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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0634500 |
| Transcript ID | LotjaGi1g1v0634500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | UPF0496 protein family; TAIR: AT3G19330.1 transmembrane protein, putative (DUF677); Swiss-Prot: sp|Q9LT84|U496M_ARATH UPF0496 protein At3g19330; TrEMBL-Plants: tr|G7KXB2|G7KXB2_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi1g1v0634500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:118897045..118900699) extracted from Lotus japonicus Gifu genome v1.2.
CTTAGCAAATTTTGACTATTTGAGATGTCCACTCACACCCATTAGTCCATTAAGACATTGATCCATTAAAACCCCACTTT CTCTCTCCTTTCATAATAACAACCTTACATAACTTCATAATATCTCTGACACAATCCTTAGAGGGAAGTCAAAATTGATC TTTGCAAAAATTCATAGAATGCTGGAATGCATCTCCTTCAACTCACTCACTCCTTCACCATCCAACCTCCCTCCACCACC ACCACCTCCTCCACATTCCCAAGGTAAGAAAAACCCAAAACCTTTCACTCTCACAACCACCACCTGTTTGTTCAAATGCC TCACTGAATAATCTGGTTTTGATTTTCCAGGAAACTCAACTGAAGAAGAAGAAGACACACCCATCACGAGTCCCAATGTC TCACACGAGTACGACCTCGCCGTGCAGACCCACTCCTACAACGAGATCCGCTCCATGGTCCTCGCCCCTCCACAACCAGA CCTCATCGTCCAAGAAAACGAAACCGACCAAGACTCCCACCACCGCCACGTCCTCACCCAAGTCCTTCAACCCGACCCGG ATAGCGTCCGTGAAGCCCTAGCCACCGCTAAACCCACCAGCGCCACCGTCACCCGCCTCGTCTCCTCTTACTTCGACCAC AGCCAAAACGCTTCCCACCTCTGCCTCCTCCTCTGCGGCAGCATCCACCGTGCTCGTCAAATCTACGCCCCTCTCTCCGA CCTAATCGGCATCCTCGACCCTTCCTCATCCCTCTCTCAGCCTCAATGCGACCGCGCTTACGACCTCTTCCTCCAATTCG ACCGCCACGAGAACCCTTTTCTGTTCCCCCACTTTCAGGACCTCCGCCGCAGCTTCTCCAACCTCCGTAGCCACATCCAG CTCGATCGCCGCAAATGCCGCTCCAGAATCCGCCTCCTCCGCCGCGCCACCGCCGGCTGCGCTGTCTGCCTCGTCGCCAC CACCGCCGCCGCGGTGGTATCTGCCGCGCTCTTCGCCGTGCACGCTGCGGTTGGGTTTGCCGCGGTTGCATTGACCCCCT TTTGTGTTCCTAAGAGTGAGAGGAAGGTGCGTGAGAGGTTGAAGCAGCTTGATGCTGCTGAGAATGGTACTCTTGTGGCC AAAGACATTGACACCATTGATAGCCTCGTGGACCGGCTTCAGACTGCGGTGGAAGGCGATAAGGCTCACGTGAGGTTCGC GTTGGAGAGGGGGAAGGACCGGCACGCGACGCAGGAGGTGGTGAAGCAGCTTCGGAAGACGCAGCTGGTGCTTGAACAGC TGCTTAATGATCTTGAGCAACATATCTACCTCTGCTTTTCCACTGTTAACAAAGCCAGACGTTGCCTGCTCAGAGAGATA AGCCTTCATCAAACTTTGTAGTTAGATTTTTGTGTTTATTATGAGATAATCACTTCTGATTCATGATGCTTGCAAACTGT TTAGGCATGCACAGAAACTGATCAACGATTGAGGTAGTGTTTGCTAGATAAGTTAGAATAGGGCATAACATGTGAATCAT TTTCTACATTTGATGCTTATTTGTAAAGAATAGAGAATAAAAACACATAAGGTAAAAAATGGTATATCTTGGTTCCATTA