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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0624900 |
| Transcript ID | LotjaGi1g1v0624900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nodulin-like / Major Facilitator Superfamily protein; TAIR: AT5G14120.1 Major facilitator superfamily protein; Swiss-Prot: sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4; TrEMBL-Plants: tr|A0A072TXV1|A0A072TXV1_MEDTR Nodulin-like/MFS transporter; Found in the gene: LotjaGi1g1v0624900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:117226897..117231275) extracted from Lotus japonicus Gifu genome v1.2.
ATCACCGCCAGCTCATCCAAATCACTCCCTGTCACCACCCTCCATCTCCAATATTGTCGCATTCTCTCTCTCTCTCTCTC TCTCTCTCTCTTCTTCCTCTGCTTTATCTGTTCCTTCATCTTCCACACCATCACTACCTTCCTCAATCAAAATCAAACCT TGTTGAAGACCCATTTTTCTTCTGAGGATCATCGTTGTTGTGGAAGAACCTGCAGGTCAAAGCCTCAGTGATGAGCGGGT TTCAGGAGAGGTTCTTGTCTCTGTACAAGAGCAGATGGCTGGTGTTTGTGGCTGCAATGTGGTTGCAATCATGGGCAGGT ATTGGGTACTTGTTTGGAAGCATCTCACCAGTAATCAAAAGCTCCCTCAACTACAATCAGAAGCAGGTTGCCATGTTGGG TGTTGCCAAGGATCTTGGTGACTGTGTTGGATTCCTCACTGGGATCTTGTGTGAGATTTTGCCTATTTGGGGTGCTCTTC TTGTTGGTGCTGCTTTGAACCTTGTTGGGTATGGTGTGGTTGGGTTGGTTGTCATTGGTCAACTTCCAGTTCTCCCTTTA TGGGCTGTGAGTCTTTCTTTTCTCTTACCATCATCATCAAGTTAATTGATTGCTGTAATTGTCAATCATGAGTTAGCATC TTTCTTTATTGATTTTGTTTGATTCTTGTTCCTTAAATTAGCATGTTGGGTAAATACTCTGATTCTGATTGACAATTTTG AACTCTTTCAAATTTGTTGTTTTCTTGCTTTGTTTTTACCTTTCTTTCTTTGCTGAGTGGCAGTTAGCATATTTGGAAAT TACCTAAACTATGGGATTGGTTGTACTTCACCTCCTGACTTCAAAATTAGTATGGACCAGATTGATAGATCAGTTTCTCT TTGCTCATAATTGATTCTGAAATCCTGAAGCTACTCAAATGAAACTTCATCCCAGTAGTACTGATTTTAGCTTTAGAATC AATTATAGAAGAATTTTTGAACATGCGCGGAGTTACATGTGTCTGCTCTTTGCCTATCTGACTCTTCTCATTAAAATGAT TTTTCCTGTTTTTTCTACAATTTCTTTGTTTGGTCTCTGGTTTCATTGCCACTAGAATGGACTTTATATTAAAATGTATC TTTTTCTACAAAATGAGCTTTATGGCCTGAAAATCTGGAGTAAAGGGATGTTTCTTCAACTTGGAAAAGGAGTTCAAATG TAAAAGTGTTAGGGTGGGTCTATCGCTGGAGCCAAATAACTTTGCTCTTTACAGACGTGTCTTTTAAACTGAATATTCCA TTTTTGCCTTCTGAGTTTTGGTTTGAGAAATTTTTTTCTTCATCTCTTTTTCTTTTCTTCCCAACGATGATGATCTGTTG CTGCTGTCCATTTGTAGTTTCCCTTTTGTTAAACATTCTATACCAACGTGATGAGTCACAACCTGCATTTAAATAGTGAA ATGAAGTGTGACTGTGTGATAAATGTGGTGCTTACAGTACCCAAGATTTAGAATATTCTCCCTCCACATGCCACAGGCTA CAAGACACTATATACTTTTCTAGTTGATTATACTTCACGTTATTGGATTTGGCTTTCAGCTACTTCCCATGTGGTGTCAT GTGACATGTGGCCACAATTTCTGAAAATTAGGAGATACAGCCAATGCAACTTATTTTACTGTCTTTTTCTTTTCTAGTGT TTCTTAGTATAGTTTACTTGGGAAAATGTTTATGCAACTCCTGAGTCCTGACATAATCAATATGCAAGATGTCTTTAGAA