATGCAATTCCATATCAACCATCCAGTGATCCATCAAGACT TATTAGCCAACGAGATGCTAAATTATTTTATCTAAGGCATAAGGTAAATTTAATTTCCTGGTCATTCTATATCAATTAAT GGGAAGATATTTTAATCAACTATTTAATTTGTTTCTTAATGTTGTTTCAGTTGGAAAAGGCTATGGACGGTTCTAATGAG AAGTTACAAGCCCAGAAAGAGTTAGATGCTGAAATGGCTCACAGGAAGCATGTGGATAAGAGTGTCAATCTCATAGGGAA TCTCTTGTTTGGAGAAGACAAAAGCTCCAACACCATGGTTCATGTTCGTCCGGCAGGGCAGCCTCTTGTTGATGACTGGG AATGTTTTAAGACGCTGGTAACTAAGCATAATTAACAAATCTAATTCCTCATTACCACCGGTCGGCTTGAAAGAAAACTT CAGCTTCAGCGGACTCCGATGCAAATTCTAACTGTTTGCTTTATATTTTTTTCACGCAGATGAAAACTTATGAGAGGCAT TGCGGAGGCTTATCAAGCTATGGAAGGAAGTACACAAGGGCCTTTGCCAACATGTGCAATGCTGGAATTTCTGAGAAGCA ATTGATTGCAGCATCATTGCTAGCTTGTCCTGGGAAAAACCACGCTTCTTAAATTCCTCCTCAGGAGAAGAATGTAACAA CCAATATATTAATAAATTCCTCTTCAGGAAAAGAAAGTAATATATATTAATAAATTCGTCCACAGGATGTAATAGCTAAT ATATTAATAAATCAACTGTTTTTCAATTCTACAAAATTCATTATCCTCGTTCTTAGTAAATCTTCATGTATATCAGCTAA ATTAAGGAATCATAGACTTATCTTTCATTCTTTAATTGAATATGTCTTGTGCGCTCCTCAACTTAGGAGAAATTCTAACA TACACCACCAAATATATAGATGGTTTAGCAGTATACTGAATGTATTGGTGTATAATTATATATACGTAATAGAGGTTGTA ATTGTTTTTCTTGTTAAGCCGAAAACTTCTAAATTAATTGACCAGAAGGAATACTCAAGAAACACAACACAAGAGTCTGT ACAAACAAAAACATAAACCAAATACCACAAAGACAGCAACTAGAAGAAAATAAAAGCAAAGAAGCCAAAACAGAACAAGT GTCCCTTTCAAAAAAAGGCCACAAGAGAAAAGAAGATCCTCCTGATTATAACCTGCCAACAACCTATACTATATTCTTCA ATGAAAAACTCCAACCTCTTTAAGCATTAACATCACCTCTATAAACCAATTACCTAGGCCTGTGAACTTTGAGAAACATA GACCTGATGCGCTAAACTTGGACAGCATGAAACTCACACAACCTAAACCAACTGAATCAGATAACCTACAACTGATAATC TTTGACAGATCATACCACTGAATTGACCAAACAAATTAAGCAGCCACCAAAAGAAATAAAGAATTGAAATTGATAGCTGG TATATTGTAGAATAGGTTCAAGCCCCAACCCTGTCTTCATCCTGGGATTGGAAGACGTTTCTCAAACATGACAAGTTTTG TTACGAACCAATGTCACCAACAATGGGGCAAAGATTGCTGTCACCCCAGTTAGAAGAACACCTATAACAATCTTAAGTTG TATCCTTGAGGAACAACTTGTTTCATTTCCACACAAGTTTGTAGGGTGGTAGCAAGTAGCAACCACCTCTTGGAAATAAG ATGGGTAACTGCAGATATCTTGTAAATACAACATAGTTGCTTAAAGGTTGCAAAATTATGGTTCGCTTACTCCTGGGCTT AATTTTCTTTTCCACTTCTCTTAAATAATTGCTTCAGGGTGGTCAGGACTATCAGGTACTGTAAATCATTGTTAGGGATG GAACTTTGGTAGGAAAAGTCCAATGAAGAAAAGGGAAAGAAAACATAAAAAGACCTTCTGCATATTTTTGTCTACTATTG TTCCCTCAAAATATTATCTATAAATAACCAAAGTATAACAGTAACATAAGTAATAATAAAATAAAGTGATGAACACACCT TTGCATATCAAGGCCATTCTCGAATAATATCTACATATGCTCTGCCTGCATTTAACATAAAGGTCCTTACATCATTTCAC TAATTTCTTCTCCTCATTTTCCAATTAGTATCTCTTGTTTTGACAAGAAATGAACTATAAACAACAACCAATATGGAGAT AGTATCAGATTATATACCTATTCATCCACAGTAAAGACCTGAGGACCACCCAGTTCATAAACCTTTCCCATACTATAGTA GTGTCAATGTGACATCATCCTTCAAAGTAATTGCATTTGTTAGGAACTCTGGTACTAATGCAATTTCAAGTAAGTAAAGT GTGAAAAGTCCACCAATGACATTTAGTAGCAAGTGATGCTATCAAACAATGAAGGACCTAGGCTATCTG
