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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0633400 |
| Transcript ID | LotjaGi1g1v0633400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ethylene-responsive transcription factor; TAIR: AT5G13330.1 related to AP2 6l; Swiss-Prot: sp|Q9LYU3|EF113_ARATH Ethylene-responsive transcription factor ERF113; TrEMBL-Plants: tr|K7MXN6|K7MXN6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0633400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:118747202..118750041) extracted from Lotus japonicus Gifu genome v1.2.
ATTCTTTCTTTTCTCTTTTCTTATTTATTTATTTATTTATTTATATTACACCATATAACCTACCTAATCTAGCTAGTCAT TTTTCTCATCTATCTATTCCTTTTCTTTCTTCTCTCTTTCTTTCTTAAATCAAACAAATTAAAGCATAACTTCTTAATTT CTTGAAACCACATCCCTCTCATTTGACTTAAAAAAATTCCTGGTGAGGTCTTTTGATTTTTCATTTCTATTTCCACCGCA CAAATTAAACCCTTCTTTAACAAGCAAGCTGGTTATCTTTATCTTTTCCTTCGTTTAGCTAGTAGAAATGCTTTCATTTT ATGTATTTATTTCAGACTTATCTCTTATTTAAAAGATTTTTTTTGACAAGCAGTGTATCCCTTCTTTTCATCTTTGGTAT ATATAGTTCAACTTCACTCTCACTCTTCTCCTTGAAGATATTTTAGATCTGGTCTTATGAAAGTGTAGCTGCAAGGCCAC CAGCTACAAGCTTATCATACAAAAATACATATACAAGAAAAATCTTAGCTTTCATTAATTAAGCAAGGTGGATCGAAGAC ATGGGAAGAGGCCTCTCCCTCCTGATCAAGCATCGGGGGATAAAAGGGAAGATTTATACTTTCCTGTTCAACCATCGCCA TCCAAAAGCCAAGGAGAAGAAGCTTCACTATGGCCCTTTATGAATCAAATCAATAGTAGTAATAGTCATGGGGGATTAAG CACTTCTAGCTTGATTGAGATGCAAGACGACCCATCCCAGAAGCCCTTACAAAAAGGTACATTAGTTTCTCAGATTCATG CACCTACTTTTCTCAACAAAAAAAATGGTTACATAAGAATACTTGCTTTTGTCATGAGTTTATTAACAATAATTTTTTTC CTTCATTTTTTTTTAATTTTTTTAATATAGTCCGCTAGGTTCTCTATAAAGATCTTATTTTTTTAACTTCTAAAATTAAT GAAATAAATTGTTATTTTTATTTTCACTACTAAAAGCCTGAGTGCAATAAGTTGATCTCTTATTAAAATAAAAGAAAATT CTAAATCATATTTTCTTCATGTATATGCCAAACCAAGTTGAAAGAAGAAAAAAAATGCTTTAACTTGATATCTATAAGAT GCTAAACCAAGTTGAAATGACACTCCCTTTATTTATCTACCTTTCAGCATTTGTGGTCTTATTTAATTTGTTCCATCTAT ATCTCAGGCTTGGTTGTGTGTAAATGTGTATATTTTATGATGTTGATATGTTGATTTAGTTTGTTGAGAGACAAGTGGCC GGTTTGGTATTTTTGAGCGTGGTTTCTTAGCCTAGTTGATGTCTTTTGATAAATGACAACACTAGCTGCTTGGACAAACT AATTAAAAGCATCAATATTCTCTTTATTGCAATGTTTGTTTGATTTCAAGGTAACACTAATGAGAGAAAAAGACACTATA GAGGCGTTAGACAGAGACCATGGGGCAAATGGGCAGCCGAAATCCGTGACCCTAAAAAAGCAGCTAGAGTGTGGCTTGGC ACGTTTGACACGGCAGAGGCTGCAGCTGCAGCGTACGATGCTGCTGCCTTGAAATTCAAAGGGACCAAAGCCAAACTCAA CTTTCCAGAACGCGTTAATAATAATAACAACAACCACCACCATGTTGCTTCTTCAGCTTCTACACCACCACTACCACTAG TTTATCAACATACACCTCCATTGTTACCACCATCAGAAGGAGAAGAAGGTGGAGAAGGATTCCCGAATCTAATGCAATAC GCTCAGCTTCTATGGAGTAGGGGTGATGATGATGTACAACATGCTGCTTCATCGTTGTTCTCAACATCATCGGCAATGCC AACTCCTACAAATCATGATCAGCAACAGCATGTTGGAGATAGAAATCTTAACCCGGGTGCTCATCAACAGGGAGATTATG ATCATTGTGGTTCTAGTGGTAATTCTTCATTTTTCAAAGGGTTTCCATCATGAGATGATTTTTCCATCTTATAGTTAACA GTGCATGTGCAGTCTGGGCCTGGCTGCTGGGTTAGAGGGTAAGCATATATGCATGCCGTGTGCTGTTAATAAAGACTAGT