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LotjaGi1g1v0635400.1

Overview

Field Value
Gene ID LotjaGi1g1v0635400
Transcript ID LotjaGi1g1v0635400.1
Lotus japonicus genome version Gifu v1.2
Description DNA topoisomerase; TAIR: AT5G13920.1 GRF zinc finger / Zinc knuckle protein; Swiss-Prot: sp|Q9LVP1|TOP3A_ARATH DNA topoisomerase 3-alpha; TrEMBL-Plants: tr|A0A151R6F5|A0A151R6F5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0635400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:119020858..119024286) extracted from Lotus japonicus Gifu genome v1.2.

GAATCAGGGAAGACAGAGGAACACTCTTTGACAGAGGTAACACATCACTTCTTGTCAAAGCCACTTTCACACTCCAACGT CTCAATTCTCTCTCCACCACCACCACCACCACCACCAGTGTCTACCACCACCACCACCGTAGAAGAAAAGCAAAAAAGCA AAATGTGTGATCAGGAAGTGAACCAGCCTCTCTCACCTTCACGATCACCATCAAATCCTCCTCAATTTCAACTTCACCCA AGCACCCCGGAGAAATTTCCCAACCCAAACATTCAGAAACGAATGCAAGGAGACACTTGCTTCAAGTGTCACCAACAAGG TCATTGGAGTTGGTTTTGCCCTTTGAACTCTCCCAACAAGAACCCCCTCTCATCATCATCATCATCACACTCACCCACTC TCCACTCCCCTCAGAACATTCACTGCCGTTGTGGCTACGGTTTGTGCATCATCAAAACCTCCAAGAGCGAGAGAAACCCG GGGAGAAAGTACTATGCCTGCCCCGTCAAAAGGGTATGCCTCTAACACCTTCAAGTTTCAACCCTTTGTGATTCCCAGTT TTTCTTTTTTGATTTTCTTAACTGTTTCTATGTTGGGTGTTTTTTCTTCTTCTTCAGGGGGCACAGTGCAATGGATACGG GTTTATGAAATGGTGTGATGAGCCTGTTGATCAGAGTGATTGGCAGCCTCCGTTGTTCAAGTACCCTGAGTGTGAATGCG GAGCTGGAGTGTGTCGAAGAGTGAAGGGAACACAAGAGAGCACCAGTGTGGTTAAGTACTATTTTGAGTGCCCTGTGAAA AAGGTATGTAACTATGTTTGATGATCATTTTAGTGTTCTAGTTTTCTAATGGTTCTATATCTGCTTCTTGAGTCACTGGT TTTAGTCCCAAATGAGTTATTTACTAATTTTTTGCCTCAACTTCCTGATTTGGTCCTTTGGTTGTGAAACACTTGCAAGT TTTATGTACTGAAGCTTATGTATGCATCATTAATTGCATATGAAACATCCTAAGTGTAGCAATATTTTCAGCTACCTTTC TGTATGCATTCCCTAGAAGATTATTTTTTGGGGTGTACTACTATCTGTTTATTTTTGTTTATCCATAATTAATACTATCA AACAGGATCATGGATCTTGTGGATACCAAGTGTCAGAAGATGAAGTGCTCAACAACACAAGCATTGCTCCTATCCCACAA AGCATGTCTGAAGAGGAAGTGCTCAACAACTCAAGCATTACTCCTACCCGGAAAAGCAGGCAAAGGTGTCTCGATGACTT TTACCAAAATGATAAAAGTCATAAAACTGAGAATGACCTGGGTGATGGCTTGTGTGAGGGAGGTAATTTCCTTGGACAGA CCAAAAGGATGAGAATCATGGACAATTATGAATTTCTCTCATCCTTGGTTATATCTGAAATTCCAGAAGGTGAAGATGCT GGTGCAGTAGCGGAAGTAGACCAATCAAAAGTTGCTGGTTTTCCAGAATTTGAGATTGCTGATGATGATTTAGAATTTGC CGACTTAGCCATTCAGGCAGAAGCTGATCTATTACCTAGTCTGTCAACACCTTCAAGGATCAGTGCTCGACAATATGTTT TTGTTAGGGACATTGTTGATGCATCACTTGGTACTATTTCCTTTTTCTGGTTTTCTAATTTCTATTCATCATTTGAAGCT ATTTTATTTTTCTGGTTTTCCATATTTTTAAAGAAATTGTATTTCCTCCTTCCACATGTACTTTATTTTGCTGCTTCCAC TTCCACAGCCAAGTTTCACCATTTTTTTTCTTTGCAAATTCAATCTCATGACCTTGCAATTGATTTCTTAAAATATTGGA