Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0618200 |
| Transcript ID | LotjaGi1g1v0618200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT4G12560.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SU30|CPR30_ARATH F-box protein CPR30; TrEMBL-Plants: tr|A0A151RZ92|A0A151RZ92_CAJCA F-box protein family; Found in the gene: LotjaGi1g1v0618200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:116504295..116510711) extracted from Lotus japonicus Gifu genome v1.2.
ATCTCTTTCCTTTCTTTTATTTTTAATCATTCCTAGAAAGACGCAGAAAATTCACGGTTCCAAATTGACATTGTTCAGAG TCCAAAAACCCGAAAGAGAGATCGCAAGCATGGAGCAGTTGCCACTTGAATTGGTATCAAACATCCTCTCAAGGTTGCCA GCTAAAGACTTGATGAAATGCAAGTCCATTTGCAAATCCTGGTTCGATCTCATAACCAATCCGTATTTTATTACCAATTA TTATGCTTTCTACAACGATCTCATTCGCCATCATGAGAATCTTTTTGTCATTAGAAGACCCTTTCTTTCAAGCCTCAAAA CTTGCATTTCTTTGCTTTCTTCTAATGTCAATCATCCCAAAAAGTATGCCTCTGAACTTCTAAAACCCCCCTCTGAATAT AATTCTGAGTACAAATACTGGACAGAAATCATGGGTCCTTGCAATGGCATATACTTCTTAGAAGGCAATCCAAATGTCAT GATGAACCCTTCTCTGAGACAGTTTAAGGCTCTGCCTCAATCCCATTTGGCCATTGCTTCACAAAACACTTACTCTATCA CAGAATATGGCGGGTTTGGGTTTGACCCCAAAACCAATGACTATAAAGTTGTTATGATCAAGGACATCTGGTTACAGAAA ACAGATGAAAGACAAATTGGGTATTGGACAGCTGAGTTATACAGCCTCAATTCCAACTCTTGGAAAAAACTTGATGCTAA TAGTGCTCTCCCACTTCCCTTCGAAATTTGGGGTTCTTCTAGGGTCTATACTTATGTGAACAATTGTTGTCACTGGTGGG GTTTTATTGATGACTATGGTGTAAAAGAGAATGTCGTTCTAGCATTTGACATGGTCACTGAAGTCTTCAGAAAAATCAAA GTACCCAGAGTTTGTGCTTCTTCAGAGGAAGCTTTCAAAACTCTGGCACCCTTTAATGAATCTAGTACCATTGGTGTCAT TGTCCACCCTGTAATAAGAGATGTGAAACACTACGACGTGTGGGTGATGAAAGATCATGGGGATGAAGGTTCTTGGATGA AGCAATACTCGGTTCGACACAAGGAAGTGATTTACAAGGTTGTGGGGTTTTATGGTAGCCACCATTTTGTTTGGAACGAT GACAATGAAGGACTAATTCCTAGCTTGCAACAAATAAAAGATCTTCGGGTTTATGGAAGGTGTGAGGGGTTAAGAGCCAC GAGATATATGGAAAGCCTCATTTCATTGCACAGGGGAAATGAGTTTAGCAGCCAGTTTGTTTCGTGTACCTCGGTTTTAG ACACTTTGGCTTTGCCAAATCAGAGAAGGAAGTTCATGGTTAGTTTGTCACAGAAGATGAAGACATTCTTGAAAATATGT TATGATGCATTGGTTAATACTTAATAGGTTTATTTTTTACCACAAGTAGTGAGATAATTATGTTTGAATAGGGAACATCT AAATATTAATGGAGCTAGCTCTACACAAGGTAACAATGTTTGTGTAGTGAACATCTAGCTAGCTCTACTAATAGGTTTTC ATACTCCCTTCGTTTCAATATAATTGTACACATAGTGAAGACGCACACATATTAAGAATGCAATAAATTTTGTTAACTTT TTAAAATGTATTATTATCTCTCATCATTTATTTTAATTATAGGGGCATTATATAGAAAAACACCGATTAATGCTTCATTT GAATTATAAGTGGACAATAATTACTCCCTATGTTCCTATATATAAGTCACAAATAACTAATTCTCTTAGATTAATAAAAG