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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0640600 |
| Transcript ID | LotjaGi1g1v0640600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Something about silencing protein 10; TAIR: AT2G43650.1 Sas10/U3 ribonucleoprotein (Utp) family protein; Swiss-Prot: sp|Q12136|SAS10_YEAST Something about silencing protein 10; TrEMBL-Plants: tr|A0A151S4Q1|A0A151S4Q1_CAJCA Something about silencing protein 10; Found in the gene: LotjaGi1g1v0640600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:119752710..119760115) extracted from Lotus japonicus Gifu genome v1.2.
CTTACCCTAATATTGTGAATAGAGCGCAACCAGCCATGCCACTCTACTGCAACTGCTACTGCGCGCTTGAAAACGGGAAC GAAGCTCTCCTTGTCGAAACGCTTGCGCTTTGGACCAAGTTTTTGAGTTGCTTCTTCATCTAGGTGAGTGCTTCATGAAT AGAGCTTCAGATTCATATATTTTTCTGCTATAGCTACTGTGAAAATCGTGGTGCTGTTCATCAAAATACAATTCATGACT TTGTGATTAAATTCATGGGGTTTTATGCCAAAATCAATGTATTCTTGTTTGTCTATTGTCATTATATTTGTTTTGCTTTC AGTTTGAAATTGGTTTAACAAAAGCCAAACCGGTTTAGATTATATTTGGATAGGGTTTGATTTTGATCAAAATTACCACT GAAATATTGCTCTTGGAGTTATAGGATTTGGCGGGTGAAGAACTCAGAATGGGGAAGAAAGGGGGAAAATCTCATTCAAA GAAAGACATCACGAATGCTAAAACAAGTTCCCGATCCAAGCATGATTCCTTTTCGAGTGACGACATGGATGACGAGATTG ATGCCTGTAATTTTCTTCTTTTACTTCATTCCATTTTTTGCCAAATAAACACTACTTTTTTTTTTTACTATGACAAGGAT ATTTGTTCGATAGAGTTCTAATTCTAATTATATTTGTTTTTATATGCTACTGAATTTTGGCTTTGCTTGTTTTGCTTTTA TTATTCCAGTTCATAAGCACAGGGACATTGTTCCCCTTGACGTGAATGATGATTTTGGAGAATCAGATGAAGATGACGAG CTTCCTATCTTTGATTCTAAGGTTTTTGTTACTATAAGCTCTTTTTTTAGTAGTCACCAAAGGCAAAACCTGTTTTTCTT TCAACTCAATGAAACATTAGAATCTAATTTTCTTGCTTAATAACTAAAACAGGACAGTTGATGACTTTTTTTTTAATTTC CTTTTGTATACTTTTATCTCATTTTATGTATCATTTCATTTCGTTTCAAATATTGGTCAAAGGATATTGATAATGATGAA GATGAAGATGAAGAAGATGGTGACGACGATGAATATGATGATGATGATGATCCAAATGACAATGTGGCAAAAAGTAAGTA TATTATTTAAATACATGTATACCCATCTAAGAGCTTTAAATACATGTATACCTATCTAAGAGGTAAGAGCTTCATTTTAT TGATAGAGATGCATCATTGTACTGACATAATCTAATAACTACTTTGTGTAATAGAAGCTAGAACAATACAGGTTTACAAA