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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PF06839
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We have found 45 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.024s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0047989.1
n.a. Zinc finger homeodomain protein [Medicago truncatula] gi|357477555|ref|XP_003609063.1| chr0 16098580 16099187 -
2 domain predictions
1 GO term
Lj0g3v0081109.1
n.a. DNA topoisomerase III alpha [Pseudozyma antarctica T]-34] gi|443894350|dbj|GAC71698.1| chr0 31599371 31600780 -
2 domain predictions
1 GO term
Lj0g3v0118659.1
n.a. DNA topoisomerase 3-beta [Trichosporon asahii var]. asahii CBS 2479] gi|401881458|gb|EJT45758.1| chr0 52455698 52456715 -
2 domain predictions
1 GO term
Lj0g3v0118699.1
n.a. RING finger protein [Medicago truncatula] gi|357507629|ref|XP_003624103.1| chr0 52462461 52463438 +
2 domain predictions
1 GO term
Lj0g3v0199589.1
n.a. GRF zinc finger-containing protein-like protein [Gladiolus grandiflorus] gi|304273293|gb|ADM18310.1| chr0 98006129 98006621 +
2 domain predictions
1 GO term
Lj0g3v0227049.1
n.a. Zinc finger homeodomain protein [Medicago truncatula] gi|357477555|ref|XP_003609063.1| chr0 117337321 117339746 +
2 domain predictions
1 GO term
Lj0g3v0243439.1
n.a. GRF zinc finger containing protein [Medicago truncatula] gi|357513263|ref|XP_003626920.1| chr0 126281832 126282215 +
2 domain predictions
1 GO term
Lj0g3v0255809.1
n.a. GRF zinc finger containing protein [Medicago truncatula] gi|357483579|ref|XP_003612076.1| chr0 132853297 132853840 +
2 domain predictions
1 GO term
Lj0g3v0293639.1
n.a. GRF zinc finger containing protein [Medicago truncatula] gi|357459337|ref|XP_003599949.1| chr0 152488298 152488784 +
2 domain predictions
1 GO term
Lj0g3v0294119.1
n.a. ribonuclease H [Banana streak virus] gi|219816428|gb|ACL37065.1| chr0 152841934 152842588 +
2 domain predictions
1 GO term
Lj0g3v0309849.1
n.a. GRF zinc finger containing protein [Medicago truncatula] gi|357459337|ref|XP_003599949.1| chr0 161747180 161748096 -
2 domain predictions
1 GO term
Lj1g3v0414990.1
n.a. GRF zinc finger containing protein [Medicago truncatula] gi|357513263|ref|XP_003626920.1| chr1 5100480 5100998 -
2 domain predictions
1 GO term
Lj1g3v5060950.1
n.a. GRF zinc finger containing protein [Medicago truncatula] gi|357513263|ref|XP_003626920.1| chr1 61941917 61942435 -
2 domain predictions
1 GO term
Lj2g3v0276610.1
n.a. ZYRO0C13222p [Zygosaccharomyces rouxii] gi|254580459|ref|XP_002496215.1| chr2 4704607 4705752 -
2 domain predictions
1 GO term
Lj4g3v1037650.1
n.a. PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Glycine max] gi|356502118|ref|XP_003519868.1| chr4 14837862 14846302 +
2 domain predictions
1 GO term
Lj4g3v1037650.2
n.a. PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Glycine max] gi|356502118|ref|XP_003519868.1| chr4 14837862 14846302 +
2 domain predictions
1 GO term
Lj5g3v1014670.1
n.a. GRF zinc finger containing protein [Brassica oleracea] gi|89257458|gb|ABD64950.1| chr5 16280603 16281118 -
2 domain predictions
1 GO term
LotjaGi1g1v0093100_LC.1
