Domain Predictions — View

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IPR011084

Source: InterPro

Description

IPR011084 is a DNA repair metallo-beta-lactamase.

<p>The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in [interpro:IPR001279] and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [[cite:PUB00014290]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 9

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v1798520.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA cross-link repair protein SNM1-like [Cicer arietinum] gi\|502132540\|ref\|XP_004501410.1\|	Domains G3DSA:1.10.150.50 G3DSA:3.60.15.10 IPR001279 IPR001660 IPR011084 IPR013761 PF00536 PF07522 PS50105 PTHR23240 PTHR23240:SF10 SM00454 SSF47769 SSF56281 cd09487 mobidb-lite	16
Lj1g3v3244630.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA ligase 1-like, partial [Cicer arietinum] gi\|502106786\|ref\|XP_004493055.1\|	Domains IPR001279 IPR011084 PF07522 PTHR23240 PTHR23240:SF12 SSF56281 mobidb-lite	7
Lj1g3v3244630.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA ligase 1-like, partial [Cicer arietinum] gi\|502106786\|ref\|XP_004493055.1\|	Domains G3DSA:1.10.3260.10 G3DSA:3.30.1490.70 G3DSA:3.30.470.30 IPR001279 IPR011084 IPR012308 IPR012310 IPR016059 PF01068 PF04675 PF07522 PS00697 PTHR10459 PTHR10459:SF38 SSF117018 SSF56091 SSF56281 mobidb-lite	18
Lj1g3v3932480.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA cross-link repair protein SNM1-like isoform X2 [Cicer arietinum] gi\|502106957\|ref\|XP_004493110.1\|	Domains G3DSA:3.60.15.10 IPR001279 IPR011084 PF07522 PTHR23240 PTHR23240:SF6 SM00849 SSF56281 mobidb-lite	9
Lj1g3v3932480.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA cross-link repair protein SNM1-like isoform X1 [Cicer arietinum] gi\|502106954\|ref\|XP_004493109.1\|	Domains G3DSA:3.60.15.10 IPR001279 IPR011084 PF07522 PTHR23240 PTHR23240:SF6 SM00849 SSF56281 mobidb-lite	9
LotjaGi1g1v0372700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA cross-link repair 1A protein; TAIR: AT2G45700.1 sterile alpha motif (SAM) domain-containing protein; Swiss-Prot: sp\|Q38961\|SNM1_ARATH DNA cross-link repair protein SNM1; TrEMBL-Plants: tr\|A0A151QYV3\|A0A151QYV3_CAJCA DNA cross-link repair 1A protein; Found in the gene: LotjaGi1g1v0372700	Domains CYTOPLASMIC_DOMAIN G3DSA:1.10.150.50 G3DSA:3.40.50.12650 G3DSA:3.60.15.10 IPR001660 IPR011084 IPR013761 IPR036866 NON_CYTOPLASMIC_DOMAIN PF00536 PF07522 PS50105 PTHR23240 PTHR23240:SF25 SM00454 SSF47769 SSF56281 TRANSMEMBRANE cd09487 cd16273 mobidb-lite	21
LotjaGi1g1v0545100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA ligase; TAIR: AT1G66730.1 DNA LIGASE 6; Swiss-Prot: sp\|F4HPZ9\|LIG6_ARATH DNA ligase 6; TrEMBL-Plants: tr\|A0A0L9TDF0\|A0A0L9TDF0_PHAAN DNA ligase; Found in the gene: LotjaGi1g1v0545100	Domains G3DSA:1.10.3260.10 G3DSA:2.40.50.140 G3DSA:3.30.1490.70 G3DSA:3.30.470.30 G3DSA:3.40.50.12650 G3DSA:3.60.15.10 IPR000977 IPR001279 IPR011084 IPR012308 IPR012309 IPR012310 IPR012340 IPR016059 IPR036599 IPR036866 PF01068 PF04675 PF04679 PF07522 PS00697 PS50160 PTHR45674 PTHR45674:SF8 SM00849 SSF117018 SSF50249 SSF56091 SSF56281 TIGR00574 cd07900 cd07969 cd16273 mobidb-lite	34
LotjaGi1g1v0636500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA cross-link repair protein; TAIR: AT3G26680.1 DNA repair metallo-beta-lactamase family protein; Swiss-Prot: sp\|Q38961\|SNM1_ARATH DNA cross-link repair protein SNM1; TrEMBL-Plants: tr\|A0A151T990\|A0A151T990_CAJCA DNA cross-link repair protein SNM1; Found in the gene: LotjaGi1g1v0636500	Domains G3DSA:3.40.50.12650 G3DSA:3.60.15.10 IPR001279 IPR011084 IPR036866 PF07522 PTHR23240 PTHR23240:SF28 SM00849 SSF56281 cd16273 mobidb-lite	12
LotjaGi3g1v0461700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA repair metallo-beta-lactamase family protein; TAIR: AT1G27410.1 DNA repair metallo-beta-lactamase family protein; Swiss-Prot: sp\|B0V2S2\|DCR1B_DANRE 5' exonuclease Apollo; TrEMBL-Plants: tr\|A0A072TG27\|A0A072TG27_MEDTR DNA repair metallo-beta-lactamase family protein; Found in the gene: LotjaGi3g1v0461700	Domains IPR011084 IPR036866 PF07522 PTHR23240 PTHR23240:SF22 SSF56281 mobidb-lite	7

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	11.11