CDS sequence (LotjaGi1g1v0616200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCGCTGGATCAGCTTCTTGATCCCAGTGATAGCATTACTCTGGATGAGTATGGCAGTGACTGGTGATCACCAGTC ATCAACAGAGGGAAAGAGATGGGCTTTGCTGGTTGCTGGTTCTTATGGGTACGGCAACTACAGGCACCAAGCTGATGTTT GCCATGCCTACCAGATTCTGAAGAAAGGTGGTCTTCCAGATGAAAACATCATTGTTTTCATGTATGATGACATTGCCAAC AATAAAGAAAACAAATGGCCTGGCAAAATATTTAACAAACGAAATGGTCCAAATGTTTATGAAGGGGTTCCCAAGGATTA TACTGGAGACGCGGTGAGTGTAAAAAACTTCTTCGCTGTGCTTAGTGGCAACAAAAGTGCTACCACCGGAGGTAGTGGGA AGGTTTTGGACAGTGGTCCAGACGACATCGTTTTCATTTACTACACGGACCACGGCAATACCGGCATAATAGGCATGCTA GATGATATGATTACAGCCGACGAGCTTGTAGATGCGTTGAAGAAGAAACATGCCGCAAATTCATATAAAAAGATGGTGAT ATACTTGGAAGCGTGTGAATCTGGGAGCATGTTTGAAGGACTTCTTCCAGATGACATAAACATCTATGCAACCACTGCTG CAAATGCAGAGGAAGATAGTTGGGCATGTTACTGCTATGAAGATTATAACGCTTGTTTGGGAGACCTCTACAGCGTTTCA TGGATGGAAGACAGTGACAAGCATGATTCGACGAAAGAAACTCTGGAAAAACAATATGAACATGTTCGCAAGAGAACAAT TAAGCCTCCAAAAATGCATTCTCACGTGATGCAATATGGAGACATGAGGATGAGAAGTGATTATCTTGCGACATACCTTG GTTCAAACCGTGATGAAGTTTATCAAAACTTCAATCTCACCACCAACAATAATGCAATTCCATATCAACCATCCAGTGAT CCATCAAGACTTATTAGCCAACGAGATGCTAAATTATTTTATCTAAGGCATAAGTTGGAAAAGGCTATGGACGGTTCTAA TGAGAAGTTACAAGCCCAGAAAGAGTTAGATGCTGAAATGGCTCACAGGAAGCATGTGGATAAGAGTGTCAATCTCATAG GGAATCTCTTGTTTGGAGAAGACAAAAGCTCCAACACCATGGTTCATGTTCGTCCGGCAGGGCAGCCTCTTGTTGATGAC TGGGAATGTTTTAAGACGCTGATGAAAACTTATGAGAGGCATTGCGGAGGCTTATCAAGCTATGGAAGGAAGTACACAAG GGCCTTTGCCAACATGTGCAATGCTGGAATTTCTGAGAAGCAATTGATTGCAGCATCATTGCTAGCTTGTCCTGGGAAAA ACCACGCTTCTTAA
Protein sequence (LotjaGi1g1v0616200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNRWISFLIPVIALLWMSMAVTGDHQSSTEGKRWALLVAGSYGYGNYRHQADVCHAYQILKKGGLPDENIIVFMYDDIAN NKENKWPGKIFNKRNGPNVYEGVPKDYTGDAVSVKNFFAVLSGNKSATTGGSGKVLDSGPDDIVFIYYTDHGNTGIIGML DDMITADELVDALKKKHAANSYKKMVIYLEACESGSMFEGLLPDDINIYATTAANAEEDSWACYCYEDYNACLGDLYSVS WMEDSDKHDSTKETLEKQYEHVRKRTIKPPKMHSHVMQYGDMRMRSDYLATYLGSNRDEVYQNFNLTTNNNAIPYQPSSD PSRLISQRDAKLFYLRHKLEKAMDGSNEKLQAQKELDAEMAHRKHVDKSVNLIGNLLFGEDKSSNTMVHVRPAGQPLVDD WECFKTLMKTYERHCGGLSSYGRKYTRAFANMCNAGISEKQLIAASLLACPGKNHAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| PIRSF | 4 | 457 | 454 | 6.5E-191 | ||
| Phobius | 4 | 15 | 12 | - | – | |
| PIRSF | 11 | 457 | 447 | 1.3E-192 | – | |
| Phobius | 16 | 20 | 5 | - | – | |
| Phobius | 21 | 457 | 437 | - | – | |
| PANTHER | 24 | 450 | 427 | 5.1E-180 | ||
| PANTHER | 24 | 450 | 427 | 5.1E-180 | – | |
| Gene3D | 31 | 316 | 286 | 4.9E-127 | – | |
| Pfam | 33 | 294 | 262 | 5.7E-109 | ||
| PRINTS | 34 | 58 | 25 | 6.5E-53 | ||
| PRINTS | 59 | 88 | 30 | 6.5E-53 | ||
| PRINTS | 106 | 121 | 16 | 6.5E-53 | ||
| PRINTS | 134 | 153 | 20 | 6.5E-53 | ||
| PRINTS | 182 | 198 | 17 | 6.5E-53 | ||
| Gene3D | 327 | 453 | 127 | 5.8E-17 | – | |
| Coils | 336 | 356 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Molecular function | Peptidase activity | Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. |
Expression pattern of LotjaGi1g1v0616200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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