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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0635000 |
| Transcript ID | LotjaGi1g1v0635000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chalcone synthase; TAIR: AT5G13930.1 Chalcone and stilbene synthase family protein; Swiss-Prot: sp|Q9XJ57|CHS2_CITSI Chalcone synthase 2; TrEMBL-Plants: tr|G7KXB8|G7KXB8_MEDTR Chalcone and stilbene synthase family protein; Found in the gene: LotjaGi1g1v0635000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:118984809..118986943) extracted from Lotus japonicus Gifu genome v1.2.
CCACGTGTCTGCTCATCTATCCGTCCCTCATACCTACTCGCTTGCCTAACGGTTCATCTCCGTGCACACAACCAAACAAT ATATATTCCTGTTCCCCTATTCCGGCAACTCATAAAACACTCTTTCCACTTACCAAATCTTCCTCCTCCTCCTCCTCACT TATCAAGTAAACCACCACCACCACCACTCACCACCCTCCTCATAAAATGGTCACCGTCGAGGAGATCCGCAACGCTCAGC GTTCCAGTGGACCTGCCACCATCCTCGCCTTCGGCACCGCCACCCCTTCCCACTGCGTCATGCAAGCTGATTACCCTGAC TACTACTTCCGCATCACCAACAGTGAACACATGACTGACCTCAAAGAAAAATTCAAGCGCATGTGTATGTCATAATAATA ATTCCAGTATTTTAAAATTTTGCCTCAGATTCTAAAGTTTGTTGCATGACAATTCATGGTATCGGATGAGTTCAACTTTG ATCACCACATTCTCACCTTCTAAAGTTTGTTGCATTACAATTCATGGTAATAGACGAGTCTTTTTAGAAATAAAAAATAT AAAGTTTGGGTTTGGCTATCATCACATCTTCAGATTATAAAATTTGTTGCATTATAATTCATACTTTTTTAAAAGTTTGG GTAAATTCGACTTTTGTCCTCACCCACGAAGATCTAAAGTTTATTGCATTACAATTCATAGTTTTTTTTTAATTTGGGTG AATTCGACTTTAATAGAGTCAGTGAGTTCGGCTTTCATCGCCACACATATTTTGGGTAAATGACTAACTAACATACCTCG CAGGTGAAAAGTCCATGATCAGGAAGCGGTACATGCACCTGACGGAGGAGATTCTGAAGGAGAATCCGGCCATGTGCGCG TACATGGCGCCGTCGCTGGATGCTCGTCAGGACCTGGTGGTGGTGGAGGTGCCGAAGCTAGGAAAAGAGGCGGCGGCGAA GGCGATCAAGGAGTGGGGTCAACCAAAGTCAAAGATCACTCACCTCGTTTTCTGCACCACCTCCGGCGTCGACATGCCCG GCGCAGACTACCAGCTCACCAAGCTTCTCGGCCTGAAACCCTCCGTGAAACGCCTCATGATGTACCAGCAAGGCTGCTTC GCCGGCGGCACGGTGCTTCGCCTGGCCAAGGATCTCGCCGAGAACAACAAAGGCGCAAGAGTCCTCGTCGTGTGTTCCGA AATCACCGCCGTCACCTTCCGCGGCCCATCTGACACCCACCTCGACTCCCTCGTCGGGCAGGCACTCTTCGGCGACGGCG CCGCCGCGATTATTGTCGGTGCAGATCCTGACCTCGCCGTGGAGCGTCCGATTTTCCAGCTGGTCTCCGCCGGGCAAACG ATTCTCCCTGACTCCGACGGCGCGATCGACGGCCACCTCCGTGAGGTGGGGCTGACGTTCCACCTTCTCAAGGACGTTCC CGGGATCATCTCGAAGCACATTGAGAAGAGCTTATCGGAGGCGTTTGCGCCGATTGGGATTTCTGACTGGAACTCGCTGT TCTGGATCGCGCATCCGGGTGGACCGGCGATTTTGGACCAGGTTGAGGCGAAACTCCGGCTCAAAGAGGAGAAACTCCGG TCGACCCGGCACGTGCTGGGTGAGTATGGGAACATGTCAAGCGCGTGCGTGCTGTTTATTTTGGATGAGGTGCGGCGGAG GTCGAAGGAGGAAGGGAAGGAAACCACCGGAGATGGGTTGGAGTGGGGTGTTCTTTTCGGGTTCGGGCCGGGTCTCACCG TCGAGACCGTCGTGTTGCACAGTGTTCCCTTGGAGGCTTGAACCGAGTGAAAAAAAAAATGCTTTTGTATGTTGCACGTG GGAAGTAACGGTGGTGGGCACACGCACACTCAAATAAAAGTTGTGTTCTTGTGATATTAATTATTATAATTTTTAATTTA ATGATATATTATGATGATGTGGTGTTTGTGAAGGAATATTTGCCAATAAATGTAGAATAGTGATATATCATATTTTCATT GCTTAAGGAAACCTCGAAAAATAGGAGGAGGAAACAATTTTATGATGTAGATTGTTGGAAATGCTTCTTGCGTTGCGATT ATGTTGGATAACTCTTTTTTTTTTTGGAATGGAGTGGGTGCTTCTTGAGTTTATG