TAGTTACTAATAATAAATTTGTAAAGAAAATGATTAACTTTCCTAAATTACCCTTATTTACTTTCTTATGATTTTCTCTC ATCAAGTTAATATTGTAAAAGTTCATCATCTCTTTCATATTAAATATGATGGTGAATTTGTAAAAAAATATTTAATGGTT CATAGATATTAGAAAGTGACTTATATTTAGGAACAATTTTTTTAAAAATGTGACTTATAATAAGGAACGGAGGGATTATG AAACAAAAAAATTATCTCTAAGTGGACAGTTAATTAGAAACGTAAAGAGTACATCAGAATAGTTGACTCTAGTTTATTAC TTCTTGGAATCAATTATGTACTATATCAATTGACGAGGAGGACTATTTTGGTCCGTCATTTTTAAGCGTGTATTAGACTA AGATATGCACGGTTAATGTATACAAGTTCTTTTTTTTATAAGCAAGATGAATATATTGAAGTGAAGTACAAGGGGTACTT CAACCCAATACAGGTTAATGTATACAAGTGATAACCAATCAAATAAATGACGACCAATCAAACTATGTCACATGAGACCA AGCTGTTACCTTTCGTTTCCGCTTAGTGATGACCAATCAAACCGTGGGCTTATATTATTGGTGAATTTTTTATTTTATTA AAATGATCAGTTGATACCTGATATATTTTTCTCTGTGTGACCATTTGTTAATGTGATCTTTTTGAGTTGTTTAGGAATCA TCATGTGAATATAAATTTATTGAGTTGAGCGCAATAGAATAGTGTGTGGTGTGCCTCAACCCATTTTCACATTGAGGCTA ATTAGCGTGATTTGATTTGTTTTCTATTTTTTATTAAGTACTCAACCGGTTTAAAATATTTGTCCATTTATAATTTCAAG TGAGCATTAATTGTTGTTTTTCATATAATGCCCAATGAGCAAAATAAATCAAAGATTAAAGTAGAAATCAAAAGGTAAAC TAGGAAAACAAATATTATGTTTTAAGAAGTTAACAATATAATTTCAAAAAAAAAGTTAACAATATTAATTGCATTTCTTA ATATGTGTGTTACTTATCTTTTCAGACCGTTATTTTGAAATCGAAGGAGTAAAAGAAAAGAGAGATTTTGACTCATGTAT AGGGATCTTATCATGATATATTTATATTTTATGGTTAAGTACGTTTTTAGTCCGTGTAAAATATACGTGAATTGGATTTG GTCGCTCAAAAAATATTTCATAATTTTTAGTCTCCAACATTAATGAAGCGAGTATTTGGGTCTCTTGATTCATTTTATGG TTCTTTAAACTGCCACTAAAATAAATAATAATAATTTATAGCGGTTAAGGATCACCGCTTGTACACACAAATTGTCACAA AATATCAAAATATACGACATAGACTAATTTCACATATTGCAATAATATTGGTGGACTAAAAAACGTAACTATAGAATTTT TTTTTAAGGGAACAAATTCAATTGATACGTATTTTACTTTTACTGGACTATAAACATATTTAACACTACTCTTATTCTTT ATATTCTGAGTGTTATTTCACCTATGTTAGTGTTAACGTAGGAAAAGAAAGGCACAACTTGATTCAGACAGTACGATAGA GCGAGAAAGCACGAATAAACCACACAGAAACTTTGTTCACGCAGTTCGGCCAATTGAGCCTACCTCTGCGGCTATAGAGT AGCTATAGCTCCCTTTATTGATTCTCAATAATCAATTGTGTTTACAATAACAATTTCTCTCAACTGTATAATTGTCTCAC ACATCTGCAATAGCAGTTTCTCTCAACTGCCCAATTGTTGTGTATCCACGCACACCGCTGAATTGCGGCGCACTTGCACA CCGCCCAATTGCGGCGCGCTCCGCTCACACCTGGCGCACACTAGAACACTTTTAGGGTTAGGGGTTTTATCTATTTATAG GACACTACTAACTCTAGTATTACAAGATAACATAATCTTAACATCTTATCTAAACCCATAAGATAAGATAGAATCCCTCT ACACCTATATCACAATCCCCTTAAATCAAATACAAATAACTAATAAAATAATGAGCCAATCCCAACAATCTCCACCTTGG CGAATTCTCGAACCCTCGTGAAGATCAACTGCTCAACTCTTGAATCTTGATTTCCGGGATTGTTTTCCCCATTAAATCAA