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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0625500 |
| Transcript ID | LotjaGi1g1v0625500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT5G41830.2 RNI-like superfamily protein; Swiss-Prot: sp|Q9FM89|FDL38_ARATH F-box/FBD/LRR-repeat protein At5g56420; TrEMBL-Plants: tr|I1KZ45|I1KZ45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0625500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:117279954..117281644) extracted from Lotus japonicus Gifu genome v1.2.
GCCCAATAAGTTTAAACATCAAACCAGATTAAGAAGTCCAACAAATTCAACCTCACTTGGTTAGCATTACTAGCTTCCAG CGAGTAGACTTTGTCAAAAATAAAACCGAGTGTTTATTGGTGAACACATAGAATAGAACCTTAATAAACCCTAGAGTCGA TCAAAATATTCAGTGTGAACCAGAGTGTGGAGTAGACAGGTTATAGTAACAATAGTTGATAATAGGATTAGCAATTCACT AGATGATGTTCTCTGTCACATTCTTTCGTTCCTTCCTACTGAACATGCTTTTTCCACAAGTCTTGTGGTCAAGAGTATGG AGTAGACAGATTACAGTAGCAATGGATGATATGATTAGCAATTTACCAGATGATGTTCTCTGTCACATTCTCTCGTTCCT TCCAATTGAAGATGTTTTCGCTACAAGTTTTGTGTCCAAGAGATGGAGACCACTCTGGCTTTCAGTCACCAATCTGGATT TTGACCAAGATAGATTTACTCGATCTGGGAATAGATCATTCTCTTCCTTTATCAAATTCGTAGAGGCATCCATTCTCAGA CTTGGTATTCACCAACCCATCAAAACGTTTCGCCTCAAATGTTCCACGTGTTCAGTTTCCCATGTTAAGACATGGTTGAA AACCGCAGCAGACCGCAAAGTTGAGAATCTCCAAATCAATTGTTTGGCCTTTTGTCAGGACTTACCCTGCTCCATTTTCA GCATCACAACCCTTGTTGTTCTCCAGTTGAAATGCGTGGCTTTTAAGGGTTTTTTTTCTGTTGAACTTCCCTTACTCAAA ACTCTGCATTTGGACCATGTTACTTTCTTAAAGTCTCAACATTTTGCAGACCTTCTTAATGGTTGTCCATTGCTTGAAAA TTTGGAAGCAAAAATCATATCTTCTGCTTATGACCCTTCATCTGAGAGTGAGACAAAGTTTACAACTTTACCCAAGTTGG TCAGAGCAGATGCTTTTACCGTATGGATAGGTTTTGGTATTCCTGTGAGAACTTTTTGCAACGTAGAGTTTCTGCGCATA GACCGGGTTTGTAATGATGTTTTTGTAATCAATTTAGTTTGTAAATGTTATCAATATTTCTGATAAATTTTTTACTACTC TTTGCAGTTCTGTGATGTAGACATTCCTATATTTCCCAATTTAATTCGTCTGGATCTCATCTTTGAAGTTGGAGTCTATA GTAAATGGGAATCAGTGCTTGATATGCTCAATCATTGCCCTCAACTTCAAATTCTTGTCCTTGAAAACCAATATGCTTGG CCAAACACACATGTTCGTGAATGCTTTTCTTCACAGCTCAGGAGGTGCATTCTTAAAAAATTTAGCGGCATGAAATCTCA GATGAGATTTGCTGAGCTTGTTATGCAAAATTCAACATTGTTACATACCATGAAAATTTTCAGTAACCCTTTCCTATCTC ATGAGAAAATTCTTGAAATGAAAAAAGAATTGGACTCATGCACATGGAGCTCTATATCCTGTGAAATTTTATTTATGTAA TTTTTATGCTTGTTAGTATTTGAAAATTATTTCCAGATGACTGCAATTGTATTCAGTACTGCATATATTATATCTGCTGG ATTTGGTGCTTTTTTTGAAGGACATATGCTGTGTTTTGCTGTTGGTACATCAGTATTTATTAAATATAACAGAAACTGAA ATAGGAATAGA
