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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0636500 |
| Transcript ID | LotjaGi1g1v0636500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA cross-link repair protein; TAIR: AT3G26680.1 DNA repair metallo-beta-lactamase family protein; Swiss-Prot: sp|Q38961|SNM1_ARATH DNA cross-link repair protein SNM1; TrEMBL-Plants: tr|A0A151T990|A0A151T990_CAJCA DNA cross-link repair protein SNM1; Found in the gene: LotjaGi1g1v0636500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:119153515..119157355) extracted from Lotus japonicus Gifu genome v1.2.
GTTAATTTTCCCGCTGGTTCATTTAAAAAACCAAACCACCATTAAACTTCAATGCTTTTCGCGCCGGTACGAAAACGATG CCGCTATCCACCGTCGCCTCGCCGCCGCCGCCGTCCGAAGAGGCATGGTCACCTCACGACGGTAACGCTTACGACATTAA CGACGACTGCGCTTCGTTCACCATCGATTCACTGGACGAGGAGGGTTTCCCATCACAGATCCTCAGCGAACACGAGTTAC CGAACACATCAGAAGGAAGCAGTTTCGCCGCCGATTTCTACAGTTGCGGATCCGATTGGTCCTCATTGTTGCCAGGAGAA GATCGTGGGCAAAGAGATCTCGCTCGCGATTCGGCCCCGAAGAAGTTGAAGCAGTCCAATCTGTTCCAGATTTGGGGTTT CAAACGAAACGGTGCCTCTGAACCAGAATCCAGTCATGGTGGTTATTCTGGTAACGGAGATGGTGGCGGTGTTTTTCCTG AGACGAAGATTGTGACACCTGAAAATTGGGGTTCGATTTTGCGCGACACTGGGAAAGTGTTGGAGAACCCTAAATCTTCT CGCAAGAGAAATGATTCCCATAGAGAAAATAGGGTTACACGTGCTTGCCCCTTCTATAAGAAAATGCCAGGTGAAATGAA AGTTTTAGTTTGGAAACCCAGTAGATTTAGGGGGAAAGTGATTTTACTAGGAGTACCTTTGTAAGAGATAAGTGATTTTG GGAAATTTCGTCGTGGACTCGAATATGTTGGAAACAATTTGAGCTGAATAGTCAGTTTGCCATTAGTTAGATCTTGATGT TTTAATTTTCCATGTTTTGTTATGTGAATGAAAAATCAGTGTAGTGTCTGAAGTTCTAAGTTTAGCCTGTTTTCGAATGC AGGGACAGCGTTTACTGTCGATGCTTTTCGTTACGGGTGTGTTGAAGGGTGCTCAGCGTATTTTCTTAGTCATTTCCATA GCGATCACTATGGTGGCCTTAGCAAGAAATGGTCACATGGCCCTATTTATTGCTCTCCTCTCACAGGACGGCTAGTTCAA ATGTGTCTCTATGTAAATCCTTCGTAAGAACTCACGAACTCTTCTTTGTAGATTAATCACTTACATGAACAAGAAAATCG AAGTGCACCTGGTCATGATCTTTCCTTTCAATTTCAATAAAGTGATTAGCTTTTTATTGGATTTGTTTGTATAGGTACAT CCACCCTTTGGAGTTTAACACTGAACGTGTGATTGATGGCGTCAAAGTGACTTTGTTAGAAGCTAATCATTGCCCTGGTG CAGCTTTGATTCACTTTGACCTCCCAAATGGGCAACGTTATTTGCACACTGGGGACTTCAGAGCTTGTAAACAAATGCAA ACTCATCATCTTCTTGTAAATCATCGTGTAAATGTACTATATTTGGATACCACATATTGCAACCCTAAGTACAAGTAAGC CACTGATCATATTAAACATTTGTGTTGATCTGTCCTTTGGTTATAATATATGATCTCTGGTTGTTTGAACAAATTGAATG TCTGTAATGAAAATTTTCCGCTTTAGGTTCCCTTCCAAGGAAGCTGTACTCAATTATGTTGTCAAAATTACGAAGAACCA CCTCAAAATGCATCCCAAAACTTTAGTGGTTGTTGGGGCATATAGTATTGGCAAAGAATGTGTATATCTTGCAATTTCGA AGGCACTTGGGGTAAGTGGATTTTTTCTCTAGCACATCACTATTTTGGCTCTTGTGTTACAGCTCCTTTCTTGTCCATTG TACTTGTGGAAATGAATGACTGTCCCAAGAAATGTATTTCACATTAATTCCTAAGAGATCTGTTTATGTCTTTCTGGTGA