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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0623800 |
| Transcript ID | LotjaGi1g1v0623800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Kelch repeat-containing protein; TAIR: AT3G27150.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9LI89|FBK70_ARATH F-box/kelch-repeat protein At3g27150; TrEMBL-Plants: tr|A0A072TX07|A0A072TX07_MEDTR Galactose oxidase/kelch repeat protein; Found in the gene: LotjaGi1g1v0623800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:117115133..117119060) extracted from Lotus japonicus Gifu genome v1.2.
AAGCAACATGGGAAGCTCAGTCACTGTATGAAGAGCACAGTGCACTCTCTCTCTTTCACACACCTTTTTCTCCAATGGGC TAATAAAAAATATGGTGGGTGATGGTGTGGTTGATGAGGATGCCAATTAAACTATTATTTGGGGGAGTGTATTTTAATGC CCAAAAACGAGGCATAATATAGTAAACTAAGCATATGTTTCCAGCAAATGGTGGGTGTCTCAGAGTTGGATCTCTCTCTT ATTCTCTTCTTCACCAAGTCACACTCCAATTCACTCACATTTTTTCTTTCTCCTTCACTCTCTTCCTCTGCAAATTTTAC TTAAACAACCTCTATGCTGTTATCATCAAGCTATGTGAGCCTTAGGCCACCCCTAACGTCTCTTTTCTCTGTGTTTTGAT TGCTTGTTCTGTAACGTTTCAACACTCCATTTACTGCTACCTTTGACTTGGCTTAATTCCCTTTGTTCAATACACGTTTC CTTTTTGCAATTAGCTCTCTCTCCCTCTCTCTATCTCTCTCTCTCACTTTGTTTTGGTCTTTATATTATGTCTAAGCGTT TCCTTATTGGCGTTTCTCTCCTCCATTCACCTTTGAAAGCTTTCTTCCGCTTCTGAATATCTGAATACATATGCACAAAC CCATGGCTTAAATCTTAGCTTTTCTTTATGGTGTTTCTCTCTATGAATGCTGATCAACCTGCCATGATGTGATGGCAGTG ATGCTCTTTACTTTCTGTGCTCGGGGTTCTTTCATCTGGGTAAGTATCTTTTTCCAAGATGGATTGCAAGCATTTCTATG AACAATATCAATAGCCATAGCTAAATCATTTTGGGACTGAGATTCACAATCTTTTATTCTCGAAAGTTTGTTGCCCAACA AATGGAATTGCCTTACTTAATTTGTTAATTCCTTACTTTTTTTGTGCATGTGAGAAGATGTAAGTTTAATCATTTCTTAA AATTTGTTTCTCCTTCTGTTTTGAGAATCCAACATATGGAAAGGTTTTTAGTTTTCATTCTTGTTTTGTTAGATTTCTTT GTTTAGTTCAAATTGTGTATCTAATGCATCATAATGATTAATATGGGGAAGATTTTTGGTTTTCATTCTTGTTTTCCAGA TTTCTTTGTGTGCTTGTTCAATTTATGTATTTACCGTTAGAATTTGGATCCTTTGCAGCATAGGTTCTCTACAACTCTCT CCTACAATTATATGCTCTTATATTGTATTTAAGACCGTGATTAATCTAAATAAAGAGTTAATTCATATATTTAGGAATTT ATGATGATTTATTAGCTGAAGAGACCGCAGAGAATTTGAATTCGCCTTGTTCAACTTATGTATTTATGATTCAAATTTGG ATTCTCTGCAACAGAGGTTCTCTATAGCTCTCTCCAACACAATTATAAACCCTTGAAGGCTATGATTAGTCTAAATAAAA AAACAACCATAGTGAATTGAAGAGTTTATGAGATGATTCATTAGCTGCAGCCGAGAATTTGAATTCTTGTTATGCTTTTA TATGTCTTGCTCTTAATGCCTCATAATGGTTCAAACAAGAAATTGTTGTTGCTGATACTTTTGTCTGGATCTTCTTTATG CAGTTTCAGGCAATTGTTGGCTATATGTAGTAAATTTTCTATTGTCAAGATTTAGAGGGAGGCAGAACACAAAAAGAAGC