ATCCTAATAAACTGAATATTTGGGCTCAAAATAAAATATGTGGGCCCCATATTTTCCTAATGAGCCAATTTCCAACAATC TCCACCTTGGCGAATTCCAAACTCCCTTGTGATGATCTGTTGCTTCAGTTTCTGGACTCAGATTTTCAGGATTGGTGGTG ACTGGCTTAGTCAACATGTCTGCTACACTCTGACACTCGAACTCCACCTTGTTCAACACCATGTCCTGTGTCTGTTAGAT CTGTCAATTTCTCCTCTCGATGACTTCTGCAATCCTCATGACTTTTATCCATAGCGGAAGATATCCAACCTCGCACCGCC GTTTGCTCCACCGTGAGAAACGGAACACTCCAACTGACCATATTGTCAAGGGATACTTTCGGCACACCAGCCTCGGTCCC GCGAACCAGGCGCTCTGATACCAATTGTTAACGTAGGAAAAGAAAGGCACAACTTGATTCAAACAGTACGATAGAGCGAG AAAGCACGAATAAACCACACAGAAACTTTGTTCACGCAGTTCGGCCAATTGAGCCTATCACAATCCCCTTAACATCTTAT CTAAACCCATAAGATAAGATAGAATCTTATCTAAACCCATAAGATAAGATAGAATCCCTCTACACCCATATCACAATCCC CTTAAATTAAATACAAATAACTGATAAAATAATGAGGCAATCCCAACCGTTAGTTTACTCTAAAACTTGACCAATTTGGA CGAGACTGTCGGTTGAATGCAAGCTTTGGTATGAAAAGGACAACTACTAACAATTTTCTGTTTGGGTCGATCAGGTTCAT TTGAAAACTCAGAACAAAACTGCATGTGGAGATTGTTAAATTAAAATAACAGACCACCAGCTAAGACCAGAACAAGGCTT AATTAAGAATTATATTAAGAACGCGGTACATTAGAGAGCACATTTTAACTTACTCAATTAAAAAAACTTGAAATGTGAGC TATTTTGCTCTGTTGATAAAAAAAATGATTTTTCAGTTTAAATAACCGTCACACAACAAGGACACCCCTATATAGTATAT GCATAAAATAACCACTATATATACAACCATTCGATACAAGCACTAGAACAACAACAAAGGCCAATCTGAACCAAAGTAAT CATTCAATACATTACCCCAAAAACTAATTAGGCCAACCAGTACACCATGATTTTCTATTGCTTTCTTTCCTTTCTTTTAT TTTTGATCATCCCAAGCAAGATGCAGAAAATTCAGGCTTTCAAGTTGACTTTGTTCAGAGTTCAAAGACCAAGAAGAGAG ATCACAAGCATGGAGCAGTTGCCACAAGAATTAGTATCAAATATCCTCTCACGGTTGCCAGCTAAAGAGTTGATGAAAAA CAAGTCCGTTTGCAAATCCTGGTTCAATCTCATATCTGATCCTTATTTTGCTACCAATTACTATGCATTCTACAATAATC TCAAGCAACAAGAAGAGCCTCTGTTTGTCATTCGAAGACCCTTTCTTTCAACCCTCAAAACTTGCATTTCATTGCTTTCT TCAAATGTCAATGATCCCAAAAAGCATGTTTCTTCTGAACTTCTAAACCCTCCCTCTAAATACAATTCTAGCCACACATA CTGGACTGAAATCATGGGCCCTTGCAATGGTATATACTTTCTAAAAGGCGAACCAAATGTCCTCATGAACCCTTCTTTGA GACAGTTCAAGGCCTTGCCCGAATCTCATTTGTCCATTTCAGATGACAGTACTTATTCTCTCAGGGATTTTGCTGGGTTT ACCAATGACTACAAAGTTGTTGTGATCAAGGATCACTGGTTTGAGAATTTAGTACCACAAAATTGGACAGCGGAGTTATA CAGCCTCAATTCCAACTCTTGGAGAAACCTTGATGCTGTTGTGCCACTTCCCTTCCAAATATGTGGCTCTTCTCATGTTT ATACTTATGTGAACAATTGTTGTCACTGGTGGGGTTTCTTTGAAGAGTGTGGTGTAAAAAGGATGTTGTTCTCGCATTTG ATATGATCACTAGAGTCTTCAGAAAAATTAAAGTACCAAAAATTCGTGATTCTTCCGAGGAAGCTATCACAACTCTGGCA CCCTTTGACGAATCTGGTACAATTGGTGTCATTGTCCACCCTGCCCTAAGTGCAGATGTGAAATGCTTTGACGTGTGGGT GATGAAAGATCATTCGGATGAAGGTTCTTGGATGAAGCAATACTCGGTTCGACACACATAAGTGATTTATAAGGTTTTGG GGTTTTATGGAAGCCATTGTTTTGTTTTGAACGACGACAATGAAGGATTAAAGCCTAGCTCGCAACAAATAAAGGATCTT CAGGTTTATGGAAAGTGTGAGGGGTTAAGAGCTATGAGGTACCTGGAAAGTCTTGTTTCACTCCACAAGGGAAATGAGTT TAGTGATCAACTTGTTTCATGTACCTCAGTTCTAGACCCTCTACCGAATCAGCAAAGGAATTTCATTGTTTGTTTGGCAC AAAAGATTAAGACATGC