TCCTTCGTTTGTTATCTTATCTTCTTGTACATGTATTGAACATGTTTTATCAAATCTTACGGTTAGCTAGTCTTAATTCC TAAATTAAGTAAGAAGTTGGTGCCCAATTTTAGTTAATTCATGTTGGACATTTTGCATTCCTCAGAGATAAATAGAGACC TATTAATCTAGCTCTGTGATGGTTTTGTATGTCAAAATTCTTGCTTATTTTCCATTGTTACTTAATTACTTTATCCAGTG TTTGAAGTTTAATTTATTCTACAGGTATGATGTTACTAAATATATTTGTTTATTGTACTTAGTAATTAGGCAAAGAAATT TTTTACGTGCGAAGTTTGGCGGAGGTGAGGATGAAACGCAAGATGATGATGATGGTGATGAGGAAGATGATAAACATATT CTTGGTGGGAGAAGGTCCGCTCATGGTGCTGACATTCATAATATAGAGGTGAGGGTTTGAACATTGCATATGAGAAGATT TTTTCGCTACATGTGATATTAAGGCCATTGATGAGTAGATGCTCTCATTCTGGTGGATCCACATCCTAACTGGTCAAGTT TTATTTTTCCCACATATATTTATGTTTCTATTGTTTTGACATTTTGATTGAAGCTACTATCAAGTGATGATGAGGCCCCA AAAGAAGAGGAAGAAATTGCAATGCAGATACAAAGGGAGAAGGCAAGATCTTTAACAATGGAAGACTATGACCTTGATAT AAGTGAAGACAAAGTTAAAGATAAATCTACTTTAAAGGTGAGTGCTGTTAATTATCTCATTGGTTTGTAGCCCAACTGTG GACAATTTCCATGTTAATGGAAGAAATTCAAAAGAGAGGGATGAATGATATGTAGGGGCAAAGTATGGTGAAGGCATGTG ATTATGAGGGAGTATATAGTATCTGTAAACTAACTTTAAGTAAACTTCTACATCTTTACAGGATGCATCAGATAAAGGAA ACAGAGAAATGAAGTCACCAGATAGAGATATAACTTTCAAGGCTGAGGATCTGAATGCTTTGTCAAAAGAGGAGCAAATG AACCTTGTGTATAGGTTATTATGTTGTCTTTTTCTTACCTTTGGTAAATATTGATTATTTGTGATGAATTATGGTGTTGC CTTTTCTAACGTTGTACCTGTAGTATCTAACCAGGTTATTGACATTGATTCCAAGTGAATGCAAGTTATAGATTGCTGTA CAAAACTGAAAATATGAATATGAATCCCAAAAGCAAATTGGATTGAAAAAGTAAAGGAGGAAAAGGAAGGATTTCTGGGG CATGATTAGATCCTATTTTCATTTTCTGTTTTCAGTACAGTGAAACAATAATAGGATTTGAAAGCAGGAAACAAAATGAA AACAAAGTGCCAGTTTGTAATTAAATTTGAAAACAGAAAATGAAAATAGAGACCAAACAGGCCCTTGGTGTTTGTGATGC TCTAAAGAGAGGAAATATTATGTTTACTCCAAAGATTGAGACCTCAGTAGAATAACATGCTAACCCAAAACTGAAGAGAT AATAAAAAAAATAACTAAACAAAATTGATTGAGAAAGAAAAAGAACATAAGAAAATGAAAATAGAGACCAAACAGGCCCT TGGTGTTTGTGATGCTCTAAAGAGAGGAAATATTATGTTTACTCTAAAGATACCTCAGTAGAATAACATGCTAACCCAAA ACTGAAGAGATGATAAAAAAATAACTAAACAAAATTGATTGAGAAAGAAAAAGAACATAAGAAAGGAAATGAAGTGCTTG TGCTGCTTTAATGGAAAAGAACTAATTTGATAGTAAACAATTGAAAAGGAAAACTTGAGGAACTCAGTATAAAAGTGTGA GCCATTGCCTTCATGATTTTATTCTTGCAGTTCTCACATGAAAATTTAGTTATTGGCCTGATGGAAAAACTTCATTATTT AGAACAGTTGACTTTTGTTTTTTTTTCATTGCTTTCAAAGTGAGATTTCAATATAAATGGTCCATCATTTTGATATTTTA