TTTCTTCTTTCTAGCCCTGGACCAAAGTCATAACAGTTAAAGCACACTGCTAAGACAGCTCTTAAGACTTGCTTTGTGTC TTTCTTGTTCATCTGCAACAACTCAACACTGTTTATCTGTTCAATCTACAATCAATTTAATTCGATTTGATGATGTTTGA TTGTGTTTGGTTATATATAATACATTTCCTCTTGATCACAAAAACAAACTTTGAAAGTAGGATAAATTTTTCTCATAATT TTTTTTTATGACAGAGAATGTATGTTTGAAATTCTTTTGATCTGATTGCAGATGGTTTTCTAATGGGTTGGTTAGGCCGC CTTGTCTTTGTCCATCCCACAAAGGGCTTGAAGCTTCCCACACCACAGCCATTTTTCTGCTGTAAGATTTCTTAGTTTCA TGTGTGTGTACTGTGTACTTTCCCTCTATGGCTCTGCATTATTCATGTTGCTTCTGTCCTTCCATCATTACAGGTGTTTT CCCATCTTTTAATCCTATACTTGTTCCTAAACAAGCAAGTATTATTCTTAATGGTCCTAGTGCTCAACATACTCAACTTT CAACTACTAGTCTTACTGAGGTATCCAGAGATGTAGTTAGTCCCAATTCACCACCAGGCAGTGGAAACAAGCCAATTACA ATGTCAAAGAGGCAAAGAGAAGTTGCCTTGTTTATGCAGCAGCAGCTACTGAGTGATCTAGAGAATCTGGATCCTCGCGA GCAGGACTCTATGAGAGAGGCAGCAGAGACCACTTTCACATTGTTAAATCGTTTAGAAGTTGACTGTGAGCAATTTTCTC AGCATGTGTGGGATTTCATCAATCTCACATCATCCATAGTAGAAATGGATAAGTCTATGGAAAATTCACTTACTCTCGAG GAACACCAAAAACTCTTTGAGGAGGAGGAAATTAAATTGGATTGCATCAAGGATGACCTTGCTGAGACTGAGGCTTTGCT TGAAGTATCAAACCGACATAGAAAAACTCTTTGTGAAGAGATCTCTCATCTTGAGGCCATGCTCCTTAAGAAGAAAAACC AATTAGAATCTTGTGAGGTGGAGACATTGCAAATGGAGACTCAGCTTGGTGATTTGAAAAGAAGTATGTTGAAAGCTGAC ATAACTTTGAGGGATAGAGCTGAACAAGTAGAAGTAGCCCGCAAACAAAGTGAAGAAAGAAAAGCAAAGCAGGTTGCAGC TAAGACAGCACTGGAGAATGCAAAACTTGAATTGGAGAATTGATTACTCACTGTATTTGTTAAGGGAATGTTGTGTTGTG AATAGTGTATATATTTAACTTGTTCTCTTCCTCCTCCCCTGTACTATGTAAGATCAATCTCATGTGTATCATCTGTTATC TGTATGTCTTTGTTTCAACATTGGCAGCTTACTGTTCCTAATGGTCCTAGTCAAGTTGTTTTCAAATTCTTAACCACCTT GCTTGGCATTCTATCCTCTGTGTAATGCTAATGCACACTTCTTTTGTTTCTTCTCTTTAATTTCAGTCTCATAAATCTTA CTATCTAAGCTTTCTGTGCTATCCTTTCTACAGAATGGCATTTGGAAAAAAAAATGAGTTCTATACGCA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0635400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTGTGATCAGGAAGTGAACCAGCCTCTCTCACCTTCACGATCACCATCAAATCCTCCTCAATTTCAACTTCACCCAAG CACCCCGGAGAAATTTCCCAACCCAAACATTCAGAAACGAATGCAAGGAGACACTTGCTTCAAGTGTCACCAACAAGGTC ATTGGAGTTGGTTTTGCCCTTTGAACTCTCCCAACAAGAACCCCCTCTCATCATCATCATCATCACACTCACCCACTCTC CACTCCCCTCAGAACATTCACTGCCGTTGTGGCTACGGTTTGTGCATCATCAAAACCTCCAAGAGCGAGAGAAACCCGGG GAGAAAGTACTATGCCTGCCCCGTCAAAAGGGGGGCACAGTGCAATGGATACGGGTTTATGAAATGGTGTGATGAGCCTG TTGATCAGAGTGATTGGCAGCCTCCGTTGTTCAAGTACCCTGAGTGTGAATGCGGAGCTGGAGTGTGTCGAAGAGTGAAG GGAACACAAGAGAGCACCAGTGTGGTTAAGTACTATTTTGAGTGCCCTGTGAAAAAGGATCATGGATCTTGTGGATACCA AGTGTCAGAAGATGAAGTGCTCAACAACACAAGCATTGCTCCTATCCCACAAAGCATGTCTGAAGAGGAAGTGCTCAACA ACTCAAGCATTACTCCTACCCGGAAAAGCAGGCAAAGGTGTCTCGATGACTTTTACCAAAATGATAAAAGTCATAAAACT