AGTTTTGATGATACACATGAAACTTGGAAACGTACTACTTAAAAGTTGAGTCTTGTGTCTACAAATCTAGAGTTGGGACT GTAGCAGTGATCCCAATTACAAAAGGGGATGTGGATTAACTTTGCTAAAGGATGCTGGTCAAGGCATTGGTAATTTTGGT TTTGATAAAAGATATAGTTGGGTGGCAGGTCAGGAAGCTCGGAACAAATATTTTGAGTTTGTGAGGTCTGATCATGGGCA AGCCTAATTAATATAGTTGATGTATCCTCAGGAGTACGATTTAGTAAATGTCCATTACTCGTTGATGTATAATTCATGAC ATTATAATATAAGAAAATCATCTTATGCACCTTTCAATGATATTTCTTTACCGTATGGTGCAAGTTATTGATTAGTGGCT ACTGGTGTGGTTTGCAGATGTGCGTTCTTATATTTGTGGGAACAAATGGTGAAACCTACTTTAACACAGTTTCTCTGGTG TCTTGTGTGCAAAATTTCCCCAAAAGCCGGGGACCTGTGGTCGGAATTCTGAAGGGCTTTGCTGGGTTGAGTGGTGCAAT ATTGACACAAATATATGCAGTTATCCATTCCCCAAATCACGCATCTTTGATATTTATGGTTGCTGTAGGTCCATCATTGG TAGCAGTAGGTCTAATGTTCATTGTTAGACCTGTGGGAGGTCACAAACAAGTGCGGCCTTCAGACGGCAGAAACTTCACA CTTGTTTATGGCGTGTGCCTCCTGTTGGCTGCTTATTTGATGGGAGTCATGGTTGTCCAAGATCTAGTTGATCTGAGCGA AGCTGTTATCACAATTTTTACAGTGATCCTCATCGTGATCCTCCTCGTCCCAATTGTGATTCCTATCTCATTGAGTTTCG GCCCGGAACAAAAACCTCCAGAGGAAGAGGCACTTCTTCCAGGACCACAGACTAATGAACCAGGAAAATCTCAACTTGAT ACTGATGAAGTAATATTAAGTGAGATGGAAGATGAGAAGCCTAAGGAGGTGGACATGCTTCCTGCACCAGAAAGGCAAAA GCGTATAGCCCAATTACAATCAAGGCTACTCCAAGCTGCCGCAGAAGGAGCTGTGAGGGTTAAGAGGAGAAGAGGACCAC ACAGAGGGGAGGACTTTACCTTGACACAAGCTTTGATTAAAGCAGACTTTTGGCTTCTTTTCATGTCCATGGTCTTGGGT TCTGGATCCGGGTTGACCGTAATTGACAATCTCGGTCAGATGAGCCAGTCTCTAGGATATGACAATTCACATATATTCGT CTCCTTGATCAGTATTTGGAACTTTCTTGGCCGCGTTGGAGGGGGTTACATATCTGAGATTATTGTGAGGTAAAACAACT GTTTCAGTTTCATACTCTGATCAAACATTTAGGTTGTGTTATGTTATATAACCTTTTCAAGACTTCTGATTCAATTTTCA AATTCCATTGTGTTTTGATTGAGCAGGGATCATGCCTACCCGAGACCAGCTGCATTGGCTGTATTTCAACTTATTATGGC AGTTGGGCATCTGTTCATTGGTATGGGATGGCCAGGGTCAATGTATGTCGGCACTTTACTAGTTGGACTCGGTTACGGTG CTCACTGGGCAGTTGTTCCAGCTACTGCATCCGAGCTGTTTGGTTTGAGAAACTTTGGTGCATTGTACAATTTCATTACT TTGGCAAACCCTGTAGGAACTCTTGTCTTCTCTAGTCTAATAGCCAGTAGAATCTATGATTATGAAGCAGAGAAACAAGC TCATGGTGGCCATCTCCATAATATAGGATCACTTGTGTCGAATGTGCTTAATGCCGGTGGGTCACTAAAGTGTGAAGGTT ACATATGCTTTTTCTTGACTTCCATTATCATGGCAGGGTTTTGCATAGTTGCAGCAGGGTCATGCATGTTTCTTGTATTC CGAACTAGAGTTGTTTATGCCAACCTATATGGAAAATCTTCTACTACTAGGGTTCAATAATCAAGAGTTTGTGGACTAAA GTAGGTGGTTTGAGTTATTGAAAGATTGAAGATGCAGAGCCAAGCACATGAAGCAGTCTTGAGTGTGGAAAACAAATCAA AAAGAAAAAAATGAAGGCTCTGTTTTGTTAGATATAGCTGCTACCACGTTGTTGTGTATTCCTTTTCCAATATTTGTGTT ATATTCTTCCTTTTGCAAAGAAACATTTGATTGGGGAAAAAAACTCACCTTACAGGATGAGTGAAATCACCCCTTATTGT TTTTGTTACTAAGGAAATTAAATTTTGTTGTTATCAGTGGTGCTAAGATTATATATTAGTAAAATTCAAAAAAAAAAAAA GATTATATATTAGTATTGTATATTGAAGAGCATTTCATGGTTGCAAAATGTCATGGTCGTTTTACCAGCAGTAAGACAGT GACTTTTCTTTGGGTCCAAAGTGACTGTTTGTTTATTTGTTTGATAATTGCCAATGGATATGGCCTGGAAAATGAATATC ATTCTACTACACGGCCATGTAGATATTTATATGAATGTGCATTTTCTTTTTTGTAATAAAAATTTTGGGTGGGTTTGACC CTGGTTACCATCACCAGACATGGTATGCCTATGGCATCATGAGTCGCTTAAAGTACTAA
