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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0623800 |
| Transcript ID | LotjaGi1g1v0623800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Kelch repeat-containing protein; TAIR: AT3G27150.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9LI89|FBK70_ARATH F-box/kelch-repeat protein At3g27150; TrEMBL-Plants: tr|A0A072TX07|A0A072TX07_MEDTR Galactose oxidase/kelch repeat protein; Found in the gene: LotjaGi1g1v0623800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:117116841..117118058) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCCAATAAAAAAGCATTACTTGTTTCAAACTTTGGTAGTGCCTTTGACTTTGGTTACTATAATTCACCAGCAGAGAA GATGAGAATTCTCGAATTGTCACCACCCTCCGACGGCAACGGTTCTTCAACTCATGATGAAGAACCTTTACCTCAGGATG CAGATTATATTGTTCCGAGTCTCAGCGACGAGCTAGAGACAATGATCTTGGCCAGGTTTCCAAGATCACAGCACTGGAAA CTGTGCTTCCTAAACAAGCGGTTCTTGAATCTATTCAAGAGCGGCGAGATCTACAAAATCAGAAAGGAGTTAGGAATCAA AGAGCCCTCAGTGTTCATGTTAGCCAGTGGTGAGAGCAACTGGTGGGGAATGGACTGGCCTTTCAAGAAAAGTAGGAAGC TCCCTCCAATTCAATCAGATTACAGCTTTGAGTATGGAGATAAAGAATCATTCTCAGCAGGCTCACAACTCTTGGTTTCA GGCAAGGAGATTGATGGCGCGGTTATTTGGCGGTTTGACGCGGAAACAAACGAATGGTTTAAAGGACCATTCATGATCAA CCCAAGGTGCCTTTTCGCGTCGGCTACCAGCGGTTCTATAGCCTTTGTTGCTGGCGGTCTTGACTCACAATCTTACAGCC AAGTCCTGGATTCTGCTGAGAAGTACAACTCTGAGACACAATCTTGGGAATTTCTCCCAAAGATGAATCAGAAGAGGAAA TTTTGCTCTGGTTGTTTCATGGATAACAAATTCTATGTCATTGGTGGACAAGATGAGAATAATAAGGACCTCACTTGTGG AGAGTTTTATGATGGAAAAACAAACAGCTGGAGCCTAATTCCTGACATGTTGAAAGATATTCCTCCCTCAGTTTCGCAGT CACCGCCTCTCATCGCAGTCGCGAGTAACGAGCTTTACTCGCTTGATGCTTCTTCCAATGAGCTGAAAGTGTATCTCAAG GGAAGTAATACATGGAAGAAGCTCGGGGGGGTTCCGGTGCGGGCTGATGCTCAGGGAGGTTGGGGTGTGGCGTTCAAATC TCTTGGTGATGAGTTACTTGTTATTGGTGCGCCTTCTGTGTCTCACACAGAGCGTGCTCTGGCAATGTATACTTGCTGCC CTGATCCGACCGCTGAGAAACTGCGATGGAGGCAGATTGAATGTGGTAGCATTCAGCTTAATCACTTCATTCGCAATTGT GCTGTGATGGGAACTTGA
CDS sequence (LotjaGi1g1v0623800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAATAAAAAAGCATTACTTGTTTCAAACTTTGGTAGTGCCTTTGACTTTGGTTACTATAATTCACCAGCAGAGAA GATGAGAATTCTCGAATTGTCACCACCCTCCGACGGCAACGGTTCTTCAACTCATGATGAAGAACCTTTACCTCAGGATG CAGATTATATTGTTCCGAGTCTCAGCGACGAGCTAGAGACAATGATCTTGGCCAGGTTTCCAAGATCACAGCACTGGAAA CTGTGCTTCCTAAACAAGCGGTTCTTGAATCTATTCAAGAGCGGCGAGATCTACAAAATCAGAAAGGAGTTAGGAATCAA AGAGCCCTCAGTGTTCATGTTAGCCAGTGGTGAGAGCAACTGGTGGGGAATGGACTGGCCTTTCAAGAAAAGTAGGAAGC TCCCTCCAATTCAATCAGATTACAGCTTTGAGTATGGAGATAAAGAATCATTCTCAGCAGGCTCACAACTCTTGGTTTCA GGCAAGGAGATTGATGGCGCGGTTATTTGGCGGTTTGACGCGGAAACAAACGAATGGTTTAAAGGACCATTCATGATCAA CCCAAGGTGCCTTTTCGCGTCGGCTACCAGCGGTTCTATAGCCTTTGTTGCTGGCGGTCTTGACTCACAATCTTACAGCC AAGTCCTGGATTCTGCTGAGAAGTACAACTCTGAGACACAATCTTGGGAATTTCTCCCAAAGATGAATCAGAAGAGGAAA TTTTGCTCTGGTTGTTTCATGGATAACAAATTCTATGTCATTGGTGGACAAGATGAGAATAATAAGGACCTCACTTGTGG AGAGTTTTATGATGGAAAAACAAACAGCTGGAGCCTAATTCCTGACATGTTGAAAGATATTCCTCCCTCAGTTTCGCAGT CACCGCCTCTCATCGCAGTCGCGAGTAACGAGCTTTACTCGCTTGATGCTTCTTCCAATGAGCTGAAAGTGTATCTCAAG GGAAGTAATACATGGAAGAAGCTCGGGGGGGTTCCGGTGCGGGCTGATGCTCAGGGAGGTTGGGGTGTGGCGTTCAAATC TCTTGGTGATGAGTTACTTGTTATTGGTGCGCCTTCTGTGTCTCACACAGAGCGTGCTCTGGCAATGTATACTTGCTGCC CTGATCCGACCGCTGAGAAACTGCGATGGAGGCAGATTGAATGTGGTAGCATTCAGCTTAATCACTTCATTCGCAATTGT GCTGTGATGGGAACTTGA
Protein sequence (LotjaGi1g1v0623800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANKKALLVSNFGSAFDFGYYNSPAEKMRILELSPPSDGNGSSTHDEEPLPQDADYIVPSLSDELETMILARFPRSQHWK LCFLNKRFLNLFKSGEIYKIRKELGIKEPSVFMLASGESNWWGMDWPFKKSRKLPPIQSDYSFEYGDKESFSAGSQLLVS GKEIDGAVIWRFDAETNEWFKGPFMINPRCLFASATSGSIAFVAGGLDSQSYSQVLDSAEKYNSETQSWEFLPKMNQKRK FCSGCFMDNKFYVIGGQDENNKDLTCGEFYDGKTNSWSLIPDMLKDIPPSVSQSPPLIAVASNELYSLDASSNELKVYLK GSNTWKKLGGVPVRADAQGGWGVAFKSLGDELLVIGAPSVSHTERALAMYTCCPDPTAEKLRWRQIECGSIQLNHFIRNC AVMGT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 404 | 404 | 1.1E-236 | – | |
| PANTHER | 1 | 404 | 404 | 1.1E-236 | – | |
| MobiDBLite | 32 | 53 | 22 | - | – | |
| SUPERFAMILY | 122 | 375 | 254 | 7.32E-38 | ||
| Gene3D | 129 | 390 | 262 | 1.9E-35 | ||
| SMART | 156 | 199 | 44 | 11.0 | ||
| Pfam | 188 | 236 | 49 | 9.5E-10 | ||
| SMART | 200 | 249 | 50 | 7.3E-8 | ||
| Pfam | 239 | 283 | 45 | 8.0E-9 | ||
| SMART | 250 | 296 | 47 | 6.3 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0623800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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