ATTTGCCTGTACCTGACTTATTATGGTTATGGCCAATAAAAAAGCATTACTTGTTTCAAACTTTGGTAGTGCCTTTGACT TTGGTTACTATAATTCACCAGCAGAGAAGATGAGAATTCTCGAATTGTCACCACCCTCCGACGGCAACGGTTCTTCAACT CATGATGAAGAACCTTTACCTCAGGATGCAGATTATATTGTTCCGAGTCTCAGCGACGAGCTAGAGACAATGATCTTGGC CAGGTTTCCAAGATCACAGCACTGGAAACTGTGCTTCCTAAACAAGCGGTTCTTGAATCTATTCAAGAGCGGCGAGATCT ACAAAATCAGAAAGGAGTTAGGAATCAAAGAGCCCTCAGTGTTCATGTTAGCCAGTGGTGAGAGCAACTGGTGGGGAATG GACTGGCCTTTCAAGAAAAGTAGGAAGCTCCCTCCAATTCAATCAGATTACAGCTTTGAGTATGGAGATAAAGAATCATT CTCAGCAGGCTCACAACTCTTGGTTTCAGGCAAGGAGATTGATGGCGCGGTTATTTGGCGGTTTGACGCGGAAACAAACG AATGGTTTAAAGGACCATTCATGATCAACCCAAGGTGCCTTTTCGCGTCGGCTACCAGCGGTTCTATAGCCTTTGTTGCT GGCGGTCTTGACTCACAATCTTACAGCCAAGTCCTGGATTCTGCTGAGAAGTACAACTCTGAGACACAATCTTGGGAATT TCTCCCAAAGATGAATCAGAAGAGGAAATTTTGCTCTGGTTGTTTCATGGATAACAAATTCTATGTCATTGGTGGACAAG ATGAGAATAATAAGGACCTCACTTGTGGAGAGTTTTATGATGGAAAAACAAACAGCTGGAGCCTAATTCCTGACATGTTG AAAGATATTCCTCCCTCAGTTTCGCAGTCACCGCCTCTCATCGCAGTCGCGAGTAACGAGCTTTACTCGCTTGATGCTTC TTCCAATGAGCTGAAAGTGTATCTCAAGGGAAGTAATACATGGAAGAAGCTCGGGGGGGTTCCGGTGCGGGCTGATGCTC AGGGAGGTTGGGGTGTGGCGTTCAAATCTCTTGGTGATGAGTTACTTGTTATTGGTGCGCCTTCTGTGTCTCACACAGAG CGTGCTCTGGCAATGTATACTTGCTGCCCTGATCCGACCGCTGAGAAACTGCGATGGAGGCAGATTGAATGTGGTAGCAT TCAGCTTAATCACTTCATTCGCAATTGTGCTGTGATGGGAACTTGAAAAGTCTGAATTTCAAGCAATAACATAGCTTGAA AGTTTAAATCAATCTCCAGAATAAAACTTGCAGGGTTGATCTAGGAATATCTTCCGATCAAGCTTCTGCTCACATTGGGC AACAACATAAACAGTACGTAAAGTAAAGTACTGTGTCTAAGTTTTATCCATCCTTTTGCTTTTACTATCATCTCATGTGT GTGTGTCTGTGTTTTTCTGAAGCAAAGCTAGTTGATGTAACTTGTTCTTTAATTTCCATCGTTAAATTGGTAAGGTAGTG ACAATGGTAAGTGCATCTTAGTGTTGTTACAGAAAATCAGATAATGAGCTTCATATAGCTCAAATGCTATTGCTTCTGTT CCATGTTCTGAATGATGCCCTAATTATGTTATTAATGTATGGATTTTAAATCATGTTTTGGAATATCAATTTTTAACTAT GTACTTAAAAGAGTAAAAGACTCTTCAGTTCATTGTCTCCAGTTGCAATACTACATCAAGGGGAACTGATTTAGTTATTT GTGGCAAGATGTTAATTGAAGAATGGACCTTGATTTTTTGTTTACAGGCAAATGCTAGTTGTTATTAATATTAGTAAATT AGCTAACCCTCGTAGCCAAGAATGAACCTTGATAAGCTAGTATCTTATTTACTTTAAGAAAAAGCAATGAAAGTGAAGAA GGTTGGGATAAAAGTTGGGTGTCGCCTAATATACACCTGTAAAAAATGATCAAAACTGAACCACTAAAATTTTACGCTGT CAGCATGTCAAGTTAGAGTTTATTATTTTGTTATTTTCTTTTCATTGTCTTATTCCACCATAGCTTACCCCATCATCAGC TCTGCCCTCCGCCACTAGCCCAAGCAATGTGAGCAACGATCACCATGTTCTCCGCTGCCTAAGCTCTTCTTCTCTGACTC TGTTACGCTCGTCATTCGTCCCCTCCACCCTCTCCAACCTTAATTGCCATCAACTCAATCTTTGACAAATGAAATAACAC TTTCATAT