GAGAATGACCTGGGTGATGGCTTGTGTGAGGGAGGTAATTTCCTTGGACAGACCAAAAGGATGAGAATCATGGACAATTA TGAATTTCTCTCATCCTTGGTTATATCTGAAATTCCAGAAGGTGAAGATGCTGGTGCAGTAGCGGAAGTAGACCAATCAA AAGTTGCTGGTTTTCCAGAATTTGAGATTGCTGATGATGATTTAGAATTTGCCGACTTAGCCATTCAGGCAGAAGCTGAT CTATTACCTAGTCTGTCAACACCTTCAAGGATCAGTGCTCGACAATATGTTTTTGTTAGGGACATTGTTGATGCATCACT TGATGGTTTTCTAATGGGTTGGTTAGGCCGCCTTGTCTTTGTCCATCCCACAAAGGGCTTGAAGCTTCCCACACCACAGC CATTTTTCTGCTGTGTTTTCCCATCTTTTAATCCTATACTTGTTCCTAAACAAGCAAGTATTATTCTTAATGGTCCTAGT GCTCAACATACTCAACTTTCAACTACTAGTCTTACTGAGGTATCCAGAGATGTAGTTAGTCCCAATTCACCACCAGGCAG TGGAAACAAGCCAATTACAATGTCAAAGAGGCAAAGAGAAGTTGCCTTGTTTATGCAGCAGCAGCTACTGAGTGATCTAG AGAATCTGGATCCTCGCGAGCAGGACTCTATGAGAGAGGCAGCAGAGACCACTTTCACATTGTTAAATCGTTTAGAAGTT GACTGTGAGCAATTTTCTCAGCATGTGTGGGATTTCATCAATCTCACATCATCCATAGTAGAAATGGATAAGTCTATGGA AAATTCACTTACTCTCGAGGAACACCAAAAACTCTTTGAGGAGGAGGAAATTAAATTGGATTGCATCAAGGATGACCTTG CTGAGACTGAGGCTTTGCTTGAAGTATCAAACCGACATAGAAAAACTCTTTGTGAAGAGATCTCTCATCTTGAGGCCATG CTCCTTAAGAAGAAAAACCAATTAGAATCTTGTGAGGTGGAGACATTGCAAATGGAGACTCAGCTTGGTGATTTGAAAAG AAGTATGTTGAAAGCTGACATAACTTTGAGGGATAGAGCTGAACAAGTAGAAGTAGCCCGCAAACAAAGTGAAGAAAGAA AAGCAAAGCAGGTTGCAGCTAAGACAGCACTGGAGAATGCAAAACTTGAATTGGAGAATTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0635400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MCDQEVNQPLSPSRSPSNPPQFQLHPSTPEKFPNPNIQKRMQGDTCFKCHQQGHWSWFCPLNSPNKNPLSSSSSSHSPTL HSPQNIHCRCGYGLCIIKTSKSERNPGRKYYACPVKRGAQCNGYGFMKWCDEPVDQSDWQPPLFKYPECECGAGVCRRVK GTQESTSVVKYYFECPVKKDHGSCGYQVSEDEVLNNTSIAPIPQSMSEEEVLNNSSITPTRKSRQRCLDDFYQNDKSHKT ENDLGDGLCEGGNFLGQTKRMRIMDNYEFLSSLVISEIPEGEDAGAVAEVDQSKVAGFPEFEIADDDLEFADLAIQAEAD LLPSLSTPSRISARQYVFVRDIVDASLDGFLMGWLGRLVFVHPTKGLKLPTPQPFFCCVFPSFNPILVPKQASIILNGPS AQHTQLSTTSLTEVSRDVVSPNSPPGSGNKPITMSKRQREVALFMQQQLLSDLENLDPREQDSMREAAETTFTLLNRLEV DCEQFSQHVWDFINLTSSIVEMDKSMENSLTLEEHQKLFEEEEIKLDCIKDDLAETEALLEVSNRHRKTLCEEISHLEAM LLKKKNQLESCEVETLQMETQLGDLKRSMLKADITLRDRAEQVEVARKQSEERKAKQVAAKTALENAKLELEN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 37 37 - –
Gene3D
G3DSA:4.10.60.10
29 74 46 1.5E-6 –
SUPERFAMILY
SSF57756
30 65 36 2.46E-6
IPR036875
PANTHER
PTHR33680:SF3
41 626 586 3.2E-128 –
PANTHER
PTHR33680
41 626 586 3.2E-128 –
Pfam
PF06839
87 132 46 2.5E-11
IPR010666
MobiDBLite
mobidb-lite
411 432 22 - –
Coils
Coil
512 539 28 - –
Coils
Coil
554 574 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0635400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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