n.a. DNA topoisomerase; TAIR: AT1G52603.1 GRF zinc finger protein; Swiss-Prot: sp|Q9LVP1|TOP3A_ARATH DNA topoisomerase 3-alpha; TrEMBL-Plants: tr|A0A1J6JGG4|A0A1J6JGG4_NICAT Uncharacterized protein; Found in the gene: LotjaGi1g1v0093100_LC LjG1.1_chr1 13652103 13657644 +
2 domain predictions
1 GO term
LotjaGi1g1v0104500_LC.1
n.a. GRF zinc finger protein; TAIR: AT5G15690.1 zinc ion binding protein; Swiss-Prot: sp|Q9ZS96|Y4478_ARATH Uncharacterized protein At4g04775; TrEMBL-Plants: tr|A0A0L9VN44|A0A0L9VN44_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0104500_LC LjG1.1_chr1 16117534 16118283 +
2 domain predictions
1 GO term
LotjaGi1g1v0221400_LC.1
n.a. DNA topoisomerase; TAIR: AT5G13920.1 GRF zinc finger / Zinc knuckle protein; Swiss-Prot: sp|C7J0A2|TOP3A_ORYSJ DNA topoisomerase 3-alpha; TrEMBL-Plants: tr|A0A067F933|A0A067F933_CITSI Uncharacterized protein; Found in the gene: LotjaGi1g1v0221400_LC LjG1.1_chr1 49220204 49220933 +
2 domain predictions
1 GO term
LotjaGi1g1v0321800.1
n.a. DNA topoisomerase; TAIR: AT5G63920.1 topoisomerase 3alpha; Swiss-Prot: sp|Q9LVP1|TOP3A_ARATH DNA topoisomerase 3-alpha; TrEMBL-Plants: tr|A0A0S3RFA9|A0A0S3RFA9_PHAAN DNA topoisomerase; Found in the gene: LotjaGi1g1v0321800 LjG1.1_chr1 77276639 77301861 -
2 domain predictions
1 GO term
LotjaGi1g1v0354600.1
n.a. GRF zinc finger protein; TAIR: AT1G52603.1 GRF zinc finger protein; Swiss-Prot: sp|P38207|APN2_YEAST DNA-(apurinic or apyrimidinic site) lyase 2; TrEMBL-Plants: tr|A0A072VL81|A0A072VL81_MEDTR GRF zinc finger protein; Found in the gene: LotjaGi1g1v0354600 LjG1.1_chr1 82631320 82632061 +
2 domain predictions
1 GO term
LotjaGi1g1v0435900_LC.1
n.a. DNA topoisomerase; TAIR: AT5G15690.1 zinc ion binding protein; Swiss-Prot: sp|Q9ZS96|Y4478_ARATH Uncharacterized protein At4g04775; TrEMBL-Plants: tr|A0A072VLE9|A0A072VLE9_MEDTR GRF zinc finger protein; Found in the gene: LotjaGi1g1v0435900_LC LjG1.1_chr1 93019241 93020183 -
2 domain predictions
1 GO term
LotjaGi1g1v0562600_LC.1
n.a. GRF zinc finger protein; TAIR: AT5G13920.2 GRF zinc finger / Zinc knuckle protein; Swiss-Prot: sp|P38207|APN2_YEAST DNA-(apurinic or apyrimidinic site) lyase 2; TrEMBL-Plants: tr|A0A0L9U2U0|A0A0L9U2U0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0562600_LC LjG1.1_chr1 109480012 109481073 -
2 domain predictions
1 GO term
LotjaGi1g1v0635200_LC.1
n.a. DNA topoisomerase; TAIR: AT5G13920.1 GRF zinc finger / Zinc knuckle protein; Swiss-Prot: sp|Q9LVP1|TOP3A_ARATH DNA topoisomerase 3-alpha; TrEMBL-Plants: tr|A0A0S3RM16|A0A0S3RM16_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0635200_LC LjG1.1_chr1 119002266 119008651 +
2 domain predictions
1 GO term
LotjaGi1g1v0635400.1
n.a. DNA topoisomerase; TAIR: AT5G13920.1 GRF zinc finger / Zinc knuckle protein; Swiss-Prot: sp|Q9LVP1|TOP3A_ARATH DNA topoisomerase 3-alpha; TrEMBL-Plants: tr|A0A151R6F5|A0A151R6F5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0635400 LjG1.1_chr1 119020858 119024286 +
2 domain predictions
1 GO term
LotjaGi2g1v0216500_LC.1
n.a. DNA topoisomerase; TAIR: AT3G42860.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|Q9LP10|Y1920_ARATH Uncharacterized protein At1g43920, Chloroplastic; TrEMBL-Plants: tr|A0A0L9VN44|A0A0L9VN44_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0216500_LC LjG1.1_chr2 67000343 67001104 -