TTTGCAGTCTTTCATTATTATGATTCAAATAATGCTTCTTGGTTATTGCTTGCACAACTGGTAAGGTAAACACACATTTC TTCACGTGTCAGAGGTGGCAGTGTCGGAATGCAGTTAGTGATCATCTTTTTTGACAGCAATGTTAATTAGATATATAAGG ATGGGGGTGATTCATTCATAGTCTATTTCTTTTTAATTTAGCTCAAATGTTCTACTATTTTTTCCTTCTATTATTTTTCT TTTCTTATTACATCATCTATCACATTTCTCATTTTTCTTTCATCTATCTTAATTTATCTTCTCATAAAATGTAGATGTGA TAGTTTTTTTTTTTTAAATGGTAGATGGTTGTAACTCGATTATAATTCACATCTATTACACTGTGACAAATTAAATTATA TAAAAACACTAACTAATGACCAAAAGAGATCACAATTATGTTCCGAGGGATTAAAAACCAACCTTTGACATATTTCCAGG AAAGAAAAAAACATATTTAAGCCTTTGTTTAAAAAGTTTAGTTGTCCCGTATGAGAAAATAACAATAAAATTTCGAAGGA AAATGGTGGAAATTCCAAAAATTATAATATGTAACCTTAATTAGTGGCGTATCCAAGAGGGGCTAGCAGAGGTCATCGCC CCCTAAGAATTTTGAAATTTTCACCAATTATAGGTATTTTTCCGAGTTAAAATAAAAGAATTTACTGTTCCAAGTGCGAC AATATCCTTCAGATATTTCCCGAGATCTTAATTTAGGCAA
CDS sequence (LotjaGi1g1v0633400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCAAATCAATAGTAGTAATAGTCATGGGGGATTAAGCACTTCTAGCTTGATTGAGATGCAAGACGACCCATCCCA GAAGCCCTTACAAAAAGGTAACACTAATGAGAGAAAAAGACACTATAGAGGCGTTAGACAGAGACCATGGGGCAAATGGG CAGCCGAAATCCGTGACCCTAAAAAAGCAGCTAGAGTGTGGCTTGGCACGTTTGACACGGCAGAGGCTGCAGCTGCAGCG TACGATGCTGCTGCCTTGAAATTCAAAGGGACCAAAGCCAAACTCAACTTTCCAGAACGCGTTAATAATAATAACAACAA CCACCACCATGTTGCTTCTTCAGCTTCTACACCACCACTACCACTAGTTTATCAACATACACCTCCATTGTTACCACCAT CAGAAGGAGAAGAAGGTGGAGAAGGATTCCCGAATCTAATGCAATACGCTCAGCTTCTATGGAGTAGGGGTGATGATGAT GTACAACATGCTGCTTCATCGTTGTTCTCAACATCATCGGCAATGCCAACTCCTACAAATCATGATCAGCAACAGCATGT TGGAGATAGAAATCTTAACCCGGGTGCTCATCAACAGGGAGATTATGATCATTGTGGTTCTAGTGGTAATTCTTCATTTT TCAAAGGGTTTCCATCATGA
Protein sequence (LotjaGi1g1v0633400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNQINSSNSHGGLSTSSLIEMQDDPSQKPLQKGNTNERKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAAA YDAAALKFKGTKAKLNFPERVNNNNNNHHHVASSASTPPLPLVYQHTPPLLPPSEGEEGGEGFPNLMQYAQLLWSRGDDD VQHAASSLFSTSSAMPTPTNHDQQQHVGDRNLNPGAHQQGDYDHCGSSGNSSFFKGFPS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 32 | 32 | - | – | |
| MobiDBLite | 1 | 46 | 46 | - | – | |
| PANTHER | 17 | 172 | 156 | 9.8E-60 | – | |
| PANTHER | 17 | 172 | 156 | 9.8E-60 | – | |
| Gene3D | 40 | 101 | 62 | 1.2E-31 | ||
| SMART | 41 | 104 | 64 | 5.8E-39 | ||
| SUPERFAMILY | 41 | 99 | 59 | 1.44E-22 | ||
| CDD | 41 | 99 | 59 | 1.69261E-23 | ||
| Pfam | 41 | 90 | 50 | 2.1E-13 | ||
| ProSiteProfiles | 41 | 98 | 58 | 25.264 | ||
| PRINTS | 42 | 53 | 12 | 1.1E-11 | ||
| PRINTS | 64 | 80 | 17 | 1.1E-11 | ||
| MobiDBLite | 170 | 219 | 50 | - | – | |
| MobiDBLite | 170 | 192 | 23 | - | – | |
| MobiDBLite | 203 | 219 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0633400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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