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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0617300 |
| Transcript ID | LotjaGi1g1v0617300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cystinosin like; TAIR: AT5G40670.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|P57758|CTNS_ARATH Cystinosin homolog; TrEMBL-Plants: tr|I3SM86|I3SM86_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0617300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:116393819..116398124) extracted from Lotus japonicus Gifu genome v1.2.
ATATTAATTAGGAAAATGGCCACTTGAAACCAGAAGATCCATTTCCGGGGCAAAACACACGCAACCTTTTCAAAACTGAA TTATCATAGTATTTAATTCTAAACAGTTCGAGGATTTTCACAATTTTTTGGAGTTGGTTACTTTCGTCAGCATTCATTCA AATCCCAACACACTTCTGTGAAAATCGTTCAGAGAAGACAAACATGGCGTCTTGGAATTCAAATCCACTCCATGTAACCT ACGAACTTCTGGGTTGGTTCGCTTTCATTTCATGGTCCATCAGTTTCTACCCTCAAGTCATCTTGAATTTTCGCAGGAAA AGGTTCCTTCCTTCTTCTTCTTCTCTCTTTTCTCCTCCACTTTGCAGTTGTTGATTCTTGTTAATTCTCTTTTTTAGTGT GGTTGGGCTCAACTTCGATTTCGTGCTGTTGAATCTCACTAAGCATAGTTCCTATCTCATATTCAACGCTTCACTCTACT TCAGCTCTGCTATTCAGAAGCAATACTTTGACAAATATGGTTACCAAGAGGTCAGGTTTGGTTCCTTCTATTTTTGTTAT GCTATGCTATTCCATCATGCTAAAAAGGTAATTATAGTTTGGTATAAGAATTCTTGCAATTTAACCAAACCCCATTTGGT CTAAGTGGCATGGGGTGTGTTTAAATCTCAAAAAGGGTGTTTTTTTGGATTAAAAATTCCAACTTGACTTTAATTAGTTG GTTGAGAGTTGAGACCATTTGGAATTTTGGATAACTAGAAAAGAGTTTTTGCAATTTATATGGGGTTACTATTTTGGTCT CATCTTTAATAATTGGAATTATTGGAATAATAGGACTTATTTTCAGCATGTTGCAGGAATAGAAAGGTCTTTCATGCTGA AGATTTGATTAACAATCATATTGTTATGATTTTGTCTTGTTTCAGATGATACCTGTGGCAGCAAATGATGTTGCTTTCTC AATCCATGCTGTTCTGCTGACGGCGATTACATTATTCCAGATTGTAATCTATGAAGTAAGAATGATGCTTCTTCTCGTTG AGAATGTTGTTCTCTTTTGTTCCATGGACTGAGTTCTTGAATTTGATGAACTTGTTAACTCTTTTCATTGTAGCGTGGAA GTCAGAAAGTGTCCAAAATTTCTATTGGAATTGTCTTTGTTGCTTGGCTGACTGCTGCAATCTGTTTCTTTATTGCTTTG TCTGATCATTCCTGGCTTTGGCTTCTCTCCATATTCAAGTATGTTGTCTCTGCTTGTGTGGTTAATTGCATTATTTTCAT GCTTTCTGACCTTCAACTTAATCAACTCCCTAGAATTTATGCATATATGTACTTTTAGTTTTGTCTCCGATGGAATTTTT TTCTCAATGCTCTCTTGAGACCATCCTGATTCATCTCTAACTGGCATGCTAATTTGCACAACAAGAGTTAAGTAATTTCT CAGTTTTCACTAATTTAGGAGATGATGAGCACATTCTTGACAATTGTTTTCTGTTAGCTCTGCATATAGCTAGTCATCAC TTAGTTATGTGCTACATAAGAAATTGATTCTTTGACAGTTGACAGAAAGTGTTTCAGTTTTACTTTGAGAGCCCTACCTA GTTATTGATCTTATCTAGGGAAGCTACAGACACACTACCTAACACCTTAACATTTTAATATTTACTATTTTGTGACCTAG CTCTCAGGTGGACAATTGCATTCTTTTGTTTTCTGCTTCCTACCACTATGGACTCCTTGCTTATAGTATTACCTCAGTAC AAAGCTTACAATCTTCTTCTGTATATTGAACTACATCAGACTCATCCTTGTTGTTGTTCTACAGTCTAATGTTCTGCTGT ATAATGGGAGATTTTGTTCTAATTTTTTGTTTCAATTGATCATTTGTTGCAGCTCAATTCAAGTAGCTATGACTATTGTA