AAGCATCATTCATATTGAAATGGGTATTTTCCAACATAACAATCATTCTAGCAATATTCAGTAGAAATCTAGAAAAGCAT TCAACTTGAGGGGTGCTGCTAAAACCTAACATAATTGGGTCAGCAGCCAGCCACTTTATTCAAGTTAGTGGTCTAAAAGC CTTTTCCCCATAGTTTCGCTCAATTGCTTCCATACTCACTGATAATTAAATATCAGATATAGTTGTGTTAGTACATGTTC ATGTCTATGTTAACATTATCATAGAATATATTTTCCTATACTTCTTGATTAGTGACTATCTCCTGTTTGCAGGTGTGCTC CAGAATTAATTGATTGGTTATCTGAATTAAACGAGGCACACAAACAGCTTGAATGCAAAATTAATCCATTCTTAAGCAAG GTTATTCCTCCTCTCGACTTTTCTTGGACCTAATCTAGTCTCGGTCTAAGAAACAAAATTTGGTTGCTAGATCAATCATA GAAGCAGAGTATGGCTCATTTTACATTTGCGGGCTCAACATATGGAGCTTGATATATTCTTTATCCCAGGAAAGGGTTAT AACAAGTCCCTCAATGTGTCATATTGATGTTCAAGTTGATATCCTTGCAAAGCCGTTGTCACTCTCAGTTTTTTATAGAT TTGATTCTTACTGCACCTCGCAGATTTTGTGTGGGGGCATATTAGAGTACAATCTATACTAAACTCTAATGTTGGTTTTG TATTAGACGATCAGTTTTTATAACTGTCGAGAGTTATGATAGACTGTTAGATCCAGCTATTGGCAGCTGACAGTTATTTT ATTGCAGGAAGCAGTTACTAACTAAGTCCAAACTAATTTAGTTAGAAACTGATTCCTCTCTCTCTCCGTGTTCCTCTCTT CTACATATGCTAGTTATAAAAAGATCATTGAAATAATTTTTTATACACTGAAACATACAAAATGTTAAGAAATATCTTTC TTCTATTTCTCTTCTCTTTTGTAATGTGCATTAAAGGCCATACGGCATTTCAATTGATTTTATCTTCTGTACAGGTTCAG AAGGGGGAAATAGTTATGGAAGGAGGAGTGCGCTATTTTGAATTAAAACAGCTTCTTTTGCTATCCTATTGCCAAGCTAT AACCTTCTACCTTCTTCTCAAGTCTGAAGGGCATCCAGTCCATGATCATCCTGTAGTAGCTCGCCTTGCAGAGATCAGGG AGTTATTGGATCAGGTTTTGTTTTAAAAGAAGCTAATATCTCTGACTGTAAACATCTAGTTTCCAAAACCATTACTTGTC ATATGAACATGATTGGTTTGAATAAGTAACATGGAGCTTCTTCTAGATGGAGTAAAATACCACTTGTGTGATATTGGAAT GTCTTAGCTTTCCTGTATAGTGGATTGTGCATTGATGAAGTAATCTGGAATTCTGGATTTTTGGAATAGTCATGTTACAA TGATATTGCTTTTTTGGTCCAATGTCAACGGTTCAAGCAAATTTATTGGAAATAGCTATGCTTATATGGGATAATTAATT ATATTGCATAACCCTGCGCTGGTAGGCTTGCTTAAACTGCGGATGAATTGGTCTATAATTCATATCAGATTACTGTATGA ACTCTACTGTGACAACAAATGCATAGTGATATGTGAATATTTACACCATTGATGCAGAATTGCACACAAGTATAAGATTT GAGATGAAGTTAGTTGTCTTTAAATTTTACAATATTCTAATTCATGCCTCCCTCAACAGATAAAACAACTTGACGCCAAA CTTCCAGTTGGACTTGAGGATATTCTTAAAGAAAGTAATGGGTTAGAAACAGTAGTAAATTCAGATAATGAGAATGCTCC AATCACAATTGATTCTATCACTAGAAACCAAGAGCTGCCACTGGTCTCTGCGGAATCACTAGAAGAAGCAATGGTAATCA