CDS sequence (LotjaGi1g1v0625500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGTTCTCTGTCACATTCTTTCGTTCCTTCCTACTGAACATGCTTTTTCCACAAGTCTTGTGGTCAAGAGTATGGAG TAGACAGATTACAGTAGCAATGGATGATATGATTAGCAATTTACCAGATGATGTTCTCTGTCACATTCTCTCGTTCCTTC CAATTGAAGATGTTTTCGCTACAAGTTTTGTGTCCAAGAGATGGAGACCACTCTGGCTTTCAGTCACCAATCTGGATTTT GACCAAGATAGATTTACTCGATCTGGGAATAGATCATTCTCTTCCTTTATCAAATTCGTAGAGGCATCCATTCTCAGACT TGGTATTCACCAACCCATCAAAACGTTTCGCCTCAAATGTTCCACGTGTTCAGTTTCCCATGTTAAGACATGGTTGAAAA CCGCAGCAGACCGCAAAGTTGAGAATCTCCAAATCAATTGTTTGGCCTTTTGTCAGGACTTACCCTGCTCCATTTTCAGC ATCACAACCCTTGTTGTTCTCCAGTTGAAATGCGTGGCTTTTAAGGGTTTTTTTTCTGTTGAACTTCCCTTACTCAAAAC TCTGCATTTGGACCATGTTACTTTCTTAAAGTCTCAACATTTTGCAGACCTTCTTAATGGTTGTCCATTGCTTGAAAATT TGGAAGCAAAAATCATATCTTCTGCTTATGACCCTTCATCTGAGAGTGAGACAAAGTTTACAACTTTACCCAAGTTGGTC AGAGCAGATGCTTTTACCGTATGGATAGGTTTTGGTATTCCTGTGAGAACTTTTTGCAACGTAGAGTTTCTGCGCATAGA CCGGTTCTGTGATGTAGACATTCCTATATTTCCCAATTTAATTCGTCTGGATCTCATCTTTGAAGTTGGAGTCTATAGTA AATGGGAATCAGTGCTTGATATGCTCAATCATTGCCCTCAACTTCAAATTCTTGTCCTTGAAAACCAATATGCTTGGCCA AACACACATGTTCGTGAATGCTTTTCTTCACAGCTCAGGAGGTGCATTCTTAAAAAATTTAGCGGCATGAAATCTCAGAT GAGATTTGCTGAGCTTGTTATGCAAAATTCAACATTGTTACATACCATGAAAATTTTCAGTAACCCTTTCCTATCTCATG AGAAAATTCTTGAAATGAAAAAAGAATTGGACTCATGCACATGGAGCTCTATATCCTGTGAAATTTTATTTATGTAA
Protein sequence (LotjaGi1g1v0625500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMFSVTFFRSFLLNMLFPQVLWSRVWSRQITVAMDDMISNLPDDVLCHILSFLPIEDVFATSFVSKRWRPLWLSVTNLDF DQDRFTRSGNRSFSSFIKFVEASILRLGIHQPIKTFRLKCSTCSVSHVKTWLKTAADRKVENLQINCLAFCQDLPCSIFS ITTLVVLQLKCVAFKGFFSVELPLLKTLHLDHVTFLKSQHFADLLNGCPLLENLEAKIISSAYDPSSESETKFTTLPKLV RADAFTVWIGFGIPVRTFCNVEFLRIDRFCDVDIPIFPNLIRLDLIFEVGVYSKWESVLDMLNHCPQLQILVLENQYAWP NTHVRECFSSQLRRCILKKFSGMKSQMRFAELVMQNSTLLHTMKIFSNPFLSHEKILEMKKELDSCTWSSISCEILFM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 10 | 10 | - | – | |
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| Phobius | 11 | 22 | 12 | - | – | |
| Phobius | 23 | 27 | 5 | - | – | |
| Phobius | 28 | 398 | 371 | - | – | |
| PANTHER | 35 | 395 | 361 | 2.6E-77 | – | |
| ProSiteProfiles | 35 | 83 | 49 | 11.776 | ||
| PANTHER | 35 | 395 | 361 | 2.6E-77 | – | |
| SUPERFAMILY | 35 | 91 | 57 | 1.28E-13 | ||
| Pfam | 38 | 72 | 35 | 3.3E-11 | ||
| SMART | 41 | 81 | 41 | 5.8E-7 | ||
| SUPERFAMILY | 75 | 389 | 315 | 3.57E-7 | – | |
| Pfam | 185 | 209 | 25 | 0.0011 | ||
| Pfam | 322 | 365 | 44 | 2.0E-7 | ||
| SMART | 326 | 398 | 73 | 0.0035 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0625500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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