Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0635100.2

Overview

Field Value
Gene ID LotjaGi1g1v0635100
Transcript ID LotjaGi1g1v0635100.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Phosphoribosyl-AMP cyclohydrolase; TAIR: AT1G31860.1 histidine biosynthesis bifunctional protein (HISIE); Swiss-Prot: sp|O82768|HIS2_ARATH Histidine biosynthesis bifunctional protein hisIE, chloroplastic; TrEMBL-Plants: tr|A0A151T975|A0A151T975_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0635100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:118997176..118998597) extracted from Lotus japonicus Gifu genome v1.2.

GGGGCACCTCATGTAAGTTTTATTTATATTTCTGGGTTGAAATTACGTAATAATTTAGTTCCATGGGATTAAGTTCGGAA ATTCTTTTGCACTTTTATGGTGATTGTAAATGTGTTGTTGATACTAAAAGGAAAGCTCATCCTTTGTGTTGCTTATGAAA TTTCTTGGCAATTGTTGTTTTCATTTCTTCCTTATTTTAATGTTATTTCTGATTTTTTATTTCACTTTAAAAAGTTCAAA CTTTTGTCAGGTAGACTCATTTCTGGACAGTTTAAAATGGGATGATAAAGGTTTGGCTGTGGCAATAGCTCAGAATGTTG ACACAGGAGCCATCCTAATGCAAGGCTTTGCAAATAGAGAAGCAGTGGTTACAACCATATCTTCTCGCAAGGCCACATTC TATAGCCGGTCACGATCAGCATTGTGGACGAAAGGAGAGACCTCTAATAATTTTATCAATGTTCATGATGTCTTTCTTGA TTGTGATCGCGATTCCGTAAGCTCTTGCCTTCTCTCCCGATGGAATTATAAGTGTTTTCCTTTTCTTCTTTGCATTAGTA TCATATGGAACCTTGATTACTTTTTCCCCCTGGTTTCTCAGATAATATACCTTGGAAAACCTGATGGGCCTACCTGCCAC ACAGGAGCAGAAACATGCTACTATACATCAGTCTTTGACTTGTTAAAAGAACAAGAGGTTAGTTTAAATTGATTCAAACA AGCATGTTATTGGCTTGTTTTGTTTCAAATACAGTCTGCAATATTCAAATTTATTTGGTTTTTTTTCTACAGGCTGATGG AAATAAATTGGCATTAACTTCTTTGTATGACTTAGAGTCTACAATATCCCAGCGCAAAGCAGAGTTAGCAGAAGTAGAAA ATGGAAAGCCTTCTTGGACAAAGCGATTATTGCTTAATGATGAGTTGTTGTGCTCTAAAATCAGGTTGCGTATATATTGG CATGTTCTTCTGTTCAGTTTGAATATAAGTAACAAACCTTTTCCCCCTTTTCTTCCCCCGAAAAATCCATGTTGTCCATG CTTCAGTTATTGCTAAGCCTTTTAGCTGATACAATTGCCTCTGTGCTGAACCTTTTGTTTAAAATACTAATTTTCTTATG ATTCACTTTGCTTGAAGAAAACATTTGGAGTAAAAGCTTGTTATCTCTATGACTTCAGATTGTAACTTTATCTTTCTACT TGCAGAGAAGAGGCAAATGAGTTGTGTCAAACACTAGAGAGTAATGAGGACAAGTCGCGTACTGCTTCAGAGATGGCTGA TGTACTGTACCATGCCATGGTTTTGATGGCACGGAAAGATGTCAAAATGGAAGATGTTTTGCAGGTTCTTCGGCAAAGAT TTTCCCAATCTGGTATTGAGGAAAAGAGAAGTCGTGCGTCCCAGAAATCAGTGGACGGGTGA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0635100.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAAGGCTTTGCAAATAGAGAAGCAGTGGTTACAACCATATCTTCTCGCAAGGCCACATTCTATAGCCGGTCACGATC AGCATTGTGGACGAAAGGAGAGACCTCTAATAATTTTATCAATGTTCATGATGTCTTTCTTGATTGTGATCGCGATTCCA TAATATACCTTGGAAAACCTGATGGGCCTACCTGCCACACAGGAGCAGAAACATGCTACTATACATCAGTCTTTGACTTG TTAAAAGAACAAGAGGCTGATGGAAATAAATTGGCATTAACTTCTTTGTATGACTTAGAGTCTACAATATCCCAGCGCAA AGCAGAGTTAGCAGAAGTAGAAAATGGAAAGCCTTCTTGGACAAAGCGATTATTGCTTAATGATGAGTTGTTGTGCTCTA AAATCAGAGAAGAGGCAAATGAGTTGTGTCAAACACTAGAGAGTAATGAGGACAAGTCGCGTACTGCTTCAGAGATGGCT GATGTACTGTACCATGCCATGGTTTTGATGGCACGGAAAGATGTCAAAATGGAAGATGTTTTGCAGGTTCTTCGGCAAAG ATTTTCCCAATCTGGTATTGAGGAAAAGAGAAGTCGTGCGTCCCAGAAATCAGTGGACGGGTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0635100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQGFANREAVVTTISSRKATFYSRSRSALWTKGETSNNFINVHDVFLDCDRDSIIYLGKPDGPTCHTGAETCYYTSVFDL LKEQEADGNKLALTSLYDLESTISQRKAELAEVENGKPSWTKRLLLNDELLCSKIREEANELCQTLESNEDKSRTASEMA DVLYHAMVLMARKDVKMEDVLQVLRQRFSQSGIEEKRSRASQKSVDG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF141734
1 78 78 1.83E-29
IPR038019
Gene3D
G3DSA:3.10.20.400
1 65 65 7.3E-23
IPR038019
Pfam
PF01502
1 74 74 1.9E-27
IPR002496
PANTHER
PTHR42945
1 201 201 7.4E-90 –
PANTHER
PTHR42945:SF1
1 201 201 7.4E-90 –
Gene3D
G3DSA:1.10.287.1080
88 184 97 2.6E-23 –
CDD
cd11534
96 184 89 1.5147E-26
IPR008179
TIGRFAM
TIGR03188
96 184 89 5.6E-21
IPR008179
SUPERFAMILY
SSF101386
96 188 93 2.99E-15 –
Pfam
PF01503
98 187 90 3.7E-11
IPR021130
Coils
Coil
132 152 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000105
Biological process Histidine biosynthetic process The chemical reactions and pathways resulting in the formation of histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid.
Subterm of
GO:0004635
Molecular function Phosphoribosyl-AMP cyclohydrolase activity Catalysis of the reaction: 1-(5-phosphonatoribosyl)-5'-AMP + H(2)O = 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide.
Subterm of
GO:0004636
Molecular function Phosphoribosyl-ATP diphosphatase activity Catalysis of the reaction: 1-(5-phospho-D-ribosyl)-ATP + H(2)O = 1-(5-phosphonatoribosyl)-5'-AMP + diphosphate + H(+).
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0635100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…