CDS sequence (LotjaGi1g1v0624900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCGGGTTTCAGGAGAGGTTCTTGTCTCTGTACAAGAGCAGATGGCTGGTGTTTGTGGCTGCAATGTGGTTGCAATC ATGGGCAGGTATTGGGTACTTGTTTGGAAGCATCTCACCAGTAATCAAAAGCTCCCTCAACTACAATCAGAAGCAGGTTG CCATGTTGGGTGTTGCCAAGGATCTTGGTGACTGTGTTGGATTCCTCACTGGGATCTTGTGTGAGATTTTGCCTATTTGG GGTGCTCTTCTTGTTGGTGCTGCTTTGAACCTTGTTGGGTATGGTGTGGTTGGGTTGGTTGTCATTGGTCAACTTCCAGT TCTCCCTTTATGGGCTATGTGCGTTCTTATATTTGTGGGAACAAATGGTGAAACCTACTTTAACACAGTTTCTCTGGTGT CTTGTGTGCAAAATTTCCCCAAAAGCCGGGGACCTGTGGTCGGAATTCTGAAGGGCTTTGCTGGGTTGAGTGGTGCAATA TTGACACAAATATATGCAGTTATCCATTCCCCAAATCACGCATCTTTGATATTTATGGTTGCTGTAGGTCCATCATTGGT AGCAGTAGGTCTAATGTTCATTGTTAGACCTGTGGGAGGTCACAAACAAGTGCGGCCTTCAGACGGCAGAAACTTCACAC TTGTTTATGGCGTGTGCCTCCTGTTGGCTGCTTATTTGATGGGAGTCATGGTTGTCCAAGATCTAGTTGATCTGAGCGAA GCTGTTATCACAATTTTTACAGTGATCCTCATCGTGATCCTCCTCGTCCCAATTGTGATTCCTATCTCATTGAGTTTCGG CCCGGAACAAAAACCTCCAGAGGAAGAGGCACTTCTTCCAGGACCACAGACTAATGAACCAGGAAAATCTCAACTTGATA CTGATGAAGTAATATTAAGTGAGATGGAAGATGAGAAGCCTAAGGAGGTGGACATGCTTCCTGCACCAGAAAGGCAAAAG CGTATAGCCCAATTACAATCAAGGCTACTCCAAGCTGCCGCAGAAGGAGCTGTGAGGGTTAAGAGGAGAAGAGGACCACA CAGAGGGGAGGACTTTACCTTGACACAAGCTTTGATTAAAGCAGACTTTTGGCTTCTTTTCATGTCCATGGTCTTGGGTT CTGGATCCGGGTTGACCGTAATTGACAATCTCGGTCAGATGAGCCAGTCTCTAGGATATGACAATTCACATATATTCGTC TCCTTGATCAGTATTTGGAACTTTCTTGGCCGCGTTGGAGGGGGTTACATATCTGAGATTATTGTGAGGGATCATGCCTA CCCGAGACCAGCTGCATTGGCTGTATTTCAACTTATTATGGCAGTTGGGCATCTGTTCATTGGTATGGGATGGCCAGGGT CAATGTATGTCGGCACTTTACTAGTTGGACTCGGTTACGGTGCTCACTGGGCAGTTGTTCCAGCTACTGCATCCGAGCTG TTTGGTTTGAGAAACTTTGGTGCATTGTACAATTTCATTACTTTGGCAAACCCTGTAGGAACTCTTGTCTTCTCTAGTCT AATAGCCAGTAGAATCTATGATTATGAAGCAGAGAAACAAGCTCATGGTGGCCATCTCCATAATATAGGATCACTTGTGT CGAATGTGCTTAATGCCGGTGGGTCACTAAAGTGTGAAGGTTACATATGCTTTTTCTTGACTTCCATTATCATGGCAGGG TTTTGCATAGTTGCAGCAGGGTCATGCATGTTTCTTGTATTCCGAACTAGAGTTGTTTATGCCAACCTATATGGAAAATC TTCTACTACTAGGGTTCAATAA