TATATAGTCAACTGCTGAAGGTAAAGCGTTCACTTTACTTCTTCGACCCTTCTGCACTTAATTGCCAACCTTGTATTATT GATGATTAATTCTGGCTATTTGCGTTAGGGTTATGAGGCTCTTATTCATAATTGAAGAATGTTTTCTGCCTGAATTATCA AAACTCAAATGTAGCTTAAGTTACCAGGTTATCTTGCATGTCATAGACTGTTTGATCCATTGACAAAATATATGTGGCTG TCGTCTTATTCAGGTAAAAATTTATGCAAATGCTTCTAGAAGACGAATTTTGCTAGCTTTTGGTTGGCCTGAATTTCCAG ATAGTCTCTGTACAAATGGAAATAACACACTTCTTCATGTTCTGCCCATGTCATCTCTGAGATTTGAGGTTTAATTTTGG GCTGTTACATTTTAATCTCAGAAGTCTCAGCTCTTCATCTTATGATTCTATGTTGTTATCTTGTGATTCACTATCATGAT TTTCTTGTTACATTAGACGTTAAAGGATTACTTGAAGACCTACAAGGAACAATTTACAACAATATTGGCATTTCGTCCAA CAGGTTCTTTACCTGTGCTTTTAATCTCAAAATAATGTCTTGATAATCTTAGGTATTTTTAAGTTGCCAACTGAGAAGCT ATTGTCAGATAGAGTAGTCTGAGTATCAATAATTTAATCTCATATTTTCAGGATGGACTTTCAATGAGAAGATAAACAAT GATCTGGAACTAATTAAACCTGTTTCCAGAGCAAATGTCACGATATATGGTAAGATTATCTGCAGTTCAACAGCCATCCT TGATATAAAGTATGAACTTAGAATTAGTGCTTATTTATATTGTAACTATATGATTCTGGTTATTGAAATGCTGAGCAGGT CATGGTCCTGAATGTCAAACACTTTTAATTTTTTTGTTCTCTGTTGGCTTTATAGTAGTTATTTTCTAGCAGATTAGTAT GGTTTACAAGTTAATTTTCTCCCTTTTTCTAGGAGTTCCTTATAGTGAGCACTCCAGCTTCACAGAGCTGCAAGATTTTG TTCAGGTCCATAATTAAATATTATGATTACTCTTGTACTACATGCTTGAAATGCTTGATAATTAATGATAATTTTAGCAT TATAATTGCATTATTTGAGTTCCATTTATCAACGAATTTATCTTTAACTTCCTACAGTTTTTGAAGCCTGACAAGATAAT TCCTACTGTGAATGTTGGGAATGCTGCTAATCGAGAAAAGATGCAATCTTACTTCCGAGACTGGTTGAAGGCCTAAAGTC TCAGCTGTTCTTAAGAAATTGAGTTTGTTATCTGATACTTCAGTTTAGGAACTAATTGACGGGACTCAACATTTAATGTT GCTTGCAGGTGATCCTTTTTGTACCTTAACCACAAATGGCAACAGAGCTACGTTGTTCAGGTTGATCGCGATTTGTTCTC TGCTAAAAGTCTCTTTGAGAGAACCTATTGCAGGACAAACAAAACAATTTAGGACAACCAAAGGAGGAAAATATAGTATT AATTGTCATACCTTCTGTTGTCTTCTATGTATTTTTTGCACTTGACCATTTTGATCATTGTTTTTCAATATTGTATAGAA AACAATGTTAGCGGGGCGAAACATGGTAGGTAATAACATTTTTTGGAGGTACAACATGATTCCCCCCTTATTTATCCAAA TCCAAATGTAGGACAATTAATAGTTGGGGTTGGATCTACAGGGTCTTGTTTATCCCTAGAGCTTTTGCTTAAGTTGATGG TAGTGGTGGCTTCTATTTGATATTATTTTGAGAAATACACCATTGTATGATTTACAACGCTATTGTATATTAGCTGAGTT GAATTGCTTCTCATCTTTATGTCCCTTTTTGAAGCTACTTCTATAGTGGAGAAAAGCATCGCATCAATTTAAAACATAAG TATTATTACTGATTTGTATTTGGTGAAATCCTCCATCGTAGAACTATCATATCATGTAACCTAAAGTATGGCCTTAATTT T
CDS sequence (LotjaGi1g1v0636500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGCTATCCACCGTCGCCTCGCCGCCGCCGCCGTCCGAAGAGGCATGGTCACCTCACGACGGTAACGCTTACGACAT TAACGACGACTGCGCTTCGTTCACCATCGATTCACTGGACGAGGAGGGTTTCCCATCACAGATCCTCAGCGAACACGAGT TACCGAACACATCAGAAGGAAGCAGTTTCGCCGCCGATTTCTACAGTTGCGGATCCGATTGGTCCTCATTGTTGCCAGGA GAAGATCGTGGGCAAAGAGATCTCGCTCGCGATTCGGCCCCGAAGAAGTTGAAGCAGTCCAATCTGTTCCAGATTTGGGG