TCATCATTTAATCTTGGATTATACAGTTATTCGTCTTCCAAATGATGATCTTAAAAAGTGACGTCAAGTCCTCACCGTTA ATATTTCTATGTATTGCTGCAGCCTATCAAGGTAGATGAGATAAAAAAATTGGATTCCTCAAAGGATGGTGTACCAAAAG CAAGAAAAGTTAAACATCAGGTGAGATATAGATCATGGAGTATGGTTTTTACTTTGATTTCTTGATTATCATCATAAAGT ACCTATGCAATATTACCTTTCATTTGATTTATTTTTGTTACTGTAAAAGGTTATTAATTTGACTGAAATAAACCTTCACA TGGCAGAAGGATCACATTGGTATGCGGAGTTTGGAAATGTTGACAGTTAGAGCTTCCCTTGCTGAAAAATGGAAAAAAAA GGTTCCGTCCACTGACACTACTCCAGTTCCTAGCACTGGTCTAAAGCGTTCGAGACCGGACAACAGGTAAAACTTTACTT CTAAATCCTTTACATTACTTATTTTCAATCCAACGTCTTGGAAGCTTACTTGCAACTTTAAAATTCTCAGTCAGCATGGA ACATCTGTTTTCGACGATGATGCTGTGGGGCCAGCTAGATTGTCTCAGGGTCTTCGTAAATCTAATCTGAAGAAACCCAA GGTACTGAACTTGAGATTTTTGTAAGATGGATTATGATTTTTAATTTCATTTACAATTCATAGTAAGTAACCTGCATCTG CATTTTTGTAATAGTATTATATTAACTGTTTTAGGCTACGAAATTTTAATTTTTTATATGACCTTTTTTTGAAACCTCTC ACTGGTTCCACTTTTGTGAAAGGTGATTTCCGGTGATGATGATTTACCTGAGAAAGATGATATTGGCGAAAGACGAAGGA AACATGAGCTTAGGGTGTTGGCTAGTGCTGGAATTAATGGTGGGAATGGTGATGATGATGATGATGGTGACCATGGGTCT CCTGAAGATGGTGCCAAACAGGCTCACGTTGAAGCTGAAGATTCAGATAATGAATTTTACGAGCAAGTGAAACAACTGCG AGCTGCTAAATTGGCTGCTAAAGCTGAGACTTACTCAAGGTGAAGTTTTGAGACCCTTTTGCCTTTGGCTATTTTTCTGA TTGAGGGATTTCACTTTTCAGTCTTTTTTCAACCAGAAAATGAAGATTGTTTTTCTTTTTCAGGAAATCAGCAGCGTCCT CTTTGTCGGAGACTTTTTCAGAGACTATAGAAGGAAAACGCCATATCACTTCTCAGGTTCTTATTTGATATATTGCAGTT TTCAATTTAATTGTTTATATTTTCTTGCAAAGTTTCAATTTTTCACTTGTTGCCAATATGCTGTAGATGGAGAAGAACAG GGGACTAACGCGAATTCGCAATAAGGATAAAAAGAATCCTAGAAAGAATTACAAGGTACTTCAACTAACACTTGTTCTTT AAGGTTAACAAACACTTCAAATTTTGATGTTTAACTGACTTCTTTGGTTGCTATTTGTCTTTCTTTTGCTATTTAATGTG CAGATGAAGCATCAAAAAGCTGTTAAGAATCGCAAAGGGCAGGTTCAGGCCATCAGAAAGCCTACCGCACCTTATGGTGG TGAAGCCACTGGAATTAACGCTTCTATCAGTCGGAGCGTCAGATTCAAGAGTTGATATTTGTATTGATATACAATGTCAT TCACTCATTCTTAACTTCACCAATTTTGAATCATCTATGCAGATAGATGGTTGTATCTCGTTTGCCCCTTATACCTATTG GAAGATGAACATAGTTTGCCATACTAGATTTTTCAAATTTGTCAGTTTTGATCCGGTTATTTAGAAGTTATAAATATTTT TTTTTGAGAACTATTTAAGAGTTATATTTGAAATGTAAAGCACTATTTAGTGTTTTTTTAGCGAGCCAAGAAAAGAGGTT GAAGAAAAATGACAGAAGTTTCTAGTTTCTGCCAAAGATCCAGTATATCCGAAAATGAATTATTTCCGTTGCAAAATAAT TTTGTACGCAAATTCAAATGAAACATCAAGAACATTCTTTGGGAAATTTTTGGTGGGTAAAGCAATTAAAATTCCGTGAG TTTGCTTACTCTTTTTTGAAGTATGTTATCTTTTGGGGCTTAGCCCCTTCATGTAAACAAAAACATATATGTTATCTTTA TTATTTTCCCTATTTTTTATGTCTAATCATTAAGTTAGTAAATAAA