Protein sequence (LotjaGi1g1v0624900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGFQERFLSLYKSRWLVFVAAMWLQSWAGIGYLFGSISPVIKSSLNYNQKQVAMLGVAKDLGDCVGFLTGILCEILPIW GALLVGAALNLVGYGVVGLVVIGQLPVLPLWAMCVLIFVGTNGETYFNTVSLVSCVQNFPKSRGPVVGILKGFAGLSGAI LTQIYAVIHSPNHASLIFMVAVGPSLVAVGLMFIVRPVGGHKQVRPSDGRNFTLVYGVCLLLAAYLMGVMVVQDLVDLSE AVITIFTVILIVILLVPIVIPISLSFGPEQKPPEEEALLPGPQTNEPGKSQLDTDEVILSEMEDEKPKEVDMLPAPERQK RIAQLQSRLLQAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLLFMSMVLGSGSGLTVIDNLGQMSQSLGYDNSHIFV SLISIWNFLGRVGGGYISEIIVRDHAYPRPAALAVFQLIMAVGHLFIGMGWPGSMYVGTLLVGLGYGAHWAVVPATASEL FGLRNFGALYNFITLANPVGTLVFSSLIASRIYDYEAEKQAHGGHLHNIGSLVSNVLNAGGSLKCEGYICFFLTSIIMAG FCIVAAGSCMFLVFRTRVVYANLYGKSSTTRVQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 15 | 15 | - | – | |
| PANTHER | 4 | 588 | 585 | 0.0 | – | |
| PANTHER | 4 | 588 | 585 | 0.0 | – | |
| SUPERFAMILY | 7 | 201 | 195 | 3.53E-10 | ||
| CDD | 14 | 566 | 553 | 3.68176E-109 | – | |
| Pfam | 15 | 262 | 248 | 3.5E-90 | ||
| Phobius | 16 | 36 | 21 | - | – | |
| TMHMM | 20 | 42 | 23 | - | – | |
| Phobius | 37 | 78 | 42 | - | – | |
| TMHMM | 65 | 87 | 23 | - | – | |
| Phobius | 79 | 102 | 24 | - | – | |
| TMHMM | 97 | 119 | 23 | - | – | |
| Phobius | 103 | 107 | 5 | - | – | |
| Phobius | 108 | 127 | 20 | - | – | |
| Phobius | 128 | 147 | 20 | - | – | |
| TMHMM | 145 | 167 | 23 | - | – | |
| Phobius | 148 | 168 | 21 | - | – | |
| Phobius | 169 | 173 | 5 | - | – | |
| Phobius | 174 | 194 | 21 | - | – | |
| TMHMM | 177 | 199 | 23 | - | – | |
| Phobius | 195 | 213 | 19 | - | – | |
| TMHMM | 212 | 231 | 20 | - | – | |
| SUPERFAMILY | 213 | 577 | 365 | 8.5E-20 | ||
| Phobius | 214 | 236 | 23 | - | – | |
| Phobius | 237 | 241 | 5 | - | – | |
| TMHMM | 241 | 263 | 23 | - | – | |
| Phobius | 242 | 264 | 23 | - | – | |
| Phobius | 265 | 362 | 98 | - | – | |
| MobiDBLite | 271 | 291 | 21 | - | – | |
| Gene3D | 351 | 579 | 229 | 2.3E-7 | – | |
| Phobius | 363 | 381 | 19 | - | – | |
| TMHMM | 363 | 381 | 19 | - | – | |
| Phobius | 382 | 395 | 14 | - | – | |
| Phobius | 396 | 418 | 23 | - | – | |
| TMHMM | 396 | 418 | 23 | - | – | |
| Phobius | 419 | 429 | 11 | - | – | |
| TMHMM | 425 | 447 | 23 | - | – | |
| Phobius | 430 | 449 | 20 | - | – | |
| Phobius | 450 | 454 | 5 | - | – | |
| TMHMM | 451 | 473 | 23 | - | – | |
| Phobius | 455 | 477 | 23 | - | – | |
| Phobius | 478 | 488 | 11 | - | – | |
| TMHMM | 486 | 508 | 23 | - | – | |
| Phobius | 489 | 509 | 21 | - | – | |
| Phobius | 510 | 550 | 41 | - | – | |
| Phobius | 551 | 574 | 24 | - | – | |
| TMHMM | 552 | 574 | 23 | - | – | |
| Phobius | 575 | 593 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0624900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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