CDS sequence (LotjaGi1g1v0623800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTATGGCCAATAAAAAAGCATTACTTGTTTCAAACTTTGGTAGTGCCTTTGACTTTGGTTACTATAATTCACCAGC AGAGAAGATGAGAATTCTCGAATTGTCACCACCCTCCGACGGCAACGGTTCTTCAACTCATGATGAAGAACCTTTACCTC AGGATGCAGATTATATTGTTCCGAGTCTCAGCGACGAGCTAGAGACAATGATCTTGGCCAGGTTTCCAAGATCACAGCAC TGGAAACTGTGCTTCCTAAACAAGCGGTTCTTGAATCTATTCAAGAGCGGCGAGATCTACAAAATCAGAAAGGAGTTAGG AATCAAAGAGCCCTCAGTGTTCATGTTAGCCAGTGGTGAGAGCAACTGGTGGGGAATGGACTGGCCTTTCAAGAAAAGTA GGAAGCTCCCTCCAATTCAATCAGATTACAGCTTTGAGTATGGAGATAAAGAATCATTCTCAGCAGGCTCACAACTCTTG GTTTCAGGCAAGGAGATTGATGGCGCGGTTATTTGGCGGTTTGACGCGGAAACAAACGAATGGTTTAAAGGACCATTCAT GATCAACCCAAGGTGCCTTTTCGCGTCGGCTACCAGCGGTTCTATAGCCTTTGTTGCTGGCGGTCTTGACTCACAATCTT ACAGCCAAGTCCTGGATTCTGCTGAGAAGTACAACTCTGAGACACAATCTTGGGAATTTCTCCCAAAGATGAATCAGAAG AGGAAATTTTGCTCTGGTTGTTTCATGGATAACAAATTCTATGTCATTGGTGGACAAGATGAGAATAATAAGGACCTCAC TTGTGGAGAGTTTTATGATGGAAAAACAAACAGCTGGAGCCTAATTCCTGACATGTTGAAAGATATTCCTCCCTCAGTTT CGCAGTCACCGCCTCTCATCGCAGTCGCGAGTAACGAGCTTTACTCGCTTGATGCTTCTTCCAATGAGCTGAAAGTGTAT CTCAAGGGAAGTAATACATGGAAGAAGCTCGGGGGGGTTCCGGTGCGGGCTGATGCTCAGGGAGGTTGGGGTGTGGCGTT CAAATCTCTTGGTGATGAGTTACTTGTTATTGGTGCGCCTTCTGTGTCTCACACAGAGCGTGCTCTGGCAATGTATACTT GCTGCCCTGATCCGACCGCTGAGAAACTGCGATGGAGGCAGATTGAATGTGGTAGCATTCAGCTTAATCACTTCATTCGC AATTGTGCTGTGATGGGAACTTGA
Protein sequence (LotjaGi1g1v0623800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVMANKKALLVSNFGSAFDFGYYNSPAEKMRILELSPPSDGNGSSTHDEEPLPQDADYIVPSLSDELETMILARFPRSQH WKLCFLNKRFLNLFKSGEIYKIRKELGIKEPSVFMLASGESNWWGMDWPFKKSRKLPPIQSDYSFEYGDKESFSAGSQLL VSGKEIDGAVIWRFDAETNEWFKGPFMINPRCLFASATSGSIAFVAGGLDSQSYSQVLDSAEKYNSETQSWEFLPKMNQK RKFCSGCFMDNKFYVIGGQDENNKDLTCGEFYDGKTNSWSLIPDMLKDIPPSVSQSPPLIAVASNELYSLDASSNELKVY LKGSNTWKKLGGVPVRADAQGGWGVAFKSLGDELLVIGAPSVSHTERALAMYTCCPDPTAEKLRWRQIECGSIQLNHFIR NCAVMGT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 406 | 404 | 1.1E-236 | – | |
| PANTHER | 3 | 406 | 404 | 1.1E-236 | – | |
| MobiDBLite | 34 | 55 | 22 | - | – | |
| SUPERFAMILY | 124 | 377 | 254 | 7.45E-38 | ||
| Gene3D | 131 | 392 | 262 | 2.0E-35 | ||
| SMART | 158 | 201 | 44 | 11.0 | ||
| Pfam | 190 | 238 | 49 | 9.6E-10 | ||
| SMART | 202 | 251 | 50 | 7.3E-8 | ||
| Pfam | 241 | 285 | 45 | 8.0E-9 | ||
| SMART | 252 | 298 | 47 | 6.3 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0623800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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