TTTCAAACGAAACGGTGCCTCTGAACCAGAATCCAGTCATGGTGGTTATTCTGGTAACGGAGATGGTGGCGGTGTTTTTC CTGAGACGAAGATTGTGACACCTGAAAATTGGGGTTCGATTTTGCGCGACACTGGGAAAGTGTTGGAGAACCCTAAATCT TCTCGCAAGAGAAATGATTCCCATAGAGAAAATAGGGTTACACGTGCTTGCCCCTTCTATAAGAAAATGCCAGGGACAGC GTTTACTGTCGATGCTTTTCGTTACGGGTGTGTTGAAGGGTGCTCAGCGTATTTTCTTAGTCATTTCCATAGCGATCACT ATGGTGGCCTTAGCAAGAAATGGTCACATGGCCCTATTTATTGCTCTCCTCTCACAGGACGGCTAGTTCAAATGTGTCTC TATGTAAATCCTTCGTACATCCACCCTTTGGAGTTTAACACTGAACGTGTGATTGATGGCGTCAAAGTGACTTTGTTAGA AGCTAATCATTGCCCTGGTGCAGCTTTGATTCACTTTGACCTCCCAAATGGGCAACGTTATTTGCACACTGGGGACTTCA GAGCTTGTAAACAAATGCAAACTCATCATCTTCTTGTAAATCATCGTGTAAATGTACTATATTTGGATACCACATATTGC AACCCTAAGTACAAGTTCCCTTCCAAGGAAGCTGTACTCAATTATGTTGTCAAAATTACGAAGAACCACCTCAAAATGCA TCCCAAAACTTTAGTGGTTGTTGGGGCATATAGTATTGGCAAAGAATGTGTATATCTTGCAATTTCGAAGGCACTTGGGG TAAAAATTTATGCAAATGCTTCTAGAAGACGAATTTTGCTAGCTTTTGGTTGGCCTGAATTTCCAGATAGTCTCTGTACA AATGGAAATAACACACTTCTTCATGTTCTGCCCATGTCATCTCTGAGATTTGAGACGTTAAAGGATTACTTGAAGACCTA CAAGGAACAATTTACAACAATATTGGCATTTCGTCCAACAGGATGGACTTTCAATGAGAAGATAAACAATGATCTGGAAC TAATTAAACCTGTTTCCAGAGCAAATGTCACGATATATGGAGTTCCTTATAGTGAGCACTCCAGCTTCACAGAGCTGCAA GATTTTGTTCAGTTTTTGAAGCCTGACAAGATAATTCCTACTGTGAATGTTGGGAATGCTGCTAATCGAGAAAAGATGCA ATCTTACTTCCGAGACTGGTTGAAGGCCTAA
Protein sequence (LotjaGi1g1v0636500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPLSTVASPPPPSEEAWSPHDGNAYDINDDCASFTIDSLDEEGFPSQILSEHELPNTSEGSSFAADFYSCGSDWSSLLPG EDRGQRDLARDSAPKKLKQSNLFQIWGFKRNGASEPESSHGGYSGNGDGGGVFPETKIVTPENWGSILRDTGKVLENPKS SRKRNDSHRENRVTRACPFYKKMPGTAFTVDAFRYGCVEGCSAYFLSHFHSDHYGGLSKKWSHGPIYCSPLTGRLVQMCL YVNPSYIHPLEFNTERVIDGVKVTLLEANHCPGAALIHFDLPNGQRYLHTGDFRACKQMQTHHLLVNHRVNVLYLDTTYC NPKYKFPSKEAVLNYVVKITKNHLKMHPKTLVVVGAYSIGKECVYLAISKALGVKIYANASRRRILLAFGWPEFPDSLCT NGNNTLLHVLPMSSLRFETLKDYLKTYKEQFTTILAFRPTGWTFNEKINNDLELIKPVSRANVTIYGVPYSEHSSFTELQ DFVQFLKPDKIIPTVNVGNAANREKMQSYFRDWLKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| MobiDBLite | 1 | 16 | 16 | - | – | |
| SMART | 21 | 347 | 327 | 0.0044 | ||
| MobiDBLite | 42 | 62 | 21 | - | – | |
| PANTHER | 69 | 489 | 421 | 3.1E-163 | – | |
| PANTHER | 69 | 489 | 421 | 3.1E-163 | – | |
| CDD | 167 | 322 | 156 | 3.51208E-91 | – | |
| Gene3D | 183 | 496 | 314 | 4.4E-114 | ||
| SUPERFAMILY | 199 | 509 | 311 | 6.16E-42 | ||
| Gene3D | 325 | 473 | 149 | 4.4E-114 | – | |
| Pfam | 396 | 499 | 104 | 7.4E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0636500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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