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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0630900 |
| Transcript ID | LotjaGi1g1v0630900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Translocon-associated protein subunit beta; TAIR: AT5G14030.1 translocon-associated protein beta (TRAPB) family protein; Swiss-Prot: sp|P23438|SSRB_CANLF Translocon-associated protein subunit beta; TrEMBL-Plants: tr|I3SDS8|I3SDS8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0630900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:118447519..118452278) extracted from Lotus japonicus Gifu genome v1.2.
CTTGTAATAATATTTGTATTTGTCTGCATCCATTTGATACGAACCCTAGTGGTTGAAGCGTGTCTCAAATCACATAAACA TACACATTACATTTCCGAGAGTCACACGATCCACACTCTCTCTCTCTATCTTCCTCATTGACTCTCTCTGTTTCTCTCTC ATCGGATGCCAATGGCGGATCCAATCTCGAAGGCTCTGATTCTCCTTTCGATCGTAGCTTCGTTGTTGCTATGCTCCCAC GCTTCATCCTCCTCTGACGTTCCCTTCATCGTCGCGCACAAGAAGGCCTCCCTCAACCGGCTCAAGTCTGGCGCTGAAAG GGTCTCCGTCTCCATCGATATCTACAACCAAGGATCTTCGTAAGCCTCGATCTACGACCTGTGGTTGATTGATTCTTTGT TTCTTTTGTTTTCCATTTCTGTTTTTCAATGTGTGAGAGATCCCAATTCAATTCCCCTTTTGCATGCATGCCCATTTTTT GTTTTTGTTTTTAAGATGGAATTTGAGTTTTGGGTTTCGTCAATTATGCTGTTTAGCTGATGAAATTCTGTTAAAGTTAT GAAATTTGTGTTGGATCTCTGTTTTTGTTGACGTGATTGGGAAATTGAAGAAATGGGTAATCTTGGTTTAGCTGTGAAGG AGATTGAAATAAGAAAAATTGGTAATTTTTGTTTATAAGCGTTTTTTGAAGCATCTGGGGCATGCTCCTTTAGCTTGCAT GTGTTGGTAATTGGAATCAATTATGGTTTTGCTCTCTTGGTTTCACAACGCTGGAGTTCTTGCTTGTTTGATTGGATGTA TTTTTGTAAGAAATGTAGAGTCAGAGTTGATTTGTAATTTGATGTAATTGATGTGAAAATTTGGACATTTTGGTGGCTTG ATTGGAGTTCTAAGGGCATATGCGTGTGTTACCTCTGATTGGATAAGTAGGCTATTCAAAATGGGGGAATTAGATTGCAA GTTATATTGCAAAATGCGAAATGAATATTGTCTTAATGGGATTTGGCTGGAAGGCCCTACCAAAATGTAAAATCTCTTCC TGTGTTTTATGGGATTTAGTTTATGATTGACATGGACCATGGCAGGCTAGTAGAGAGGGTGTAAATTGATAGATTGGATT TTGTGATCTGCCACTTCTGTTCACTCATTGTTTTGTTTCCCGTTTGCAAGATCTCTTCGGTTCCTTTATTTCTCTCATAA GAGGTTGGCAAATATGTGAAAACAAGCCTTGTAATTCCTTGTTTGACTTGTTAAGTAGTTGAATTTAGGATTTTCTGTTA TTCAAAAATGAAGAACTACATATTTTAGGATATCTATTTTTATTTGGTAACCTGTGTTTGCGATCAATTTTTATTTATCC TTTGTACTTACCCTTTTTCTTCCTTTTCTTAAGGACTGCATATGACATAAGTCTAGCAGATGATACTTGGCCAAGTGATC TTTTCAGTATAATCAGTGGCAGCACATCGAAATCATGGGAAAGGCTTGATGCGTGAGTTTTGTATTAATTGCTGTATCTT TCTTCTACAATCAGTTGCCTCCTCCTTTTTCTGCTCTGCTGTATTTTGGTTCATTTCTTTTTACAAGCAAATCATCCTAT TTTTAGGGGTGGCATCCTCTCCCACACATTTGAGCTGGAGGCAAAAACAAAGGGAGTATTCTCTGGTCAACCAGCTGTCA TCAAGTTCCGCATCCCCACTAAGTCTGCTTTACAGGTTAAATATGTATTTGCATTATTTTCTAATGTCAATTTTCTTTTC