CDS sequence (LotjaGi1g1v0640600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAAGAAAGGGGGAAAATCTCATTCAAAGAAAGACATCACGAATGCTAAAACAAGTTCCCGATCCAAGCATGATTC CTTTTCGAGTGACGACATGGATGACGAGATTGATGCCTTTCATAAGCACAGGGACATTGTTCCCCTTGACGTGAATGATG ATTTTGGAGAATCAGATGAAGATGACGAGCTTCCTATCTTTGATTCTAAGGATATTGATAATGATGAAGATGAAGATGAA GAAGATGGTGACGACGATGAATATGATGATGATGATGATCCAAATGACAATGTGGCAAAAATAATTAGGCAAAGAAATTT TTTACGTGCGAAGTTTGGCGGAGGTGAGGATGAAACGCAAGATGATGATGATGGTGATGAGGAAGATGATAAACATATTC TTGGTGGGAGAAGGTCCGCTCATGGTGCTGACATTCATAATATAGAGCTACTATCAAGTGATGATGAGGCCCCAAAAGAA GAGGAAGAAATTGCAATGCAGATACAAAGGGAGAAGGCAAGATCTTTAACAATGGAAGACTATGACCTTGATATAAGTGA AGACAAAGTTAAAGATAAATCTACTTTAAAGGATGCATCAGATAAAGGAAACAGAGAAATGAAGTCACCAGATAGAGATA TAACTTTCAAGGCTGAGGATCTGAATGCTTTGTCAAAAGAGGAGCAAATGAACCTTGTGTATAGGTGTGCTCCAGAATTA ATTGATTGGTTATCTGAATTAAACGAGGCACACAAACAGCTTGAATGCAAAATTAATCCATTCTTAAGCAAGGTTCAGAA GGGGGAAATAGTTATGGAAGGAGGAGTGCGCTATTTTGAATTAAAACAGCTTCTTTTGCTATCCTATTGCCAAGCTATAA CCTTCTACCTTCTTCTCAAGTCTGAAGGGCATCCAGTCCATGATCATCCTGTAGTAGCTCGCCTTGCAGAGATCAGGGAG TTATTGGATCAGATAAAACAACTTGACGCCAAACTTCCAGTTGGACTTGAGGATATTCTTAAAGAAAGTAATGGGTTAGA AACAGTAGTAAATTCAGATAATGAGAATGCTCCAATCACAATTGATTCTATCACTAGAAACCAAGAGCTGCCACTGGTCT CTGCGGAATCACTAGAAGAAGCAATGCCTATCAAGGTAGATGAGATAAAAAAATTGGATTCCTCAAAGGATGGTGTACCA AAAGCAAGAAAAGTTAAACATCAGAAGGATCACATTGGTATGCGGAGTTTGGAAATGTTGACAGTTAGAGCTTCCCTTGC TGAAAAATGGAAAAAAAAGGTTCCGTCCACTGACACTACTCCAGTTCCTAGCACTGGTCTAAAGCGTTCGAGACCGGACA ACAGTCAGCATGGAACATCTGTTTTCGACGATGATGCTGTGGGGCCAGCTAGATTGTCTCAGGGTCTTCGTAAATCTAAT CTGAAGAAACCCAAGGTGATTTCCGGTGATGATGATTTACCTGAGAAAGATGATATTGGCGAAAGACGAAGGAAACATGA GCTTAGGGTGTTGGCTAGTGCTGGAATTAATGGTGGGAATGGTGATGATGATGATGATGGTGACCATGGGTCTCCTGAAG