2 domain predictions
1 GO term
LotjaGi2g1v0232000_LC.1
n.a. DNA topoisomerase; TAIR: AT5G13920.1 GRF zinc finger / Zinc knuckle protein; Swiss-Prot: sp|Q9LVP1|TOP3A_ARATH DNA topoisomerase 3-alpha; TrEMBL-Plants: tr|A0A151R6F5|A0A151R6F5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0232000_LC LjG1.1_chr2 69122013 69124137 -
2 domain predictions
1 GO term
LotjaGi2g1v0321100_LC.1
n.a. GRF zinc finger protein; TAIR: AT2G07505.1 zinc ion binding protein; Swiss-Prot: sp|P38207|APN2_YEAST DNA-(apurinic or apyrimidinic site) lyase 2; TrEMBL-Plants: tr|A0A0L9VSM5|A0A0L9VSM5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0321100_LC LjG1.1_chr2 79588532 79589787 +
2 domain predictions
1 GO term
LotjaGi3g1v0112000_LC.1
n.a. GRF zinc finger protein; TAIR: AT1G52603.1 GRF zinc finger protein; Swiss-Prot: sp|Q9NG98|TOP3A_DROME DNA topoisomerase 3-alpha; TrEMBL-Plants: tr|A0A0B2QQH9|A0A0B2QQH9_GLYSO Uncharacterized protein; Found in the gene: LotjaGi3g1v0112000_LC LjG1.1_chr3 13819479 13820015 -
2 domain predictions
1 GO term
LotjaGi3g1v0173900_LC.1
n.a. DNA topoisomerase; TAIR: AT5G63920.1 topoisomerase 3alpha; Swiss-Prot: sp|Q9LVP1|TOP3A_ARATH DNA topoisomerase 3-alpha; TrEMBL-Plants: tr|A0A1J6JGG4|A0A1J6JGG4_NICAT Uncharacterized protein; Found in the gene: LotjaGi3g1v0173900_LC LjG1.1_chr3 24118067 24118611 -
2 domain predictions
1 GO term
LotjaGi3g1v0208400_LC.1
n.a. GRF zinc finger protein; TAIR: AT1G52603.1 GRF zinc finger protein; Swiss-Prot: sp|Q9ZS96|Y4478_ARATH Uncharacterized protein At4g04775; TrEMBL-Plants: tr|A0A0B2QQH9|A0A0B2QQH9_GLYSO Uncharacterized protein; Found in the gene: LotjaGi3g1v0208400_LC LjG1.1_chr3 30781913 30782708 +
2 domain predictions
1 GO term
LotjaGi3g1v0257300_LC.1
n.a. GRF zinc finger family protein; TAIR: AT2G27170.1 Structural maintenance of chromosomes (SMC) family protein; Swiss-Prot: sp|Q56YN8|SMC3_ARATH Structural maintenance of chromosomes protein 3; TrEMBL-Plants: tr|A0A0D9YAQ7|A0A0D9YAQ7_9ORYZ Uncharacterized protein; Found in the gene: LotjaGi3g1v0257300_LC LjG1.1_chr3 44639775 44642108 +
2 domain predictions
1 GO term
LotjaGi3g1v0285000_LC.2
n.a. DNA topoisomerase; TAIR: AT1G52603.1 GRF zinc finger protein; Swiss-Prot: sp|Q9LVP1|TOP3A_ARATH DNA topoisomerase 3-alpha; TrEMBL-Plants: tr|A0A1J6JGG4|A0A1J6JGG4_NICAT Uncharacterized protein; Found in the gene: LotjaGi3g1v0285000_LC LjG1.1_chr3 57474901 57480293 +
2 domain predictions
1 GO term
LotjaGi3g1v0285000_LC.4
n.a. DNA topoisomerase; TAIR: AT1G52603.1 GRF zinc finger protein; Swiss-Prot: sp|Q9LVP1|TOP3A_ARATH DNA topoisomerase 3-alpha; TrEMBL-Plants: tr|A0A1J6JGG4|A0A1J6JGG4_NICAT Uncharacterized protein; Found in the gene: LotjaGi3g1v0285000_LC LjG1.1_chr3 57474964 57480152 +
2 domain predictions
1 GO term
LotjaGi3g1v0410000_LC.1
n.a. DNA topoisomerase; TAIR: AT3G42860.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|Q9ZS96|Y4478_ARATH Uncharacterized protein At4g04775; TrEMBL-Plants: tr|A0A0L9VDF3|A0A0L9VDF3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0410000_LC LjG1.1_chr3 81392448 81394541 +