TGGTTAGAAAACTTTTGTTCTCATCATGGTTTTTTCTTTTTAAATATTAGGAGGCATTCTCAACTCCCATATTGCCTTTA GATGTTCTTGCTGACAGACCTCCTGAGAAGAAGTTTGAATGGGTACGTCTCTTGTAGACTTGACAATTACATTAATTGAT TCAGAATTCTTGGCTGCTTACTGACGCATTGCTTTTTTTGTTTGTGTTCATATTTGGCCGGACATGATTTCTCAGGCTAA GGTATGGAAAATTATTTGATGCTCTTTGTAATTGCATGTTTATAATATTTTTGGAATGACGCAAATTTTAATTAACATGG GAGATACCTAATTTGGTAGTTTGTTTTGCTTATCATTTTTCAAACATGATGAGATGGATGGTTCGATTAGCTGTTTGTGG AATAATGCATGAAATAAGAAAATAAAGTTAAATCTGTTTTTGCTTACTATTTCACTTTTCTCTCCAGACGTGTTGCACCA AGGAAGTGAAGCCACAGCTTAAAATATTTTTCAATGATATGTTATTTTCCACTATTGTCTTGATATAACAGTGTATAGTC TTTACCTTAATGTGAAAATGTTATTGTCCACAGAGATTGCTGGCTAAGTATGGATCTCTATTCTCAGTGATCTCCATCAT GGTTCTGTTTGTGTACCTGGTCGCAACACCATCGAAATCGGGTGCCAAAGGAAGCAAGAAGAAGCGTTAATCTGTAACAA AGTAATACATTTGCAATCAGGCATTTTGCAGGCTAAAGCATGACATTCTGTCAGTGGTCAGTTTTTACCTAGTTAGAGCA TCTGTTGTTTTTGAACTTTTTTGAATGAATGGTCAAATGAGTTAGTGAGAGAACAGATTAATTTCATTACGGCATAGCCT GAACAGTTGTTTTCAGTTCTCCCTGGACTGGATGGATCTTTTAGCGAGCAAAAGTATATTAATTAATCACCTGATCTCAT AGCTATTTTGGATTGCATACCTTATTTTATGTTCTTAAGATCTTTACGTTCGATATCTATGGTTGAAATGTTACCAATTC AATTAAAACTACAAGCTTGTAGGCTTGTAGCTGGCCTTGGTAGAATCAGGGGCCTCATTATCCTCCCTCCATCCCTCTCT CCCTTTCGACAGTCTACGGGCTATTACCTTCCTTTAGAGTTTGGGTATACTACCTTTCCTGGTAGTTAATTTTGTAACAT TTGTGATCGAACAAATACAATATAACAACAAAGTGAGGTATTGGTATGTGATATAGAGTCCTTCCAACATTGTTTCCTCC ATTGCCTTTTTCGTTAACCCTGGAGTTTGTCCTCATTGTGTCTCCTTTTGCTTCTTGCTGTTGCTATGAGTTCTAGCTTG CTTTGTAGTTCGTTCTCAGTTTTTCTTTTTTAGATTTTAAAATTAGTTGAAGTTTTTCTTTACTTTTCATTTCCAAAACT TGCTGTCCAAAGAAGTTGTCTACTATCTTGTTTAGGGTTAATTCAGAAAATTCTTGATTTAGTCGTGCATGTTTTGAAAT CTTCTACAATTGATTCTAGAGTCAAAATCAATTATGGGAAGAAGTTTTTGTGAGTAGCTTTTGTGAATATTAATAAACTT CAAATAGACTCTTTATTGCCAATGTCATGTAGATAGGAGTGGCTACATGGTGGGGTGGTACCTAACCTTTTTTTTGTGGT ACAGACTGAAATTTATGTGTCACAATTGCATAGGGTTTGTGTTCACGTATTTAAAGATTTGATTAAAAATATTAAGTTGA CAGGGATTCATGTTTTTTTTTTTTATAAGCAAATTTTGCATTAATGGGAGTACAAGGGGTACTCAACCCTTAATACATAG TAGAGTCAAGAACAAATTAAAAACAAAGAAGCTATCCAAAACAGATAGCTAAAAAGATAACAAAATCCCTTTGAAACCCA ACCTGACCACATTAAGCTATTAAATTGTATAACAGTACCCAAACCAACCAAGAAGACGAAACAGCAACACAATGCAGGAC CAGCTACAAGTAATTAATCCAGCACCACAACATATCAGATAAAATTCCACAGATGCCAAAACAAATCAACTTGGACCTCA GACATGTTGAATGCACAGTAAAGGTTCAGCATACCACTCAGCCATGGAATAAGTAAAACTCTTAATAAGTGCCTTCACCC ATTGCCAAGACCTCCATTTAATTAGTTCTAATGCTGTCAGAATACAAACGACACCAGCTCTAAAAATTAGCTCATTCCTC AGAAGCCAAATTGTCCATACTGTTGCCAACCATATTGAAAACATTCCCCTGTAATTAGCATTACTCCAACCTTGCTGAAA