ATGGTGCCAAACAGGCTCACGTTGAAGCTGAAGATTCAGATAATGAATTTTACGAGCAAGTGAAACAACTGCGAGCTGCT AAATTGGCTGCTAAAGCTGAGACTTACTCAAGGAAATCAGCAGCGTCCTCTTTGTCGGAGACTTTTTCAGAGACTATAGA AGGAAAACGCCATATCACTTCTCAGATGGAGAAGAACAGGGGACTAACGCGAATTCGCAATAAGGATAAAAAGAATCCTA GAAAGAATTACAAGATGAAGCATCAAAAAGCTGTTAAGAATCGCAAAGGGCAGGTTCAGGCCATCAGAAAGCCTACCGCA CCTTATGGTGGTGAAGCCACTGGAATTAACGCTTCTATCAGTCGGAGCGTCAGATTCAAGAGTTGA
Protein sequence (LotjaGi1g1v0640600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKKGGKSHSKKDITNAKTSSRSKHDSFSSDDMDDEIDAFHKHRDIVPLDVNDDFGESDEDDELPIFDSKDIDNDEDEDE EDGDDDEYDDDDDPNDNVAKIIRQRNFLRAKFGGGEDETQDDDDGDEEDDKHILGGRRSAHGADIHNIELLSSDDEAPKE EEEIAMQIQREKARSLTMEDYDLDISEDKVKDKSTLKDASDKGNREMKSPDRDITFKAEDLNALSKEEQMNLVYRCAPEL IDWLSELNEAHKQLECKINPFLSKVQKGEIVMEGGVRYFELKQLLLLSYCQAITFYLLLKSEGHPVHDHPVVARLAEIRE LLDQIKQLDAKLPVGLEDILKESNGLETVVNSDNENAPITIDSITRNQELPLVSAESLEEAMPIKVDEIKKLDSSKDGVP KARKVKHQKDHIGMRSLEMLTVRASLAEKWKKKVPSTDTTPVPSTGLKRSRPDNSQHGTSVFDDDAVGPARLSQGLRKSN LKKPKVISGDDDLPEKDDIGERRRKHELRVLASAGINGGNGDDDDDGDHGSPEDGAKQAHVEAEDSDNEFYEQVKQLRAA KLAAKAETYSRKSAASSLSETFSETIEGKRHITSQMEKNRGLTRIRNKDKKNPRKNYKMKHQKAVKNRKGQVQAIRKPTA PYGGEATGINASISRSVRFKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 161 | 161 | - | – | |
| PANTHER | 3 | 660 | 658 | 2.4E-159 | – | |
| PANTHER | 3 | 660 | 658 | 2.4E-159 | – | |
| MobiDBLite | 7 | 51 | 45 | - | – | |
| MobiDBLite | 52 | 94 | 43 | - | – | |
| MobiDBLite | 130 | 154 | 25 | - | – | |
| MobiDBLite | 190 | 211 | 22 | - | – | |
| Pfam | 244 | 323 | 80 | 7.4E-16 | ||
| MobiDBLite | 430 | 550 | 121 | - | – | |
| MobiDBLite | 437 | 461 | 25 | - | – | |
| MobiDBLite | 483 | 510 | 28 | - | – | |
| MobiDBLite | 522 | 550 | 29 | - | – | |
| Pfam | 587 | 659 | 73 | 1.4E-24 | ||
| MobiDBLite | 608 | 627 | 20 | - | – | |
| MobiDBLite | 608 | 646 | 39 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0640600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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