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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0626800 |
| Transcript ID | LotjaGi1g1v0626800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Squamosa promoter-binding-like protein; TAIR: AT5G50570.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; Swiss-Prot: sp|Q49I57|TGA1B_MAIZE Teosinte glume architecture 1; TrEMBL-Plants: tr|A0A151SPS7|A0A151SPS7_CAJCA Squamosa promoter-binding-like protein 16; Found in the gene: LotjaGi1g1v0626800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:117553121..117556785) extracted from Lotus japonicus Gifu genome v1.2.
GAATGGCATGGTCACAACTGGCTTAGGTGCCATGTGGTCATTCTCACACTTTGTGTGTTTTTCTTTGTCGTAGTACTTTT TCATTCATTACTATTGTTTATTGTCTGGAAAGTTGCAGGTACAGTCTAAAGCTGTGGTCACTTTCTCCCTTCTCTACCAT GTCCAATTGGCCACTACCACTATTTATTCTAGCCGATTTCGATATTTAACTATTTTTTTAAGCCACAAGTATTTTAAACC ACAAGTATGTTTTACCATGACAATAGTGTTCGAGTCGGATATGATCATTTCGAACTGCAAAGCTCGGCAGCTTGCATAGT AAGTATTTAACACAACTACATTCATAAATTCGAACTTGAAGATGAGATCTCTACTTAGGATAAAGCAACCTATGTGTGTG TAAAGATTGAACCCAAAAAAATAAAAACAATGCCAAAGGAGAGAGACTGATTTACCAGAAAGAGAACAACTGACCAAAAA AAGAAAGCAACAGATCTCACTGTTTCCATCATTTTTTGTTGAGTAAAGGTAATGGGTTCCTATTGATCCAGCTTCTAACT CATGCTGGTGACCTACTTTTTCACTCTAACAAGTTCTTTCTCTTCATCTACTCCTTCAGATAGAAACATCAAACATTGGT CCTCTCCTCCTGCTTCTCTGCCCATTCTCTTGGAGGCTCATCTTCTTCAGCTATGAGAATCTAGGAGATGTAAGTTTTAC AAAACTGTGTGTGTTAGGTGAAGTTGGTATCTTAAAAATAATTTGTCAATCAAAAACCTTCTGCTATTTTTATTCTATTA CAGAAAGCAACAAAATTCCTGAATTGACATTAATTTATTTTCAACACCCATGGGTGCCTAGTGGCTTTAGGTTGAGGTGA CATTCAATTTGGGTGTTTCAGTATATCTTTCAATATCCTTATGCTTTATTTTTTCTTTGTTCATTCTTTATGATTATTTT CCTTTATATTTTATTCATGATGGCTGTCATGGATTCAATTTAAAATTTTGAGAACTGGGTATTTATTCCCTTGACTTCCC CTGAAAAACCCAATTCACATTTTGGGGTTTTATTGTTTGATTGATCCTTTGATCCTATTTTGGGGGTTCTCAAGTCAAAG TCTTCAACTTGTGGTGAGTTCTGAATCTTCTGATTGATGTGTGAGTGTTTTACACAGTGTGGGAGTAATTAGAGGGCATG GATTGGGACTGGAAAGAGTTTGCTTGGGATCCATCTGGGTTGGAGCTAGCTATTGGTGGCTTGGAAGGGCAAAAGAATGA AGAAGCTACAGTGGATTTGAGGCTTGGTGAGGGTTCTGATTCAGTGGAAAAATCAGCCCCAGATACACCAAAGGATCCAG AAGAATCAAAAGCTATGTCATCATCACCTTCTGGATCATCAAAACGATCCCGTCTGCATAATGGATCGCTGAATATGGCT TGCTCGGTTGATGGATGCACTTCTGACCTCAGTGATTGCAGAGAGTATCATCGGCGCCACAGGGTCTGCGAAAAGCATTC CAAAACCCCTGTTGTGTTGGTAGGGGGGAAGCAGCAGCGGTTCTGCCAGCAATGCAGCAGGTATGGATTGAAGTTGCTTA