TTGAAGAATGTGACTCTTAGCATCTTTTGGAAGCATAGTAGAGACTCCAAGCCACTTATACACTTCCTCCACACATCCAT GGAAACCGGGCATGAAAACAAAAGATGAGAACAAGATTCTGCTTCAATGGAACAAAATTTACAGACCGCATCTTCTCGAG AAGTCAGCACCCCCTCTTAAGCAAATTGTCTGATGTGGCCAATCTATTTAACAAACACCTCCAAGCAAATGCCTTCACAT TAGATGGCGCAAGTGCCCGCCAAACAATTGAAAACACAGTATCTGGCTCAGGTAATATTGGTCCCTGCAAAAATAAATAA GCTTAATTAACTGAATAAACACCCTCGTGTTTGGCAACCACACCCACTTGTCAGGTACCCCTTCTGTTAGCTGGGCCAAG GATAGCTCTTGGCGCAACTCCTCTAGCCACCCCATCTCTCTCCCTACCAGTCCCTTGGTTCCATCGTCCGCAGTCTGAAA TACAAATACAACAGGGATTCATGTGATGGGTATTAGGATATTTGCTTCCAGTCCAGAATATTGATACTTTATCAGGTTCA GTGGGCTCTTTTAAATATCCGTGCCGATGTGCGTGTATGTTTTCTCTATAAATTATTGATCTCTTTTCAACCCCGTTGTG CTACTGAGGATAAAAGACGTAGACTAAAAATCTTACATAT
CDS sequence (LotjaGi1g1v0630900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAATGGCGGATCCAATCTCGAAGGCTCTGATTCTCCTTTCGATCGTAGCTTCGTTGTTGCTATGCTCCCACGCTTC ATCCTCCTCTGACGTTCCCTTCATCGTCGCGCACAAGAAGGCCTCCCTCAACCGGCTCAAGTCTGGCGCTGAAAGGGTCT CCGTCTCCATCGATATCTACAACCAAGGATCTTCGACTGCATATGACATAAGTCTAGCAGATGATACTTGGCCAAGTGAT CTTTTCAGTATAATCAGTGGCAGCACATCGAAATCATGGGAAAGGCTTGATGCGGGTGGCATCCTCTCCCACACATTTGA GCTGGAGGCAAAAACAAAGGGAGTATTCTCTGGTCAACCAGCTGTCATCAAGTTCCGCATCCCCACTAAGTCTGCTTTAC AGGAGGCATTCTCAACTCCCATATTGCCTTTAGATGTTCTTGCTGACAGACCTCCTGAGAAGAAGTTTGAATGGGCTAAG AGATTGCTGGCTAAGTATGGATCTCTATTCTCAGTGATCTCCATCATGGTTCTGTTTGTGTACCTGGTCGCAACACCATC GAAATCGGGTGCCAAAGGAAGCAAGAAGAAGCGTTAA
Protein sequence (LotjaGi1g1v0630900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPMADPISKALILLSIVASLLLCSHASSSSDVPFIVAHKKASLNRLKSGAERVSVSIDIYNQGSSTAYDISLADDTWPSD LFSIISGSTSKSWERLDAGGILSHTFELEAKTKGVFSGQPAVIKFRIPTKSALQEAFSTPILPLDVLADRPPEKKFEWAK RLLAKYGSLFSVISIMVLFVYLVATPSKSGAKGSKKKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| PIRSF | 9 | 198 | 190 | 3.8E-58 | ||
| PANTHER | 9 | 198 | 190 | 4.4E-68 | – | |
| PANTHER | 9 | 198 | 190 | 4.4E-68 | – | |
| Phobius | 10 | 21 | 12 | - | – | |
| Pfam | 20 | 195 | 176 | 3.5E-56 | – | |
| Phobius | 22 | 29 | 8 | - | – | |
| Phobius | 30 | 162 | 133 | - | – | |
| TMHMM | 162 | 184 | 23 | - | – | |
| Phobius | 163 | 184 | 22 | - | – | |
| Phobius | 185 | 198 | 14 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Endoplasmic reticulum | The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached). | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0630900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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