2 domain predictions
1 GO term
LotjaGi4g1v0128100.1
n.a. DNA-(apurinic or apyrimidinic site) lyase; TAIR: AT4G36050.3 endonuclease/exonuclease/phosphatase family protein; Swiss-Prot: sp|F4JNY0|APE2_ARATH DNA-(apurinic or apyrimidinic site) lyase 2; TrEMBL-Plants: tr|A0A151QUY4|A0A151QUY4_CAJCA DNA-(apurinic or apyrimidinic site) lyase; Found in the gene: LotjaGi4g1v0128100 LjG1.1_chr4 18676315 18685137 +
2 domain predictions
1 GO term
LotjaGi4g1v0143500_LC.1
n.a. DNA topoisomerase; TAIR: AT2G37125.1 GRF zinc finger protein; Swiss-Prot: sp|P38207|APN2_YEAST DNA-(apurinic or apyrimidinic site) lyase 2; TrEMBL-Plants: tr|A0A0L9U2L5|A0A0L9U2L5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0143500_LC LjG1.1_chr4 22603895 22611054 -
2 domain predictions
1 GO term
LotjaGi4g1v0211500_LC.1
n.a. DNA topoisomerase; TAIR: AT5G15690.1 zinc ion binding protein; Swiss-Prot: sp|Q9ZS96|Y4478_ARATH Uncharacterized protein At4g04775; TrEMBL-Plants: tr|A0A0L9VN44|A0A0L9VN44_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0211500_LC LjG1.1_chr4 49260220 49261690 +
2 domain predictions
1 GO term
LotjaGi4g1v0245000.1
n.a. GRF zinc finger protein; TAIR: AT2G06265.1 zinc ion-binding protein; Swiss-Prot: sp|A8K979|ERI2_HUMAN ERI1 exoribonuclease 2; TrEMBL-Plants: tr|A0A072V5S4|A0A072V5S4_MEDTR GRF zinc finger protein; Found in the gene: LotjaGi4g1v0245000 LjG1.1_chr4 59684314 59685059 -
2 domain predictions
1 GO term
LotjaGi4g1v0370800_LC.1
n.a. DNA topoisomerase; TAIR: AT4G04775.1 zinc ion binding protein; Swiss-Prot: sp|Q9ZS96|Y4478_ARATH Uncharacterized protein At4g04775; TrEMBL-Plants: tr|A0A0D3BGR5|A0A0D3BGR5_BRAOL Uncharacterized protein; Found in the gene: LotjaGi4g1v0370800_LC LjG1.1_chr4 75033991 75034751 -
2 domain predictions
1 GO term
LotjaGi5g1v0283300.1
n.a. GRF zinc finger protein; TAIR: AT1G52603.1 GRF zinc finger protein; Swiss-Prot: sp|P38207|APN2_YEAST DNA-(apurinic or apyrimidinic site) lyase 2; TrEMBL-Plants: tr|A0A072VL81|A0A072VL81_MEDTR GRF zinc finger protein; Found in the gene: LotjaGi5g1v0283300 LjG1.1_chr5 59974800 59975541 -
2 domain predictions
1 GO term
LotjaGi6g1v0105800_LC.1
n.a. DNA topoisomerase; TAIR: AT3G42860.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|P38207|APN2_YEAST DNA-(apurinic or apyrimidinic site) lyase 2; TrEMBL-Plants: tr|A0A0L9VDF3|A0A0L9VDF3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0105800_LC LjG1.1_chr6 23424294 23425487 +
2 domain predictions
1 GO term
LotjaGi6g1v0176400_LC.1
n.a. DNA topoisomerase; TAIR: AT5G63920.1 topoisomerase 3alpha; Swiss-Prot: sp|Q9LVP1|TOP3A_ARATH DNA topoisomerase 3-alpha; TrEMBL-Plants: tr|A0A078CE87|A0A078CE87_BRANA BnaC09g25450D protein; Found in the gene: LotjaGi6g1v0176400_LC LjG1.1_chr6 46788388 46789815 +
2 domain predictions
1 GO term
LotjaGi6g1v0233000_LC.1
n.a. DNA topoisomerase; TAIR: AT1G52603.1 GRF zinc finger protein; Swiss-Prot: sp|Q9LVP1|TOP3A_ARATH DNA topoisomerase 3-alpha; TrEMBL-Plants: tr|A0A1J6JGG4|A0A1J6JGG4_NICAT Uncharacterized protein; Found in the gene: LotjaGi6g1v0233000_LC LjG1.1_chr6 54232996 54236101 -
2 domain predictions
1 GO term