AAAAGGTAGAACCAACAGAATAAAATTTATTGTTCCATTCTGTTCCATGTGTGTGCTAAACACTACCTGGATGTGTAGGC TCTCTGTTTATAATTTGTGGTATTGTGTCATAGATCTCAAGTTAACATGCTTTGTTTTGAAGAACCCCTTAATAATGTAT TCATCATTCCATTCATTCATGTATGAGGTAGCATTATCTACTAGGGCTGTTGGGACAATTTTAATGAATCGAACCACACC TTGAACTTGAACCTAAATAAACCTAGTTTGAAAATAACCGGATCATTTCCCGGTTCAATTACTTAAATCGCTTTCTGTAA AACATATTTCACGAACTGGATTGATTATTATTATTTATTTACGGTGAACATATAACCCACCATTTCTGCTGAGTTGTTTT CCAAACCCAAAACCATCGTTTTGATACTCTGCCTTGTGCCTTAATCACAAATCAGTGGGCTTTTTCTTACAAAACCCCAA ATCACTGAATGAATATCTCCTTTCCTTACATAGTGCAAATGCTAATTCAAATCTGAAATCCCAAATTCAATACGTACCCT AACACTTCATTTTGTTATGCAATTCCTTTGTTTGCACCAAATATTCTGCCTGTTCGTTTGCGATTTGCCCCATCTCTCCA CTAAACTAGTTATGCTAAATTGCTAATTGAATTAACTTTTTAGTACTGTTATATTGGTTTTAGATCTCTAAGATTGTTTT TGTCTCTCTGGTTGTATTCTGTTTTCAGATGAATTCTTCGTTATTTTCATTTTTGCTTCTGGATTCTTTGTAACTAAGAA GGTTTACTTTTCATCTGTGCTTCAAGAATGTAAGGTTTTCTTTATTACTTCGGATTTTCAGTTTTAGTTTTTGTTATTTT TAACTCTTGTATGTTGTTGTTGTGTATTAAATGAGTATCCCAAGTTTGTTTGATAATCTATACAAGACCACTAGTTGCTA TTAGTTTTTCAATCTTTGTTTGTGATTGGGTTCTTTTTGTATCAGTTTTTAAGGCCTTTGTTTCTAGATTACTAGTAAAC TAACTACCCTCTTCAGGCTTTCTCACTTAAAAGCCTTGAGTTTGAGCAACTGTTGTCCTTTTCAAATAATTAAAGAACCT CATAAACACACGTAGGTAAAATGTTATAAGCTTCTAATGTAGATTAGACTATTAGAGCAATTTGATGGCGTAGCTTGCAA ACAAGCTGCATCCTTTGAAATCTAGCTGTAGTGCAAAGGTCTCATAACATCTACACGCTTAGGGTACACTTGAGCATATT CAAAATTATAAAATACAAAATTTTAATATGAAAACAACTTTTAATTCAATTGCAATCTGAATACCTTGACAATGAGACAA AGCCTAACAAGTAACAACACTTAAACAACCTGTAGATACAAATTATTTAATTAAAATATCAAAGCTCATGTATTACTTTG GAGAAATTCAATATGAAAGTAAGTTGAATTGGGATATTCTATCGTGTCTGCTTGCTCTTAGTTCATTGAAAATATAACTA CGAGCATGAGGAGCTGCTTAAAAGTCCAACTTTTAATCTTTACTTTTATCATTGATTGAGGAGCTATCTACTCCATCTGA GACTAGTTGATGTACCATTTCAGAGGTTATGGCTTAAAAAGTGTAACTGTTGAGACGATCCTAAATGAGTTTGAGTTGAA TCGAGCCTTCGGTTACTGATCCCAGAATTCAATATATAAAAAGAGAGGTTGATGTCTTGGAATATTGTAATTTTGAAGTG GCGATGGTGTATTAATATGTGTTGTGTGCATATTTCGAGCTTAATTGTAAAGAAAGACTTGAAAGAGATGAATGATTTCA TACATGAAAGAGATGAATGATTTCATTTTAAGAATTAGCAATGCTGTCAAGTACATTAAGTCCTATCATTCTACACGTGG TAGATTCAACTCAAGTGCTGAACCAGAGATTAAATGTTTGGTTTGACTGGATGATATCCAACACAAGATGTTAGAAATAT AAAAAAAAACCCTTGACTTGCTTAAAGTACATGAGAATACTTATGTTGATTGAGA