AAGTACATTCCCCAGGTTAGAATTTTCTTTCAAATTTATTATGTTTTCTTTTCCTATGTAGATGATTATTGAAATACCAC TTTTTAAGACATAAAATACAATAACTGATGCAGCCTAATTTATTGATTGTGCTCTTTAGTACCAATGAATGTGTGTCTGT GTTCCTTTCTGTAGTCCCTATATTACTTCCACTTAATACATTCAATTCTTGCCAGAGAACGAACAACTTATTGAACATAG AAATGTAAAATGAGTAAATGGTTGAATGTACTAAACCTGTAATAATAAACTCTTCAAACATAATAGATGGTTAAGAAGTA TTTGATCTTTATGTCCAAATGGTGAAGTGGGTCTTAATTGTTGTTCTCCCAGAGTAAAATTTTAAAATAAATTAAAGAGA ATTGTAGTAATTATTTGGAAATTTTGAGGAGACCAGGTTTATTTGACAGCTTCTGGCTGTCCATTTAAACACTTGTGTTG TTAATGTAGGTAATCATGAACTTCCTAAGAAAGAGTACTGATGGCTTCAGCATTGGTAACATTCTACTTGATTTTTCTGG AGGCATAGCAAATTATGGACAGATGGTTGTACAATCAGTAGATCAAGGTTTGGCATCCACTTATCTCTGCTATGGATAGG TCCCATTTGCACTTGATTCTATATTTTCACCAACATATTTTCAATCCCATTTTTCCAGATTCATGGGTCAACTTCTACGG CAATATAGGAAAAGTGTTGCTATCTCTGGTAAGGAAAAGTCTCCTGAGGAGTATTTTGCTTCATTCTTACGTTATAACTG TTTCATGATCCCTTTAATTTCCATGTAGTTCTAATTCTGGGTTTATTTTTCGTATGAGTCTAAACTTAGATTATGCTACT CTATTTTGGTTGAGAAAATAAATTTTTTGATGTAAGAGCTTTGACTTAGTACTCAAACAGATTTGTAGATGCTTGTATTG AGGTTTGAATTTAACAGAGGTTGAATGATTCTTGAGCATGGTAGATTACATTTGTTTACAAATTCAGTCAGTCAAAGCTT TAGTAAGTAGTGACATCTTTTTTTGACGAAATACATAACTGCAGGTATCTGTATTCTTCGACATTATTTTCATCATTCAA CATTATGTTCTGTATCCTGCTAAAAGATCCTCCAAATTGGTCACCACTACCGATGATGAAGATCAAATCAGAGAGCACCT TGTTAGACCTTCTGATGTGTCGCCACCAGAGAATGTGTAAGAATTGATTTGATTCATAATGCACATTATACCGAGCACAC AAAGATCAAATCAGAAACCATCTTGTCTTCCCTTCTGATCAGTCACTACTACAGAATTTAAAAGACATGATTTGGTTCAT AATGTACATATTAAAGTTCCCATTGATTGATATTAATGTGAAAAGTAAACTAGGGTGCTTCTTTTGTCTCACACCAAGAG CACCATCTAGCTTGGAGCTTCAATAAACTTTGTTGTATAAGTTATAAGAATTACAGCCTCTCTCATTCTTTATGCTAATT TGTATTATAAATTTCTATCTGATAGCATTTTATTGTCTAGCTACTTGTTCTCTATTCGGTGACTGTGGCAAAAGATCTAT TAAAACAGAGATATCTGGTGACGCTTTATTCTCCATTGGTGATATGTGGCTCATCACGGGCGACCTTTCGATTTAAATTT GATTTTTTGTTTCCAATATTGCCTTCATATATTTTAAGCTTAAGCTACTTCCAATCTTTCTTTCACCCCTATTTGCCTAT TTTCCTATGATGTTAGACAATGTTGGACTTTGGGCTTGGCGTCCCATTGTTTCAAGATAGGCACTATGTGCAAGATAGGC ACTTTATGCATGATGATGCTTGGTGGAAGAGGGAAATTTCAGAGCCTTTACCACTATCTCACGTTTATGTATGCTTGTCA AGTGATGTAGCCCAGTTGCTGATTTTTAGTGTATTTTAATGTAACGTGAGCTGAAATTTTAGTCTTCCTTTTTGTGTGGA AAGTTGGGTATCTTAGTAATGCAAATAACACAGAGAAATGAACCCAAATCTTGCTTTGATTTAGGTTGATCTACCAATTG TGGTCACTGTTTTTTCATTATTTTTAGGGCTCTGGCTCCTTTCGAGTTAGATGGTATGAATTAACAAAGATGTATGAGCT GATGTAGTCAATTTCTGATTTTAAGTGTTTTTTAATGGAAACTATGCTGCCTTTTTATTCATTTTGTTTGTGGTATGCTG GGTATCTTAGTAATGCAAATAGCAAAAAGAGAAATGAACTCAAATCTTACTTTGGTTAAGGTTGATCTTCCAATTGTGTC ATTGATTTTTCAATAATTTTAGTCTTTGTTACTTTTCTGGCTACTTTTGAGTTACATGGTATGCAT