CDS sequence (LotjaGi1g1v0635000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTCACCGTCGAGGAGATCCGCAACGCTCAGCGTTCCAGTGGACCTGCCACCATCCTCGCCTTCGGCACCGCCACCCC TTCCCACTGCGTCATGCAAGCTGATTACCCTGACTACTACTTCCGCATCACCAACAGTGAACACATGACTGACCTCAAAG AAAAATTCAAGCGCATGTGTGAAAAGTCCATGATCAGGAAGCGGTACATGCACCTGACGGAGGAGATTCTGAAGGAGAAT CCGGCCATGTGCGCGTACATGGCGCCGTCGCTGGATGCTCGTCAGGACCTGGTGGTGGTGGAGGTGCCGAAGCTAGGAAA AGAGGCGGCGGCGAAGGCGATCAAGGAGTGGGGTCAACCAAAGTCAAAGATCACTCACCTCGTTTTCTGCACCACCTCCG GCGTCGACATGCCCGGCGCAGACTACCAGCTCACCAAGCTTCTCGGCCTGAAACCCTCCGTGAAACGCCTCATGATGTAC CAGCAAGGCTGCTTCGCCGGCGGCACGGTGCTTCGCCTGGCCAAGGATCTCGCCGAGAACAACAAAGGCGCAAGAGTCCT CGTCGTGTGTTCCGAAATCACCGCCGTCACCTTCCGCGGCCCATCTGACACCCACCTCGACTCCCTCGTCGGGCAGGCAC TCTTCGGCGACGGCGCCGCCGCGATTATTGTCGGTGCAGATCCTGACCTCGCCGTGGAGCGTCCGATTTTCCAGCTGGTC TCCGCCGGGCAAACGATTCTCCCTGACTCCGACGGCGCGATCGACGGCCACCTCCGTGAGGTGGGGCTGACGTTCCACCT TCTCAAGGACGTTCCCGGGATCATCTCGAAGCACATTGAGAAGAGCTTATCGGAGGCGTTTGCGCCGATTGGGATTTCTG ACTGGAACTCGCTGTTCTGGATCGCGCATCCGGGTGGACCGGCGATTTTGGACCAGGTTGAGGCGAAACTCCGGCTCAAA GAGGAGAAACTCCGGTCGACCCGGCACGTGCTGGGTGAGTATGGGAACATGTCAAGCGCGTGCGTGCTGTTTATTTTGGA TGAGGTGCGGCGGAGGTCGAAGGAGGAAGGGAAGGAAACCACCGGAGATGGGTTGGAGTGGGGTGTTCTTTTCGGGTTCG GGCCGGGTCTCACCGTCGAGACCGTCGTGTTGCACAGTGTTCCCTTGGAGGCTTGA
Protein sequence (LotjaGi1g1v0635000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVTVEEIRNAQRSSGPATILAFGTATPSHCVMQADYPDYYFRITNSEHMTDLKEKFKRMCEKSMIRKRYMHLTEEILKEN PAMCAYMAPSLDARQDLVVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLKPSVKRLMMY QQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAIIVGADPDLAVERPIFQLV SAGQTILPDSDGAIDGHLREVGLTFHLLKDVPGIISKHIEKSLSEAFAPIGISDWNSLFWIAHPGGPAILDQVEAKLRLK EEKLRSTRHVLGEYGNMSSACVLFILDEVRRRSKEEGKETTGDGLEWGVLFGFGPGLTVETVVLHSVPLEA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 235 | 235 | 1.2E-92 | ||
| SUPERFAMILY | 1 | 232 | 232 | 1.18E-80 | ||
| PIRSF | 2 | 389 | 388 | 7.2E-136 | ||
| PANTHER | 2 | 389 | 388 | 4.4E-263 | – | |
| PANTHER | 2 | 389 | 388 | 4.4E-263 | ||
| Pfam | 5 | 228 | 224 | 3.6E-124 | ||
| CDD | 16 | 384 | 369 | 1.86166E-171 | – | |
| ProSitePatterns | 156 | 172 | 17 | - | ||
| SUPERFAMILY | 235 | 387 | 153 | 9.21E-50 | ||
| Gene3D | 236 | 390 | 155 | 1.5E-56 | ||
| Pfam | 238 | 388 | 151 | 1.5E-69 | ||
| Coils | 310 | 330 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Biosynthetic process | The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. | ||
| Molecular function | Transferase activity, transferring acyl groups | Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). | ||
| Molecular function | Transferase activity, transferring acyl groups other than amino-acyl groups | Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). |
Expression pattern of LotjaGi1g1v0635000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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