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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0617900 |
| Transcript ID | LotjaGi1g1v0617900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT4G12560.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SU30|CPR30_ARATH F-box protein CPR30; TrEMBL-Plants: tr|V7B4N7|V7B4N7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0617900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:116475076..116476241) extracted from Lotus japonicus Gifu genome v1.2.
GCAAAACCTAACAATGGGAGAAGTAATCACAATGGAGTGTTTGCCACGAGATTTGGTATCTAGTGTCCTTTTAAGGTTGC CAGCGAGAGAGTTGTTGAAGTGCAAGTTGGTTTGCAAGTCCTGGTTTGATCTCATAACTGATCCTCACTTTGTCACCAAT TACCATGTTCACTACAACAATCTCATTCACTCTCAAGAGGAGCATCGCTTGGTCATTCGCACACCTAATGATTCTTGGTT GGAAACTAACATTTCTGTGCTTTCTTGGAATGTCAATGATCTCAAAAAAATCCTTTCGTCCACCCTTTTAAACCTTCCTC GTGAAATCAATACTATGAACGACTACTGGTCCGAGATCATGGGTCCTTGCAATGACATATACTTCTTACAAAGCAGTCCA TATGTCATGATGAATCCTTCTTTGAAACAATTCAAAGTTTTGCCTGAATCTCATTTCACTGCTTCTTTGCCTGATGATGC TTATTACTATCTTACTAATTGTGCTGGGTTTGGATTTGACCCCAAAACTAATGACTACAAAGTTGTTGTCATCAAGGACC TCTGGTTAATGGAAACAGATGATAGACAAATTCGGTCTCGGACAGCTGAGTTATACAGCCTCAATTCCAATTCTTGGAGA AAACTTGATGCTGATCTCCAACTTCCTGTTAGGAACTGGGATTCAACTCCAGTTTATACTTTTGTGAATAATTGTTATGG TTTGCCTTTGTTGATGACTTTGTTTATGAGTATGATGATGACTCGGATGATGAGTATGATGAGTATGGGTGTCGTGTAAA AGAGGATGCAGTTCTAGCATTTGACATGGTTGATGAATCATTCAGAAAGATAAAAGTGCAAAAATTACGTCGTTCTTCAC AAGAAGAGTTTGCAGCTCTGCTTCCCTTCAACGAATCTGCTAGCATTGGTGTCATTGTTTACCGAGTAAATGGTAAATTC TTTGACGTGTGGGTGTTGAAAGATTATTGGAATGAAGAGTCTTGGGTTAAGCAATACAGTGTTGTCCGTTCCATTCAGAA GCTCGTGGGGTTTGATGGGCACAATCAGTATCTTTGGGTGGATAGGAGTGGAAGGTGGGTGTGGTATGAATCTGAATCTG GAAAAACAAGTTATCTTCAGGTTTCTAGAAATGATTGTTTGCTAAG
CDS sequence (LotjaGi1g1v0617900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGAAGTAATCACAATGGAGTGTTTGCCACGAGATTTGGTATCTAGTGTCCTTTTAAGGTTGCCAGCGAGAGAGTT GTTGAAGTGCAAGTTGGTTTGCAAGTCCTGGTTTGATCTCATAACTGATCCTCACTTTGTCACCAATTACCATGTTCACT ACAACAATCTCATTCACTCTCAAGAGGAGCATCGCTTGGTCATTCGCACACCTAATGATTCTTGGTTGGAAACTAACATT TCTGTGCTTTCTTGGAATGTCAATGATCTCAAAAAAATCCTTTCGTCCACCCTTTTAAACCTTCCTCGTGAAATCAATAC TATGAACGACTACTGGTCCGAGATCATGGGTCCTTGCAATGACATATACTTCTTACAAAGCAGTCCATATGTCATGATGA ATCCTTCTTTGAAACAATTCAAAGTTTTGCCTGAATCTCATTTCACTGCTTCTTTGCCTGATGATGCTTATTACTATCTT ACTAATTGTGCTGGGTTTGGATTTGACCCCAAAACTAATGACTACAAAGTTGTTGTCATCAAGGACCTCTGGTTAATGGA AACAGATGATAGACAAATTCGGTCTCGGACAGCTGAGTTATACAGCCTCAATTCCAATTCTTGGAGAAAACTTGATGCTG ATCTCCAACTTCCTGTTAGGAACTGGGATTCAACTCCAGTTTATACTTTTGTGAATAATTGTTATGGTTTGCCTTTGTTG ATGACTTTGTTTATGAGTATGATGATGACTCGGATGATGAGTATGATGAGTATGGGTGTCGTGTAA
Protein sequence (LotjaGi1g1v0617900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEVITMECLPRDLVSSVLLRLPARELLKCKLVCKSWFDLITDPHFVTNYHVHYNNLIHSQEEHRLVIRTPNDSWLETNI SVLSWNVNDLKKILSSTLLNLPREINTMNDYWSEIMGPCNDIYFLQSSPYVMMNPSLKQFKVLPESHFTASLPDDAYYYL TNCAGFGFDPKTNDYKVVVIKDLWLMETDDRQIRSRTAELYSLNSNSWRKLDADLQLPVRNWDSTPVYTFVNNCYGLPLL MTLFMSMMMTRMMSMMSMGVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 226 | 226 | - | – | |
| Gene3D | 3 | 55 | 53 | 3.4E-9 | – | |
| ProSiteProfiles | 4 | 57 | 54 | 10.875 | ||
| SUPERFAMILY | 6 | 58 | 53 | 4.58E-12 | ||
| Pfam | 6 | 48 | 43 | 2.6E-7 | ||
| PANTHER | 9 | 211 | 203 | 3.6E-24 | – | |
| PANTHER | 9 | 211 | 203 | 3.6E-24 | – | |
| SMART | 10 | 50 | 41 | 2.8E-7 | ||
| TMHMM | 225 | 247 | 23 | - | – | |
| Phobius | 227 | 248 | 22 | - | – | |
| Phobius | 249 | 261 | 13 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0617900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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