CDS sequence (LotjaGi1g1v0617300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCTTGGAATTCAAATCCACTCCATGTAACCTACGAACTTCTGGGTTGGTTCGCTTTCATTTCATGGTCCATCAG TTTCTACCCTCAAGTCATCTTGAATTTTCGCAGGAAAAGTGTGGTTGGGCTCAACTTCGATTTCGTGCTGTTGAATCTCA CTAAGCATAGTTCCTATCTCATATTCAACGCTTCACTCTACTTCAGCTCTGCTATTCAGAAGCAATACTTTGACAAATAT GGTTACCAAGAGATGATACCTGTGGCAGCAAATGATGTTGCTTTCTCAATCCATGCTGTTCTGCTGACGGCGATTACATT ATTCCAGATTGTAATCTATGAACGTGGAAGTCAGAAAGTGTCCAAAATTTCTATTGGAATTGTCTTTGTTGCTTGGCTGA CTGCTGCAATCTGTTTCTTTATTGCTTTGTCTGATCATTCCTGGCTTTGGCTTCTCTCCATATTCAACTCAATTCAAGTA GCTATGACTATTGTAAAGTACATTCCCCAGGTAATCATGAACTTCCTAAGAAAGAGTACTGATGGCTTCAGCATTGGTAA CATTCTACTTGATTTTTCTGGAGGCATAGCAAATTATGGACAGATGGTTGTACAATCAGTAGATCAAGATTCATGGGTCA ACTTCTACGGCAATATAGGAAAAGTGTTGCTATCTCTGGTATCTGTATTCTTCGACATTATTTTCATCATTCAACATTAT GTTCTGTATCCTGCTAAAAGATCCTCCAAATTGGTCACCACTACCGATGATGAAGATCAAATCAGAGAGCACCTTGTTAG ACCTTCTGATGTGTCGCCACCAGAGAATGTGTAA
Protein sequence (LotjaGi1g1v0617300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASWNSNPLHVTYELLGWFAFISWSISFYPQVILNFRRKSVVGLNFDFVLLNLTKHSSYLIFNASLYFSSAIQKQYFDKY GYQEMIPVAANDVAFSIHAVLLTAITLFQIVIYERGSQKVSKISIGIVFVAWLTAAICFFIALSDHSWLWLLSIFNSIQV AMTIVKYIPQVIMNFLRKSTDGFSIGNILLDFSGGIANYGQMVVQSVDQDSWVNFYGNIGKVLLSLVSVFFDIIFIIQHY VLYPAKRSSKLVTTTDDEDQIREHLVRPSDVSPPENV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 273 | 273 | 2.0E-159 | ||
| Phobius | 1 | 14 | 14 | - | – | |
| PANTHER | 1 | 273 | 273 | 2.0E-159 | – | |
| TIGRFAM | 13 | 243 | 231 | 1.3E-70 | ||
| Pfam | 14 | 69 | 56 | 1.7E-17 | ||
| Phobius | 15 | 36 | 22 | - | – | |
| TMHMM | 15 | 37 | 23 | - | – | |
| SMART | 26 | 57 | 32 | 2.5E-7 | ||
| Phobius | 37 | 56 | 20 | - | – | |
| TMHMM | 49 | 71 | 23 | - | – | |
| Phobius | 57 | 73 | 17 | - | – | |
| Phobius | 74 | 92 | 19 | - | – | |
| TMHMM | 86 | 108 | 23 | - | – | |
| Phobius | 93 | 113 | 21 | - | – | |
| Phobius | 114 | 124 | 11 | - | – | |
| TMHMM | 121 | 143 | 23 | - | – | |
| Phobius | 125 | 142 | 18 | - | – | |
| Phobius | 143 | 147 | 5 | - | – | |
| TMHMM | 147 | 169 | 23 | - | – | |
| Phobius | 148 | 168 | 21 | - | – | |
| Pfam | 152 | 209 | 58 | 2.3E-16 | ||
| SMART | 165 | 196 | 32 | 4.9E-10 | ||
| Phobius | 169 | 179 | 11 | - | – | |
| Phobius | 180 | 202 | 23 | - | – | |
| TMHMM | 182 | 204 | 23 | - | – | |
| Phobius | 203 | 221 | 19 | - | – | |
| TMHMM | 219 | 241 | 23 | - | – | |
| Phobius | 222 | 243 | 22 | - | – | |
| Phobius | 244 | 277 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0617300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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