CDS sequence (LotjaGi1g1v0618200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCAGTTGCCACTTGAATTGGTATCAAACATCCTCTCAAGGTTGCCAGCTAAAGACTTGATGAAATGCAAGTCCAT TTGCAAATCCTGGTTCGATCTCATAACCAATCCGTATTTTATTACCAATTATTATGCTTTCTACAACGATCTCATTCGCC ATCATGAGAATCTTTTTGTCATTAGAAGACCCTTTCTTTCAAGCCTCAAAACTTGCATTTCTTTGCTTTCTTCTAATGTC AATCATCCCAAAAAGTATGCCTCTGAACTTCTAAAACCCCCCTCTGAATATAATTCTGAGTACAAATACTGGACAGAAAT CATGGGTCCTTGCAATGGCATATACTTCTTAGAAGGCAATCCAAATGTCATGATGAACCCTTCTCTGAGACAGTTTAAGG CTCTGCCTCAATCCCATTTGGCCATTGCTTCACAAAACACTTACTCTATCACAGAATATGGCGGGTTTGGGTTTGACCCC AAAACCAATGACTATAAAGTTGTTATGATCAAGGACATCTGGTTACAGAAAACAGATGAAAGACAAATTGGGTATTGGAC AGCTGAGTTATACAGCCTCAATTCCAACTCTTGGAAAAAACTTGATGCTAATAGTGCTCTCCCACTTCCCTTCGAAATTT GGGGTTCTTCTAGGGTCTATACTTATGTGAACAATTGTTGTCACTGGTGGGGTTTTATTGATGACTATGGTGTAAAAGAG AATGTCGTTCTAGCATTTGACATGGTCACTGAAGTCTTCAGAAAAATCAAAGTACCCAGAGTTTGTGCTTCTTCAGAGGA AGCTTTCAAAACTCTGGCACCCTTTAATGAATCTAGTACCATTGGTGTCATTGTCCACCCTGTAATAAGAGATGTGAAAC ACTACGACGTGTGGGTGATGAAAGATCATGGGGATGAAGGTTCTTGGATGAAGCAATACTCGGTTCGACACACATAA
Protein sequence (LotjaGi1g1v0618200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEQLPLELVSNILSRLPAKDLMKCKSICKSWFDLITNPYFITNYYAFYNDLIRHHENLFVIRRPFLSSLKTCISLLSSNV NHPKKYASELLKPPSEYNSEYKYWTEIMGPCNGIYFLEGNPNVMMNPSLRQFKALPQSHLAIASQNTYSITEYGGFGFDP KTNDYKVVMIKDIWLQKTDERQIGYWTAELYSLNSNSWKKLDANSALPLPFEIWGSSRVYTYVNNCCHWWGFIDDYGVKE NVVLAFDMVTEVFRKIKVPRVCASSEEAFKTLAPFNESSTIGVIVHPVIRDVKHYDVWVMKDHGDEGSWMKQYSVRHT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 40 | 40 | 1.2E-8 | – | |
| ProSiteProfiles | 1 | 51 | 51 | 12.703 | ||
| SUPERFAMILY | 1 | 73 | 73 | 4.84E-14 | ||
| Pfam | 3 | 40 | 38 | 6.6E-8 | ||
| PANTHER | 4 | 314 | 311 | 5.6E-39 | – | |
| PANTHER | 4 | 314 | 311 | 5.6E-39 | – | |
| SMART | 4 | 44 | 41 | 1.5E-9 | ||
| TIGRFAM | 108 | 316 | 209 | 4.9E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0618200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…