TGTGGGTGTTGGAAGTTTGAGGTTGGGAATTTCTTCAATTCAATTGTTTTATAAGTGTTTTGAGGTTGTTTTGTAACATG GGCTGGTGCCGAATTGTTGTAGGTTTCACTCACTCGGGGAGTTTGATGATGTTAAAAGGAGTTGCAGGAAACGTCTTGAT GGACATAACAGACGTAGGAGGAAGCCACCGCCCCCATCTCTTTTCATGGCTGCTGAGAAATTCATGTACAATTACAAAGG TTTGTGTGTGGCATCTCTAGATTCTATGAATTTTTTCTGTTGATGTTCAATCTTAATTTTGCATAGAGTTGAAAGAGGGA ACCTGGAAGAAGATATGATTGAATTAATATTACAGAATCAACTCCCCACTCCAGATAGAAAGAAACTAGAAATTAAAGTC CCCTCTTTTCAGTTGGTTTGTGTTAGAATTAGAAGTTAGAACCATGCTATAAGTCCTTTCAAATTTTCACAGTGAACTGA ATTCTATGCTATGATTAAAATTAGCCTAAGCTGTTTGGTTAAGTTTCATGATAGAGGATGTGAATATGTGATTATCGATC AAAATCCTCTCATGTGGAGACTTCCTCATGTTGAAATTTTGTGTCTGTCTTGAGTTTTAGTACAAGAAAATTCATGTAGG AATATGAAATTCCAGTCATGGTTCGCCTGGAGTCCAATTGTGAGTTAATTATATGCTCTTGATTACTGCTAGCATCTACC TTTCCTCGTCATTATTGCTTGTTTTTCACTTGTTTAATTAGTACTTTTGTCTCTGTCTTGCCTTTCTGCAACTTAGGACC AAGAATCCTGCACTTTGGTAGCCCTCAGGCATATGCAAACACCATAATGAGAAACATGTGGCCTACCCCTACCAAAACGG AAGCTGAATCTGGTTATGATCATCACCGGCTTCTGTATCGAATCGACAAGCACAGACAGGATAAGGGACATCCTGATCTT TGGCAAGAAAATGTCCCAAAAGCTGGAATTGGTAGTGAAGCAATGCATGGAACTACCATCTCTCAGCCTAACCTTGGTGC TCCCAATATTGCCCCATCTGCAAGTGGAAAGGGCAATAGGAAGCTCTCTTCAGACGGCAAACCTGGATCTTTCGACTCAG GTTGTGCTCTCTATCTTCTGTCAACACTTCAATCACAAAGTCCAGAGTTGAGTTTGGTGCAGTCCAGCATCACCTGTCCA GCGCAGTCTCCTTCAGGATCTTTGGATTTCGGCGCCGTGAACGAGTACTCGGGCTTGGGTAAGGCGAAAGATAAGCCTCC TGGTCCAGTATTTGTTCTGGATGCAAACACAACCAACCTTCATTGCAATGGAATGCTGCAAACGGGGCCTGATGGATTGG TGGAAAATGAGGACTCACTCACCCTTCCTTTTGTCTGGGAGTAGGTTGTGAGTGGAGTTGTGTCTTTGGTAAATTTATGG AGTTGTTGGTCTTCAAAATAGAATCTTGTACTCCAATAATTAAGCTTAGACTTGTTGAAGCTTTCAGGGGTCGTTGTTCC CTTCAACTCTAATTTATAGCTATGTTTGGGTCAACTTATCTTTCTCGGGATCAAATCTAGCACTCAAAAGCTACTCATGG AAGCTTCTCTCAGACTTGATTTTAGCTCTAAAATCATCTGTAGAAGGATTTCAAAATATGCTAATAGAAGCATAATTGAT TTTGTGATGCGTTTGGATCAGCGTTGTCAAAATCAATTTTGAATTGAATTTTTTGGTGAATGGGAGACTTTTTTGAATTG AATTGATTATGGCAAAGTGAATTGAAGTGGAAGTATATAATTTATATTTGATATGTTTATGGGAAAAGTGATTTCTATAT AGTAATGATCTGAAATCCGGTTATGAAATTTCAAATTAGATTATGTCTACTGCAAAAGCTACTTTCTTTAGCTTCACTGC AGAATTGATTTTGAAGCTAGTCGATTGTCAAACATCTACATAATGACATAAAATCAATTTTGGTCAATGAGAATTCTTTT CACTCCCAAACTTAAAACCAAACACACCTTGCTGCAGAGTATGTGATGGATTATCTGTTATCAAC