CDS sequence (LotjaGi1g1v0634500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGGAATGCATCTCCTTCAACTCACTCACTCCTTCACCATCCAACCTCCCTCCACCACCACCACCTCCTCCACATTC CCAAGGAAACTCAACTGAAGAAGAAGAAGACACACCCATCACGAGTCCCAATGTCTCACACGAGTACGACCTCGCCGTGC AGACCCACTCCTACAACGAGATCCGCTCCATGGTCCTCGCCCCTCCACAACCAGACCTCATCGTCCAAGAAAACGAAACC GACCAAGACTCCCACCACCGCCACGTCCTCACCCAAGTCCTTCAACCCGACCCGGATAGCGTCCGTGAAGCCCTAGCCAC CGCTAAACCCACCAGCGCCACCGTCACCCGCCTCGTCTCCTCTTACTTCGACCACAGCCAAAACGCTTCCCACCTCTGCC TCCTCCTCTGCGGCAGCATCCACCGTGCTCGTCAAATCTACGCCCCTCTCTCCGACCTAATCGGCATCCTCGACCCTTCC TCATCCCTCTCTCAGCCTCAATGCGACCGCGCTTACGACCTCTTCCTCCAATTCGACCGCCACGAGAACCCTTTTCTGTT CCCCCACTTTCAGGACCTCCGCCGCAGCTTCTCCAACCTCCGTAGCCACATCCAGCTCGATCGCCGCAAATGCCGCTCCA GAATCCGCCTCCTCCGCCGCGCCACCGCCGGCTGCGCTGTCTGCCTCGTCGCCACCACCGCCGCCGCGGTGGTATCTGCC GCGCTCTTCGCCGTGCACGCTGCGGTTGGGTTTGCCGCGGTTGCATTGACCCCCTTTTGTGTTCCTAAGAGTGAGAGGAA GGTGCGTGAGAGGTTGAAGCAGCTTGATGCTGCTGAGAATGGTACTCTTGTGGCCAAAGACATTGACACCATTGATAGCC TCGTGGACCGGCTTCAGACTGCGGTGGAAGGCGATAAGGCTCACGTGAGGTTCGCGTTGGAGAGGGGGAAGGACCGGCAC GCGACGCAGGAGGTGGTGAAGCAGCTTCGGAAGACGCAGCTGGTGCTTGAACAGCTGCTTAATGATCTTGAGCAACATAT CTACCTCTGCTTTTCCACTGTTAACAAAGCCAGACGTTGCCTGCTCAGAGAGATAAGCCTTCATCAAACTTTGTAG
Protein sequence (LotjaGi1g1v0634500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLECISFNSLTPSPSNLPPPPPPPPHSQGNSTEEEEDTPITSPNVSHEYDLAVQTHSYNEIRSMVLAPPQPDLIVQENET DQDSHHRHVLTQVLQPDPDSVREALATAKPTSATVTRLVSSYFDHSQNASHLCLLLCGSIHRARQIYAPLSDLIGILDPS SSLSQPQCDRAYDLFLQFDRHENPFLFPHFQDLRRSFSNLRSHIQLDRRKCRSRIRLLRRATAGCAVCLVATTAAAVVSA ALFAVHAAVGFAAVALTPFCVPKSERKVRERLKQLDAAENGTLVAKDIDTIDSLVDRLQTAVEGDKAHVRFALERGKDRH ATQEVVKQLRKTQLVLEQLLNDLEQHIYLCFSTVNKARRCLLREISLHQTL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 216 | 216 | - | – | |
| MobiDBLite | 1 | 46 | 46 | - | – | |
| MobiDBLite | 13 | 28 | 16 | - | – | |
| PANTHER | 29 | 367 | 339 | 3.4E-120 | ||
| PANTHER | 29 | 367 | 339 | 3.4E-120 | – | |
| Pfam | 115 | 365 | 251 | 3.9E-13 | ||
| TMHMM | 217 | 239 | 23 | - | – | |
| Phobius | 217 | 237 | 21 | - | – | |
| Phobius | 238 | 242 | 5 | - | – | |
| Phobius | 243 | 261 | 19 | - | – | |
| TMHMM | 243 | 262 | 20 | - | – | |
| Phobius | 262 | 371 | 110 | - | – | |
| Coils | 326 | 346 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0634500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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