CDS sequence (LotjaGi1g1v0626800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTGGGACTGGAAAGAGTTTGCTTGGGATCCATCTGGGTTGGAGCTAGCTATTGGTGGCTTGGAAGGGCAAAAGAA TGAAGAAGCTACAGTGGATTTGAGGCTTGGTGAGGGTTCTGATTCAGTGGAAAAATCAGCCCCAGATACACCAAAGGATC CAGAAGAATCAAAAGCTATGTCATCATCACCTTCTGGATCATCAAAACGATCCCGTCTGCATAATGGATCGCTGAATATG GCTTGCTCGGTTGATGGATGCACTTCTGACCTCAGTGATTGCAGAGAGTATCATCGGCGCCACAGGGTCTGCGAAAAGCA TTCCAAAACCCCTGTTGTGTTGGTAGGGGGGAAGCAGCAGCGGTTCTGCCAGCAATGCAGCAGGTTTCACTCACTCGGGG AGTTTGATGATGTTAAAAGGAGTTGCAGGAAACGTCTTGATGGACATAACAGACGTAGGAGGAAGCCACCGCCCCCATCT CTTTTCATGGCTGCTGAGAAATTCATGTACAATTACAAAGGACCAAGAATCCTGCACTTTGGTAGCCCTCAGGCATATGC AAACACCATAATGAGAAACATGTGGCCTACCCCTACCAAAACGGAAGCTGAATCTGGTTATGATCATCACCGGCTTCTGT ATCGAATCGACAAGCACAGACAGGATAAGGGACATCCTGATCTTTGGCAAGAAAATGTCCCAAAAGCTGGAATTGGTAGT GAAGCAATGCATGGAACTACCATCTCTCAGCCTAACCTTGGTGCTCCCAATATTGCCCCATCTGCAAGTGGAAAGGGCAA TAGGAAGCTCTCTTCAGACGGCAAACCTGGATCTTTCGACTCAGGTTGTGCTCTCTATCTTCTGTCAACACTTCAATCAC AAAGTCCAGAGTTGAGTTTGGTGCAGTCCAGCATCACCTGTCCAGCGCAGTCTCCTTCAGGATCTTTGGATTTCGGCGCC GTGAACGAGTACTCGGGCTTGGGTAAGGCGAAAGATAAGCCTCCTGGTCCAGTATTTGTTCTGGATGCAAACACAACCAA CCTTCATTGCAATGGAATGCTGCAAACGGGGCCTGATGGATTGGTGGAAAATGAGGACTCACTCACCCTTCCTTTTGTCT GGGAGTAG
Protein sequence (LotjaGi1g1v0626800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDWDWKEFAWDPSGLELAIGGLEGQKNEEATVDLRLGEGSDSVEKSAPDTPKDPEESKAMSSSPSGSSKRSRLHNGSLNM ACSVDGCTSDLSDCREYHRRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLGEFDDVKRSCRKRLDGHNRRRRKPPPPS LFMAAEKFMYNYKGPRILHFGSPQAYANTIMRNMWPTPTKTEAESGYDHHRLLYRIDKHRQDKGHPDLWQENVPKAGIGS EAMHGTTISQPNLGAPNIAPSASGKGNRKLSSDGKPGSFDSGCALYLLSTLQSQSPELSLVQSSITCPAQSPSGSLDFGA VNEYSGLGKAKDKPPGPVFVLDANTTNLHCNGMLQTGPDGLVENEDSLTLPFVWE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 20 | 375 | 356 | 5.0E-200 | – | |
| PANTHER | 20 | 375 | 356 | 5.0E-200 | – | |
| MobiDBLite | 33 | 56 | 24 | - | – | |
| MobiDBLite | 33 | 74 | 42 | - | – | |
| MobiDBLite | 57 | 74 | 18 | - | – | |
| Gene3D | 74 | 143 | 70 | 8.5E-32 | ||
| ProSiteProfiles | 79 | 156 | 78 | 31.71 | ||
| SUPERFAMILY | 80 | 160 | 81 | 1.57E-38 | ||
| Pfam | 82 | 155 | 74 | 1.1E-30 | ||
| MobiDBLite | 244 | 275 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi1g1v0626800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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